Incidental Mutation 'R4406:Or2y1'
| ID |
327669 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or2y1
|
| Ensembl Gene |
ENSMUSG00000059729 |
| Gene Name |
olfactory receptor family 2 subfamily Y member 1 |
| Synonyms |
Olfr1385, Olfr1549-ps1, MOR256-42P, MOR256-42P, GA_x6K02T2QP88-5941817-5940888, MOR256-41P |
| MMRRC Submission |
041688-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.117)
|
| Stock # |
R4406 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
49385362-49386291 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 49385744 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Histidine
at position 128
(R128H)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150035
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071807]
[ENSMUST00000214948]
|
| AlphaFold |
Q7TQT1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000071807
AA Change: R128H
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
| SMART Domains |
Protein: ENSMUSP00000071710
Gene: ENSMUSG00000059729
AA Change: R128H
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
306 |
2.1e-46 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
35 |
214 |
9.5e-6 |
PFAM |
|
Pfam:7tm_1
|
41 |
289 |
2.8e-22 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000214948
AA Change: R128H
PolyPhen 2
Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000216450
|
| Meta Mutation Damage Score |
0.0915 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.1%
|
| Validation Efficiency |
100% (45/45) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acaca |
C |
T |
11: 84,171,275 (GRCm39) |
L1170F |
probably benign |
Het |
| Acss3 |
A |
T |
10: 106,889,198 (GRCm39) |
D207E |
probably damaging |
Het |
| Adgrl1 |
T |
C |
8: 84,656,671 (GRCm39) |
S325P |
probably damaging |
Het |
| Ankrd37 |
A |
G |
8: 46,450,131 (GRCm39) |
|
probably benign |
Het |
| Atp13a2 |
C |
T |
4: 140,733,787 (GRCm39) |
P1059S |
probably damaging |
Het |
| Camkv |
T |
C |
9: 107,823,418 (GRCm39) |
|
probably null |
Het |
| Ces1f |
T |
C |
8: 93,989,950 (GRCm39) |
T387A |
probably benign |
Het |
| Dmxl1 |
T |
A |
18: 50,022,620 (GRCm39) |
L1653I |
probably damaging |
Het |
| Fabp3 |
C |
T |
4: 130,206,180 (GRCm39) |
T57I |
probably benign |
Het |
| Fat2 |
G |
A |
11: 55,153,094 (GRCm39) |
A3706V |
probably benign |
Het |
| Fbln1 |
T |
A |
15: 85,115,757 (GRCm39) |
|
probably null |
Het |
| Gm1527 |
G |
A |
3: 28,949,874 (GRCm39) |
V45M |
possibly damaging |
Het |
| Gm5084 |
A |
G |
13: 60,360,380 (GRCm39) |
|
noncoding transcript |
Het |
| Itpr1 |
T |
A |
6: 108,331,624 (GRCm39) |
H194Q |
probably damaging |
Het |
| Kif24 |
A |
T |
4: 41,393,954 (GRCm39) |
L973Q |
probably damaging |
Het |
| Lrfn4 |
T |
C |
19: 4,663,299 (GRCm39) |
T412A |
probably benign |
Het |
| Ly75 |
T |
C |
2: 60,184,894 (GRCm39) |
E420G |
probably damaging |
Het |
| Map3k12 |
T |
C |
15: 102,413,837 (GRCm39) |
T45A |
probably damaging |
Het |
| Mib1 |
A |
C |
18: 10,763,289 (GRCm39) |
K446N |
probably damaging |
Het |
| Mrpl4 |
T |
C |
9: 20,918,231 (GRCm39) |
W146R |
probably damaging |
Het |
| Myof |
A |
G |
19: 37,911,426 (GRCm39) |
S1502P |
probably damaging |
Het |
| Nomo1 |
A |
G |
7: 45,706,092 (GRCm39) |
N482S |
probably benign |
Het |
| Or5b105 |
A |
G |
19: 13,079,958 (GRCm39) |
S237P |
possibly damaging |
Het |
| Or5b96 |
A |
T |
19: 12,867,598 (GRCm39) |
Y114* |
probably null |
Het |
| Or8g21 |
T |
C |
9: 38,905,865 (GRCm39) |
I289V |
possibly damaging |
Het |
| Or9s15 |
T |
A |
1: 92,525,036 (GRCm39) |
M265K |
possibly damaging |
Het |
| Osbpl10 |
C |
T |
9: 114,938,549 (GRCm39) |
H70Y |
probably damaging |
Het |
| Pdilt |
A |
C |
7: 119,094,232 (GRCm39) |
S340A |
probably damaging |
Het |
| Ppan |
C |
A |
9: 20,802,288 (GRCm39) |
D226E |
probably damaging |
Het |
| Rufy4 |
T |
C |
1: 74,186,822 (GRCm39) |
C537R |
probably damaging |
Het |
| Sema3g |
G |
A |
14: 30,950,116 (GRCm39) |
V766M |
probably benign |
Het |
| Skint6 |
T |
A |
4: 113,013,683 (GRCm39) |
N356I |
probably benign |
Het |
| Slco2b1 |
A |
T |
7: 99,314,096 (GRCm39) |
S496T |
probably benign |
Het |
| Trak1 |
T |
C |
9: 121,260,602 (GRCm39) |
V11A |
probably damaging |
Het |
| Ubqlnl |
C |
T |
7: 103,798,925 (GRCm39) |
V191M |
probably benign |
Het |
| Umod |
G |
A |
7: 119,065,287 (GRCm39) |
P581S |
probably damaging |
Het |
| Zfat |
A |
G |
15: 68,052,040 (GRCm39) |
S585P |
probably benign |
Het |
| Zfp472 |
C |
A |
17: 33,197,134 (GRCm39) |
T403N |
probably benign |
Het |
| Zfp936 |
A |
G |
7: 42,839,748 (GRCm39) |
Q405R |
possibly damaging |
Het |
|
| Other mutations in Or2y1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01722:Or2y1
|
APN |
11 |
49,385,793 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02098:Or2y1
|
APN |
11 |
49,386,224 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03206:Or2y1
|
APN |
11 |
49,385,536 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL03402:Or2y1
|
APN |
11 |
49,385,873 (GRCm39) |
missense |
probably benign |
|
|
R0412:Or2y1
|
UTSW |
11 |
49,385,594 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1263:Or2y1
|
UTSW |
11 |
49,385,848 (GRCm39) |
missense |
probably benign |
|
|
R1371:Or2y1
|
UTSW |
11 |
49,385,650 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1488:Or2y1
|
UTSW |
11 |
49,385,945 (GRCm39) |
missense |
probably benign |
0.07 |
|
R1835:Or2y1
|
UTSW |
11 |
49,385,497 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1923:Or2y1
|
UTSW |
11 |
49,386,131 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R2290:Or2y1
|
UTSW |
11 |
49,385,857 (GRCm39) |
missense |
probably benign |
|
|
R3738:Or2y1
|
UTSW |
11 |
49,386,287 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R3739:Or2y1
|
UTSW |
11 |
49,386,287 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R4034:Or2y1
|
UTSW |
11 |
49,386,287 (GRCm39) |
missense |
possibly damaging |
0.56 |
|
R4193:Or2y1
|
UTSW |
11 |
49,386,134 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5239:Or2y1
|
UTSW |
11 |
49,385,555 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6713:Or2y1
|
UTSW |
11 |
49,385,784 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6861:Or2y1
|
UTSW |
11 |
49,385,632 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7916:Or2y1
|
UTSW |
11 |
49,385,543 (GRCm39) |
missense |
probably benign |
|
|
R8712:Or2y1
|
UTSW |
11 |
49,385,671 (GRCm39) |
missense |
probably benign |
|
|
R9509:Or2y1
|
UTSW |
11 |
49,385,476 (GRCm39) |
missense |
probably benign |
|
|
R9624:Or2y1
|
UTSW |
11 |
49,385,834 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9793:Or2y1
|
UTSW |
11 |
49,385,882 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9795:Or2y1
|
UTSW |
11 |
49,385,882 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Or2y1
|
UTSW |
11 |
49,385,894 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AATGGACCTTCGACTGCACAC -3'
(R):5'- GGAAGACAGGCATCTCACAG -3'
Sequencing Primer
(F):5'- TTCGACTGCACACCCCCATG -3'
(R):5'- TCTCACAGAAGAAGTGATTCAGTCG -3'
|
| Posted On |
2015-07-07 |
Incidental Mutation