Mutagenetix > Incidental Mutation

Incidental Mutation 'R4407:Vgll4'

327708

Institutional Source

Beutler Lab

Gene Symbol

Vgll4

Ensembl Gene

ENSMUSG00000030315

Gene Name

vestigial like family member 4

Synonyms

VGL-4

MMRRC Submission

041689-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4407 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

114860628-114969994 bp(-) (GRCm38)

Type of Mutation

splice site (5 bp from exon)

DNA Base Change (assembly)

C to T at 114890612 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000123139 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032459] [ENSMUST00000139640] [ENSMUST00000147639]

AlphaFold

Q80V24

Predicted Effect

probably null
Transcript: ENSMUST00000032459

SMART Domains

Protein: ENSMUSP00000032459
Gene: ENSMUSG00000030315

Domain	Start	End	E-Value	Type
TDU	203	218	5.27e-4	SMART
TDU	231	246	9.84e-4	SMART
low complexity region	251	264	N/A	INTRINSIC
low complexity region	275	287	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000139640

SMART Domains

Protein: ENSMUSP00000118618
Gene: ENSMUSG00000030315

Domain	Start	End	E-Value	Type
Pfam:VGLL4	4	189	1.1e-67	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000147639

SMART Domains

Protein: ENSMUSP00000123139
Gene: ENSMUSG00000030315

Domain	Start	End	E-Value	Type
TDU	197	212	5.27e-4	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A830035A12Rik	T	C	11: 107,532,055		noncoding transcript	Het
Bbs10	A	G	10: 111,299,859	T278A	probably benign	Het
BC053393	A	G	11: 46,577,380	T94A	probably damaging	Het
Bcl6b	A	G	11: 70,226,103	L450P	probably damaging	Het
Braf	T	G	6: 39,615,720	K674Q	probably damaging	Het
Cep112	C	T	11: 108,519,201	T481I	possibly damaging	Het
Cep135	T	A	5: 76,624,667	M633K	probably benign	Het
Cpped1	T	C	16: 11,805,421	Y278C	probably damaging	Het
Depdc5	T	A	5: 32,904,534		probably null	Het
Dolpp1	C	T	2: 30,396,452	A128V	possibly damaging	Het
E2f5	T	A	3: 14,603,763	D238E	probably benign	Het
Fat4	A	T	3: 38,958,540	D2328V	probably benign	Het
Fbln1	T	A	15: 85,231,556		probably null	Het
Fkbp3	T	C	12: 65,070,004	T53A	probably damaging	Het
Flg2	G	T	3: 93,214,869	G1449C	unknown	Het
G530012D18Rik	G	C	1: 85,577,202		probably benign	Het
Glyctk	A	T	9: 106,157,108		probably benign	Het
Gm37596	C	A	3: 93,692,112	V317L	probably benign	Het
Gm6430	T	C	1: 97,025,572		noncoding transcript	Het
Golga1	C	A	2: 39,019,641		probably null	Het
Gucy2g	A	T	19: 55,237,837	F216I	probably benign	Het
L3mbtl3	A	G	10: 26,313,884	V494A	unknown	Het
Lama2	AATCAGACAGGAG	A	10: 27,212,128		probably benign	Het
Lemd3	A	T	10: 120,925,430	L907Q	possibly damaging	Het
Lrp2	A	T	2: 69,502,517	V1552D	probably damaging	Het
Map3k12	T	C	15: 102,505,402	T45A	probably damaging	Het
Mycbp2	A	T	14: 103,287,228	D665E	probably damaging	Het
Myof	A	G	19: 37,922,978	S1502P	probably damaging	Het
Olfr1178	A	T	2: 88,392,083	M279L	probably benign	Het
Pcdhac2	G	T	18: 37,144,446	V160L	probably benign	Het
Pcnt	T	C	10: 76,374,870	E2473G	possibly damaging	Het
Pitpnm2	T	A	5: 124,152,615	I3L	possibly damaging	Het
Prkd3	C	A	17: 78,983,558	W176L	probably damaging	Het
Prpf39	C	T	12: 65,056,266	A438V	probably damaging	Het
Rpgrip1	T	A	14: 52,147,399	F655I	probably damaging	Het
Rrp12	T	C	19: 41,892,551	Y147C	probably damaging	Het
Sec23b	A	T	2: 144,574,718	N429Y	possibly damaging	Het
Slc2a10	T	A	2: 165,514,764	S115T	probably damaging	Het
Spg11	A	C	2: 122,075,332	D1277E	probably benign	Het
Sspo	A	G	6: 48,460,520	D1279G	probably damaging	Het
St18	T	C	1: 6,827,837	I621T	probably benign	Het
Tbc1d31	T	A	15: 57,920,042	D112E	possibly damaging	Het
Tgm4	A	T	9: 123,056,530	D379V	probably damaging	Het
Thyn1	A	T	9: 27,003,597	D15V	possibly damaging	Het
Tm4sf19	T	C	16: 32,407,894	V167A	possibly damaging	Het
Trim38	A	C	13: 23,791,491	Q471P	probably benign	Het
Trmt1	T	A	8: 84,697,755		probably benign	Het
Ubqlnl	C	T	7: 104,149,718	V191M	probably benign	Het
Usp9y	T	C	Y: 1,336,375	I1500V	probably benign	Het
Vmn1r173	T	A	7: 23,703,016	N225K	probably damaging	Het
Vmn2r22	C	T	6: 123,637,954	G226R	probably damaging	Het
Wnk3	C	A	X: 151,233,213	P555Q	probably benign	Het
Yes1	T	G	5: 32,640,585	Y83D	possibly damaging	Het
Zdhhc15	G	A	X: 104,560,688	R322*	probably null	Het

Other mutations in Vgll4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01454:Vgll4	APN	6	114863996	missense	probably benign	0.10
IGL02080:Vgll4	APN	6	114862798	missense	probably damaging	1.00
IGL02551:Vgll4	APN	6	114862293	missense	probably damaging	1.00
R0946:Vgll4	UTSW	6	114890807	critical splice acceptor site	probably null
R0946:Vgll4	UTSW	6	114890808	critical splice acceptor site	probably null
R1710:Vgll4	UTSW	6	114957934	critical splice donor site	probably null
R1815:Vgll4	UTSW	6	114864059	missense	probably benign	0.05
R1843:Vgll4	UTSW	6	114862795	missense	probably benign	0.22
R1922:Vgll4	UTSW	6	114921335	missense	probably benign	0.29
R5147:Vgll4	UTSW	6	114890615	critical splice donor site	probably null
R5714:Vgll4	UTSW	6	114890776	missense	possibly damaging	0.70
R6080:Vgll4	UTSW	6	114921338	missense	probably benign	0.29
R6954:Vgll4	UTSW	6	114921367	missense	probably damaging	1.00
R7445:Vgll4	UTSW	6	114862196	missense	unknown
R7500:Vgll4	UTSW	6	114862332	missense	probably damaging	1.00
R8207:Vgll4	UTSW	6	114862825	missense	probably damaging	1.00
R8252:Vgll4	UTSW	6	114890734	missense	probably damaging	1.00
R8305:Vgll4	UTSW	6	114890652	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTCTGCACCAGTCACTAAAGTC -3'
(R):5'- CCCGACTGCTGATAACATCC -3'

Sequencing Primer
(F):5'- CCAGTCACTAAAGTCAGCTCG -3'
(R):5'- TGCATAGGTGAAGCTTCCCTCAG -3'

Posted On

2015-07-07