Incidental Mutation 'R4419:Vmn1r43'
ID 326995
Institutional Source Beutler Lab
Gene Symbol Vmn1r43
Ensembl Gene ENSMUSG00000068231
Gene Name vomeronasal 1 receptor 43
Synonyms V1ra5
MMRRC Submission 041140-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.054) question?
Stock # R4419 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 89846443-89847511 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 89846629 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 286 (S286P)
Ref Sequence ENSEMBL: ENSMUSP00000154510 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000089418] [ENSMUST00000226741] [ENSMUST00000226983] [ENSMUST00000227279] [ENSMUST00000228709]
AlphaFold Q8VIC9
Predicted Effect probably benign
Transcript: ENSMUST00000089418
AA Change: S286P

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000086839
Gene: ENSMUSG00000068231
AA Change: S286P

DomainStartEndE-ValueType
Pfam:V1R 54 318 2.9e-126 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226240
Predicted Effect probably benign
Transcript: ENSMUST00000226741
AA Change: S286P

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000226983
AA Change: S286P

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000227279
Predicted Effect probably benign
Transcript: ENSMUST00000228709
AA Change: S286P

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.4%
  • 20x: 95.6%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Amdhd2 G A 17: 24,377,652 (GRCm39) P126L probably benign Het
Arfip2 T C 7: 105,288,270 (GRCm39) T44A probably damaging Het
B4galt1 A G 4: 40,853,537 (GRCm39) V90A probably benign Het
Bad C A 19: 6,928,053 (GRCm39) A115E probably benign Het
Bicc1 A G 10: 70,782,804 (GRCm39) L521P possibly damaging Het
Caskin1 T C 17: 24,723,683 (GRCm39) S824P probably damaging Het
Cblb T A 16: 51,867,621 (GRCm39) D76E possibly damaging Het
Celsr3 G T 9: 108,720,443 (GRCm39) A2572S possibly damaging Het
Csmd3 T C 15: 47,567,707 (GRCm39) Q2152R probably damaging Het
D2hgdh T A 1: 93,757,535 (GRCm39) V150E probably damaging Het
Ddn C A 15: 98,703,492 (GRCm39) W600L probably benign Het
Dicer1 A T 12: 104,671,373 (GRCm39) Y966N probably damaging Het
Dsp T A 13: 38,379,108 (GRCm39) I1352N probably damaging Het
Duox1 G A 2: 122,157,607 (GRCm39) A578T probably benign Het
Dysf T C 6: 84,184,224 (GRCm39) probably null Het
Elmo2 T C 2: 165,153,675 (GRCm39) probably null Het
Heg1 A T 16: 33,547,805 (GRCm39) E864V probably benign Het
Hoxb9 T C 11: 96,162,807 (GRCm39) V147A probably benign Het
Kdm1b C T 13: 47,216,553 (GRCm39) R308W probably damaging Het
Ky G A 9: 102,419,909 (GRCm39) V639I probably damaging Het
Med16 G A 10: 79,734,216 (GRCm39) A566V probably benign Het
Mettl17 G T 14: 52,124,729 (GRCm39) G167C possibly damaging Het
Mgat4b T C 11: 50,123,813 (GRCm39) F318L probably damaging Het
Mug2 C A 6: 122,056,589 (GRCm39) A1178D probably damaging Het
Myo3b A G 2: 69,926,706 (GRCm39) D51G probably damaging Het
Naip2 T C 13: 100,297,133 (GRCm39) N968D probably benign Het
Nbea T C 3: 55,917,021 (GRCm39) H820R probably damaging Het
Nqo1 C T 8: 108,118,749 (GRCm39) probably null Het
Or10ak7 A T 4: 118,791,586 (GRCm39) I153N possibly damaging Het
Or6c68 T C 10: 129,157,684 (GRCm39) F64S possibly damaging Het
Or8b51 C T 9: 38,569,365 (GRCm39) V108I probably benign Het
Ppargc1a T C 5: 51,652,044 (GRCm39) D218G probably damaging Het
Rras A G 7: 44,670,003 (GRCm39) D145G probably damaging Het
Scn3a C A 2: 65,297,304 (GRCm39) G1452C probably damaging Het
Slc22a2 C A 17: 12,831,473 (GRCm39) S421* probably null Het
Slc39a10 A G 1: 46,849,226 (GRCm39) F797L probably benign Het
Spta1 T A 1: 174,074,990 (GRCm39) Y2405* probably null Het
Ss18 A G 18: 14,766,662 (GRCm39) Y359H unknown Het
St14 C T 9: 31,008,224 (GRCm39) C537Y probably damaging Het
Tmem252 T A 19: 24,654,910 (GRCm39) Y96N probably damaging Het
Trafd1 T C 5: 121,511,396 (GRCm39) D474G probably benign Het
Trmt1l A G 1: 151,316,559 (GRCm39) I20M probably damaging Het
Ulk1 C T 5: 110,937,223 (GRCm39) R691Q probably benign Het
Other mutations in Vmn1r43
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01748:Vmn1r43 APN 6 89,847,294 (GRCm39) missense probably damaging 1.00
IGL02476:Vmn1r43 APN 6 89,847,043 (GRCm39) missense possibly damaging 0.95
IGL02958:Vmn1r43 APN 6 89,847,031 (GRCm39) missense probably benign 0.09
R0413:Vmn1r43 UTSW 6 89,846,830 (GRCm39) missense probably damaging 1.00
R1662:Vmn1r43 UTSW 6 89,846,572 (GRCm39) missense possibly damaging 0.76
R1668:Vmn1r43 UTSW 6 89,846,683 (GRCm39) missense probably benign 0.01
R4719:Vmn1r43 UTSW 6 89,846,837 (GRCm39) missense probably benign 0.02
R4798:Vmn1r43 UTSW 6 89,846,892 (GRCm39) missense probably benign 0.01
R5520:Vmn1r43 UTSW 6 89,846,728 (GRCm39) missense probably damaging 0.98
R5643:Vmn1r43 UTSW 6 89,847,354 (GRCm39) missense probably damaging 1.00
R5644:Vmn1r43 UTSW 6 89,847,354 (GRCm39) missense probably damaging 1.00
R5717:Vmn1r43 UTSW 6 89,846,905 (GRCm39) missense probably damaging 1.00
R6647:Vmn1r43 UTSW 6 89,846,841 (GRCm39) missense probably damaging 1.00
R6914:Vmn1r43 UTSW 6 89,847,319 (GRCm39) missense probably benign 0.02
R6942:Vmn1r43 UTSW 6 89,847,319 (GRCm39) missense probably benign 0.02
R7092:Vmn1r43 UTSW 6 89,846,885 (GRCm39) missense probably benign 0.02
R7402:Vmn1r43 UTSW 6 89,846,803 (GRCm39) missense probably benign 0.02
R7457:Vmn1r43 UTSW 6 89,847,172 (GRCm39) missense probably damaging 0.98
R7572:Vmn1r43 UTSW 6 89,846,547 (GRCm39) missense possibly damaging 0.93
R7807:Vmn1r43 UTSW 6 89,847,219 (GRCm39) missense probably benign 0.07
R8406:Vmn1r43 UTSW 6 89,847,414 (GRCm39) missense possibly damaging 0.55
R8696:Vmn1r43 UTSW 6 89,847,321 (GRCm39) missense probably damaging 0.99
R8859:Vmn1r43 UTSW 6 89,846,937 (GRCm39) missense probably damaging 1.00
R8894:Vmn1r43 UTSW 6 89,846,746 (GRCm39) missense probably benign 0.02
R9072:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9073:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9075:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9076:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9237:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9239:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9240:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9293:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9383:Vmn1r43 UTSW 6 89,846,552 (GRCm39) missense possibly damaging 0.94
R9398:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9399:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9401:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9402:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9594:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9595:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9596:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9624:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9628:Vmn1r43 UTSW 6 89,846,877 (GRCm39) missense probably damaging 1.00
R9656:Vmn1r43 UTSW 6 89,847,440 (GRCm39) missense possibly damaging 0.47
X0020:Vmn1r43 UTSW 6 89,847,316 (GRCm39) missense probably benign 0.00
Z1177:Vmn1r43 UTSW 6 89,847,467 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- ATTTGGCAAAGCACATAGACAGC -3'
(R):5'- GGCCCTTTTATGCATGCAC -3'

Sequencing Primer
(F):5'- CATGCTATGAATGACAATTCCGACGG -3'
(R):5'- CCTTTTATGCATGCACAGGAAACAG -3'
Posted On 2015-07-07