Mutagenetix > Incidental Mutation

Incidental Mutation 'R4355:Patj'

327478

Institutional Source

Beutler Lab

Gene Symbol

Patj

Ensembl Gene

ENSMUSG00000061859

Gene Name

PATJ, crumbs cell polarity complex component

Synonyms

Inadl, Cipp

MMRRC Submission

041108-MU

Accession Numbers

Genbank: NM_172696; MGI: 1277960

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4355 (G1)

Quality Score

223

Status

Validated

Chromosome

Chromosomal Location

98395785-98719603 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 98650454 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tryptophan at position 210 (C210W)

Ref Sequence

ENSEMBL: ENSMUSP00000099854 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030290] [ENSMUST00000041284] [ENSMUST00000102792] [ENSMUST00000107029] [ENSMUST00000107034]

AlphaFold

Q63ZW7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000030290
AA Change: C210W

PolyPhen 2 Score 0.869 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000030290
Gene: ENSMUSG00000061859
AA Change: C210W

Domain	Start	End	E-Value	Type
PDZ	31	106	6.12e-19	SMART
low complexity region	134	144	N/A	INTRINSIC
low complexity region	188	206	N/A	INTRINSIC
PDZ	258	333	4.36e-24	SMART
PDZ	355	428	2.49e-19	SMART
PDZ	496	573	1.73e-18	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000041284
AA Change: C1432W

PolyPhen 2 Score 0.770 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000049176
Gene: ENSMUSG00000061859
AA Change: C1432W

Domain	Start	End	E-Value	Type
L27	8	68	6.53e-9	SMART
PDZ	143	221	1.78e-20	SMART
PDZ	256	328	1.15e-23	SMART
PDZ	374	453	3.15e-21	SMART
coiled coil region	486	513	N/A	INTRINSIC
PDZ	570	641	1.28e-12	SMART
PDZ	696	775	9.5e-16	SMART
low complexity region	980	991	N/A	INTRINSIC
low complexity region	1054	1062	N/A	INTRINSIC
PDZ	1083	1166	8.65e-19	SMART
PDZ	1253	1328	6.12e-19	SMART
low complexity region	1356	1366	N/A	INTRINSIC
low complexity region	1410	1428	N/A	INTRINSIC
PDZ	1480	1555	4.36e-24	SMART
PDZ	1577	1650	2.49e-19	SMART
PDZ	1718	1795	2.13e-18	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102792
AA Change: C210W

PolyPhen 2 Score 0.869 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000099854
Gene: ENSMUSG00000061859
AA Change: C210W

Domain	Start	End	E-Value	Type
PDZ	31	106	6.12e-19	SMART
low complexity region	134	144	N/A	INTRINSIC
low complexity region	188	206	N/A	INTRINSIC
PDZ	258	333	4.36e-24	SMART
PDZ	355	428	2.49e-19	SMART
PDZ	496	573	2.13e-18	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107029
AA Change: C859W

PolyPhen 2 Score 0.770 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000102644
Gene: ENSMUSG00000061859
AA Change: C859W

Domain	Start	End	E-Value	Type
PDZ	1	68	1e-9	SMART
PDZ	123	202	4.7e-18	SMART
low complexity region	407	418	N/A	INTRINSIC
low complexity region	481	489	N/A	INTRINSIC
PDZ	510	593	4.3e-21	SMART
PDZ	680	755	2.9e-21	SMART
low complexity region	783	793	N/A	INTRINSIC
low complexity region	837	855	N/A	INTRINSIC
PDZ	907	982	2.2e-26	SMART
PDZ	1004	1077	1.2e-21	SMART
PDZ	1145	1222	1e-20	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107034
AA Change: C1404W

PolyPhen 2 Score 0.643 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000102649
Gene: ENSMUSG00000061859
AA Change: C1404W

Domain	Start	End	E-Value	Type
L27	8	68	6.53e-9	SMART
PDZ	143	221	1.78e-20	SMART
PDZ	256	328	1.15e-23	SMART
PDZ	374	453	3.15e-21	SMART
coiled coil region	486	513	N/A	INTRINSIC
PDZ	566	637	1.28e-12	SMART
PDZ	692	771	9.5e-16	SMART
low complexity region	976	987	N/A	INTRINSIC
low complexity region	1050	1058	N/A	INTRINSIC
PDZ	1079	1162	8.65e-19	SMART
PDZ	1249	1324	6.12e-19	SMART
low complexity region	1352	1362	N/A	INTRINSIC
low complexity region	1382	1400	N/A	INTRINSIC
PDZ	1452	1499	7.78e0	SMART

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.9%

Validation Efficiency

100% (57/57)

MGI Phenotype

FUNCTION: This gene encodes a multivalent PDZ domain protein, which is expressed exclusively in brain and kidney. This protein selectively interacts with inward rectifier K+ (Kir) family members, N-methyl-D-aspartate receptor subunits, neurexins and neuroligins, as well as cell surface molecules enriched in synaptic membranes. Thus, this protein may serve as a scaffold that brings structurally diverse but functionally connected proteins into close proximity at the synapse. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

All alleles(5) : Gene trapped(5)

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam26a	T	G	8: 43,570,185 (GRCm38)	Q89H	probably benign	Het
Adgrb1	T	C	15: 74,543,662 (GRCm38)	F697S	probably damaging	Het
Adgrl2	A	T	3: 148,839,152 (GRCm38)	V769E	probably damaging	Het
Aldh7a1	A	T	18: 56,548,494 (GRCm38)	F173L	probably null	Het
Arntl	A	G	7: 113,303,406 (GRCm38)	I421V	possibly damaging	Het
Bcl3	G	T	7: 19,811,580 (GRCm38)	C208*	probably null	Het
Casz1	T	C	4: 148,952,335 (GRCm38)	S1685P	unknown	Het
Cep250	A	G	2: 155,991,525 (GRCm38)	E1789G	probably damaging	Het
Cep76	A	T	18: 67,626,640 (GRCm38)	D334E	probably benign	Het
Clca3b	A	T	3: 144,825,458 (GRCm38)		probably null	Het
Col9a3	A	G	2: 180,606,478 (GRCm38)	S208G	probably benign	Het
Ddx47	T	C	6: 135,021,505 (GRCm38)	V388A	probably benign	Het
Dync1h1	C	T	12: 110,632,899 (GRCm38)	A1896V	possibly damaging	Het
Eif2ak2	T	A	17: 78,858,534 (GRCm38)	R411S	probably benign	Het
F7	A	G	8: 13,034,774 (GRCm38)	T267A	probably benign	Het
Fras1	C	A	5: 96,700,242 (GRCm38)	D1770E	probably benign	Het
G2e3	T	A	12: 51,365,337 (GRCm38)	Y387N	probably benign	Het
Hspg2	C	T	4: 137,529,418 (GRCm38)	L1491F	probably damaging	Het
Ighv3-4	T	C	12: 114,253,640 (GRCm38)	I110M	probably benign	Het
Itgb5	T	A	16: 33,844,997 (GRCm38)	C28S	probably damaging	Het
Kbtbd11	C	A	8: 15,028,578 (GRCm38)	N392K	probably damaging	Het
Kcnmb4	A	G	10: 116,473,284 (GRCm38)	S80P	possibly damaging	Het
Kif21a	C	T	15: 90,970,833 (GRCm38)	C721Y	probably benign	Het
Kirrel	C	T	3: 87,089,151 (GRCm38)	M380I	probably null	Het
Klrc3	T	C	6: 129,639,162 (GRCm38)	M189V	probably benign	Het
Macf1	T	A	4: 123,475,091 (GRCm38)	E394V	possibly damaging	Het
Mrgprb4	C	T	7: 48,198,701 (GRCm38)	G160R	possibly damaging	Het
Myb	A	G	10: 21,152,617 (GRCm38)	S116P	probably damaging	Het
Nf2	G	A	11: 4,780,613 (GRCm38)	Q513*	probably null	Het
Nmnat3	C	T	9: 98,410,152 (GRCm38)	T150M	possibly damaging	Het
Olfr361	C	A	2: 37,084,930 (GRCm38)	V273F	probably benign	Het
Olfr743	T	C	14: 50,533,759 (GRCm38)	C116R	possibly damaging	Het
Pde3b	A	G	7: 114,416,287 (GRCm38)	H246R	probably benign	Het
Pnp2	A	G	14: 50,959,625 (GRCm38)	H56R	probably benign	Het
Prkg1	A	G	19: 30,569,229 (GRCm38)		probably benign	Het
Rhbdf1	C	T	11: 32,216,236 (GRCm38)	S8N	probably damaging	Het
Rimbp3	A	G	16: 17,209,692 (GRCm38)	K327E	possibly damaging	Het
Rnf219	A	G	14: 104,479,257 (GRCm38)	V560A	probably benign	Het
Rsph6a	T	A	7: 19,067,078 (GRCm38)		probably null	Het
Ryr2	T	C	13: 11,649,812 (GRCm38)	N3535S	probably benign	Het
Ssfa2	A	G	2: 79,641,998 (GRCm38)	N132S	probably benign	Het
Ston1	T	G	17: 88,637,008 (GRCm38)	V614G	probably damaging	Het
Svep1	T	A	4: 58,138,695 (GRCm38)	T466S	possibly damaging	Het
Tas2r109	A	T	6: 132,980,181 (GRCm38)	I262N	probably benign	Het
Tmtc1	T	C	6: 148,355,098 (GRCm38)		probably benign	Het
Tshz2	G	A	2: 169,884,938 (GRCm38)	E16K	possibly damaging	Het
Ufsp2	T	A	8: 45,985,465 (GRCm38)	S193R	possibly damaging	Het
Ugt2b5	C	A	5: 87,139,763 (GRCm38)	E182*	probably null	Het
Usp43	A	G	11: 67,891,464 (GRCm38)	V376A	probably benign	Het
Utp15	A	T	13: 98,259,247 (GRCm38)	F76I	possibly damaging	Het
Wdr62	A	C	7: 30,242,248 (GRCm38)	L1141R	probably damaging	Het
Zfp418	T	A	7: 7,172,162 (GRCm38)	M18K	probably benign	Het

Other mutations in Patj

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00089:Patj	APN	4	98,465,106 (GRCm38)	missense	probably damaging	1.00
IGL00095:Patj	APN	4	98,535,562 (GRCm38)	missense	possibly damaging	0.78
IGL00517:Patj	APN	4	98,441,071 (GRCm38)	missense	possibly damaging	0.95
IGL00802:Patj	APN	4	98,424,406 (GRCm38)	missense	possibly damaging	0.93
IGL01064:Patj	APN	4	98,496,973 (GRCm38)	missense	possibly damaging	0.95
IGL01110:Patj	APN	4	98,413,024 (GRCm38)	missense	probably damaging	0.99
IGL01407:Patj	APN	4	98,413,050 (GRCm38)	missense	possibly damaging	0.49
IGL01821:Patj	APN	4	98,456,211 (GRCm38)	missense	probably damaging	1.00
IGL02399:Patj	APN	4	98,591,936 (GRCm38)	missense	probably damaging	1.00
IGL02494:Patj	APN	4	98,703,987 (GRCm38)	splice site	probably benign
IGL02803:Patj	APN	4	98,426,064 (GRCm38)	missense	probably damaging	0.99
IGL02931:Patj	APN	4	98,411,173 (GRCm38)	splice site	probably benign
IGL03017:Patj	APN	4	98,465,027 (GRCm38)	splice site	probably benign
IGL03115:Patj	APN	4	98,443,803 (GRCm38)	missense	probably damaging	1.00
IGL03209:Patj	APN	4	98,465,140 (GRCm38)	missense	probably null	1.00
IGL03377:Patj	APN	4	98,465,104 (GRCm38)	missense	probably damaging	1.00
D4186:Patj	UTSW	4	98,638,762 (GRCm38)	missense	probably benign	0.17
PIT4531001:Patj	UTSW	4	98,441,090 (GRCm38)	missense	probably damaging	0.98
R0136:Patj	UTSW	4	98,667,648 (GRCm38)	missense	probably damaging	1.00
R0294:Patj	UTSW	4	98,497,048 (GRCm38)	missense	probably damaging	0.99
R0376:Patj	UTSW	4	98,568,987 (GRCm38)	missense	probably damaging	1.00
R0463:Patj	UTSW	4	98,674,308 (GRCm38)	missense	probably damaging	1.00
R0465:Patj	UTSW	4	98,535,507 (GRCm38)	splice site	probably null
R0466:Patj	UTSW	4	98,688,156 (GRCm38)	missense	probably damaging	1.00
R0544:Patj	UTSW	4	98,569,110 (GRCm38)	missense	probably damaging	1.00
R0624:Patj	UTSW	4	98,681,235 (GRCm38)	splice site	probably benign
R0657:Patj	UTSW	4	98,667,648 (GRCm38)	missense	probably damaging	1.00
R1281:Patj	UTSW	4	98,416,695 (GRCm38)	missense	probably damaging	1.00
R1393:Patj	UTSW	4	98,424,411 (GRCm38)	missense	probably benign	0.01
R1480:Patj	UTSW	4	98,469,582 (GRCm38)	missense	probably damaging	1.00
R1667:Patj	UTSW	4	98,413,027 (GRCm38)	missense	probably damaging	1.00
R1728:Patj	UTSW	4	98,431,780 (GRCm38)	missense	possibly damaging	0.50
R1729:Patj	UTSW	4	98,431,780 (GRCm38)	missense	possibly damaging	0.50
R1797:Patj	UTSW	4	98,687,438 (GRCm38)	missense	probably damaging	1.00
R1818:Patj	UTSW	4	98,623,648 (GRCm38)	missense	possibly damaging	0.85
R1835:Patj	UTSW	4	98,491,590 (GRCm38)	missense	probably benign	0.00
R1880:Patj	UTSW	4	98,497,240 (GRCm38)	missense	probably benign	0.00
R2009:Patj	UTSW	4	98,456,169 (GRCm38)	missense	probably damaging	1.00
R2090:Patj	UTSW	4	98,437,323 (GRCm38)	unclassified	probably benign
R2120:Patj	UTSW	4	98,456,225 (GRCm38)	missense	probably benign	0.01
R2180:Patj	UTSW	4	98,523,502 (GRCm38)	critical splice donor site	probably null
R2655:Patj	UTSW	4	98,437,450 (GRCm38)	missense	possibly damaging	0.64
R3156:Patj	UTSW	4	98,674,228 (GRCm38)	missense	probably damaging	1.00
R3749:Patj	UTSW	4	98,469,600 (GRCm38)	missense	probably damaging	1.00
R3767:Patj	UTSW	4	98,681,219 (GRCm38)	nonsense	probably null
R3913:Patj	UTSW	4	98,569,101 (GRCm38)	missense	probably damaging	0.99
R3917:Patj	UTSW	4	98,592,008 (GRCm38)	nonsense	probably null
R3918:Patj	UTSW	4	98,456,218 (GRCm38)	missense	probably damaging	1.00
R4299:Patj	UTSW	4	98,677,321 (GRCm38)	missense	possibly damaging	0.89
R4471:Patj	UTSW	4	98,535,579 (GRCm38)	missense	probably damaging	1.00
R4762:Patj	UTSW	4	98,405,570 (GRCm38)	nonsense	probably null
R4877:Patj	UTSW	4	98,569,058 (GRCm38)	missense	possibly damaging	0.94
R4945:Patj	UTSW	4	98,495,064 (GRCm38)	missense	probably damaging	0.97
R5274:Patj	UTSW	4	98,518,981 (GRCm38)	missense	probably damaging	0.99
R5343:Patj	UTSW	4	98,676,193 (GRCm38)	missense	probably damaging	1.00
R5554:Patj	UTSW	4	98,454,396 (GRCm38)	missense	possibly damaging	0.79
R5688:Patj	UTSW	4	98,520,810 (GRCm38)	nonsense	probably null
R5880:Patj	UTSW	4	98,411,145 (GRCm38)	missense	probably damaging	0.96
R5972:Patj	UTSW	4	98,569,053 (GRCm38)	missense	probably damaging	0.98
R6149:Patj	UTSW	4	98,424,325 (GRCm38)	missense	possibly damaging	0.72
R6192:Patj	UTSW	4	98,456,157 (GRCm38)	missense	probably damaging	1.00
R6265:Patj	UTSW	4	98,469,567 (GRCm38)	missense	probably benign	0.08
R6350:Patj	UTSW	4	98,405,618 (GRCm38)	missense	probably benign	0.26
R6363:Patj	UTSW	4	98,431,860 (GRCm38)	missense	probably benign	0.25
R6434:Patj	UTSW	4	98,491,629 (GRCm38)	missense	probably damaging	1.00
R6496:Patj	UTSW	4	98,416,752 (GRCm38)	missense	probably damaging	1.00
R6896:Patj	UTSW	4	98,426,050 (GRCm38)	missense	possibly damaging	0.87
R7039:Patj	UTSW	4	98,569,078 (GRCm38)	missense	probably damaging	0.96
R7040:Patj	UTSW	4	98,441,080 (GRCm38)	missense	probably benign	0.02
R7052:Patj	UTSW	4	98,677,260 (GRCm38)	missense	probably benign	0.03
R7066:Patj	UTSW	4	98,413,197 (GRCm38)	missense	probably benign	0.24
R7236:Patj	UTSW	4	98,411,057 (GRCm38)	missense	probably damaging	1.00
R7242:Patj	UTSW	4	98,591,933 (GRCm38)	missense	probably benign	0.26
R7260:Patj	UTSW	4	98,416,733 (GRCm38)	missense	possibly damaging	0.94
R7412:Patj	UTSW	4	98,411,139 (GRCm38)	missense	probably damaging	0.98
R7493:Patj	UTSW	4	98,495,061 (GRCm38)	missense	probably benign	0.41
R7570:Patj	UTSW	4	98,424,500 (GRCm38)	splice site	probably null
R7571:Patj	UTSW	4	98,568,980 (GRCm38)	missense	probably damaging	1.00
R7626:Patj	UTSW	4	98,546,987 (GRCm38)	missense	probably benign	0.35
R7658:Patj	UTSW	4	98,688,179 (GRCm38)	missense	probably damaging	1.00
R7664:Patj	UTSW	4	98,496,950 (GRCm38)	missense	possibly damaging	0.92
R7669:Patj	UTSW	4	98,518,942 (GRCm38)	missense	probably damaging	1.00
R7796:Patj	UTSW	4	98,546,983 (GRCm38)	start codon destroyed	probably benign	0.05
R7870:Patj	UTSW	4	98,424,316 (GRCm38)	missense	probably damaging	1.00
R7883:Patj	UTSW	4	98,611,135 (GRCm38)	missense	probably benign	0.00
R7948:Patj	UTSW	4	98,424,310 (GRCm38)	missense	probably damaging	0.99
R8050:Patj	UTSW	4	98,538,964 (GRCm38)	missense	probably benign	0.00
R8183:Patj	UTSW	4	98,674,229 (GRCm38)	missense	probably damaging	0.96
R8239:Patj	UTSW	4	98,682,071 (GRCm38)	missense	possibly damaging	0.90
R8483:Patj	UTSW	4	98,424,302 (GRCm38)	missense	probably damaging	1.00
R8546:Patj	UTSW	4	98,437,397 (GRCm38)	missense	probably benign	0.00
R8746:Patj	UTSW	4	98,505,830 (GRCm38)	intron	probably benign
R8844:Patj	UTSW	4	98,591,969 (GRCm38)	missense	probably damaging	1.00
R8905:Patj	UTSW	4	98,497,175 (GRCm38)	missense	probably damaging	1.00
R8912:Patj	UTSW	4	98,497,328 (GRCm38)	missense
R8959:Patj	UTSW	4	98,591,975 (GRCm38)	missense	probably damaging	0.99
R9083:Patj	UTSW	4	98,513,634 (GRCm38)	missense	probably benign	0.03
R9173:Patj	UTSW	4	98,638,721 (GRCm38)	missense	probably benign
R9206:Patj	UTSW	4	98,539,073 (GRCm38)	missense	unknown
R9208:Patj	UTSW	4	98,539,073 (GRCm38)	missense	unknown
R9347:Patj	UTSW	4	98,688,247 (GRCm38)	missense	probably benign	0.19
R9560:Patj	UTSW	4	98,682,052 (GRCm38)	missense	probably benign	0.29
R9609:Patj	UTSW	4	98,688,236 (GRCm38)	missense	probably benign	0.00
R9617:Patj	UTSW	4	98,505,754 (GRCm38)	missense	probably benign	0.03
R9658:Patj	UTSW	4	98,465,140 (GRCm38)	missense	probably null	1.00
R9756:Patj	UTSW	4	98,677,298 (GRCm38)	missense	probably benign
Z1176:Patj	UTSW	4	98,676,318 (GRCm38)	nonsense	probably null
Z1176:Patj	UTSW	4	98,611,130 (GRCm38)	missense	probably benign	0.11
Z1177:Patj	UTSW	4	98,497,174 (GRCm38)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AATCAACCTAGCTGTCCCTTG -3'
(R):5'- AGCTAGCTGTCCTACATCCC -3'

Sequencing Primer
(F):5'- TGAGCATCCTGTTCGCTCAAAAC -3'
(R):5'- TCCCCATCTCACTGGTAAGGAAG -3'

Posted On

2015-07-07