Incidental Mutation 'R4432:Anks6'
| ID |
328648 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Anks6
|
| Ensembl Gene |
ENSMUSG00000066191 |
| Gene Name |
ankyrin repeat and sterile alpha motif domain containing 6 |
| Synonyms |
b2b1801.1Clo, LOC269533, 2210417J20Rik, SamCystin, Samd6 |
| MMRRC Submission |
041701-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4432 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
4 |
| Chromosomal Location |
47015669-47057427 bp(-) (GRCm38) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
G to A
at 47044905 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamine to Stop codon
at position 334
(Q334*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000155271
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000084616]
[ENSMUST00000107747]
[ENSMUST00000229609]
|
| AlphaFold |
Q6GQX6 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000084616
AA Change: Q334*
|
| SMART Domains |
Protein: ENSMUSP00000081665
Gene: ENSMUSG00000066191
AA Change: Q334*
| Domain | Start | End | E-Value | Type |
|---|
|
ANK
|
8 |
37 |
2.39e2 |
SMART |
|
ANK
|
68 |
97 |
5.62e-4 |
SMART |
|
ANK
|
101 |
130 |
2.05e-6 |
SMART |
|
ANK
|
134 |
163 |
1.9e-1 |
SMART |
|
ANK
|
181 |
210 |
8.99e-3 |
SMART |
|
ANK
|
215 |
244 |
7.83e-3 |
SMART |
|
ANK
|
282 |
312 |
5.87e2 |
SMART |
|
ANK
|
316 |
345 |
1.22e-4 |
SMART |
|
ANK
|
350 |
379 |
3.57e-6 |
SMART |
|
ANK
|
383 |
414 |
1.23e3 |
SMART |
|
low complexity region
|
539 |
575 |
N/A |
INTRINSIC |
|
low complexity region
|
619 |
673 |
N/A |
INTRINSIC |
|
SAM
|
700 |
766 |
2.73e-10 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000107747
AA Change: Q334*
|
| SMART Domains |
Protein: ENSMUSP00000103376
Gene: ENSMUSG00000066191
AA Change: Q334*
| Domain | Start | End | E-Value | Type |
|---|
|
ANK
|
8 |
37 |
2.39e2 |
SMART |
|
ANK
|
68 |
97 |
5.62e-4 |
SMART |
|
ANK
|
101 |
130 |
2.05e-6 |
SMART |
|
ANK
|
134 |
163 |
1.9e-1 |
SMART |
|
ANK
|
181 |
210 |
8.99e-3 |
SMART |
|
ANK
|
215 |
244 |
7.83e-3 |
SMART |
|
ANK
|
282 |
312 |
5.87e2 |
SMART |
|
ANK
|
316 |
345 |
1.22e-4 |
SMART |
|
ANK
|
350 |
379 |
3.57e-6 |
SMART |
|
ANK
|
383 |
414 |
1.23e3 |
SMART |
|
low complexity region
|
607 |
643 |
N/A |
INTRINSIC |
|
low complexity region
|
687 |
741 |
N/A |
INTRINSIC |
|
low complexity region
|
748 |
768 |
N/A |
INTRINSIC |
|
Blast:SAM
|
769 |
796 |
1e-9 |
BLAST |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000119580
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154664
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000229609
AA Change: Q334*
|
| Meta Mutation Damage Score |
0.9755 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.8%
|
| Validation Efficiency |
100% (42/42) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein containing multiple ankyrin repeats and a SAM domain. It is thought that this protein may localize to the proximal region of the primary cilium, and may play a role in renal and cardiovascular development. Mutations in this gene have been shown to cause a form of nephronophthisis (NPHP16), a chronic tubulo-interstitial nephritis. [provided by RefSeq, Jul 2015]
PHENOTYPE: Mice homozygous for an ENU-induced mutation exhibit complex congenital heart defects including TGA, DORV and septal defects associated with heterotaxy. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca6 |
T |
C |
11: 110,241,588 (GRCm38) |
M294V |
probably benign |
Het |
| Abcc5 |
A |
T |
16: 20,368,187 (GRCm38) |
|
probably null |
Het |
| Acsm4 |
A |
C |
7: 119,711,387 (GRCm38) |
E499A |
probably damaging |
Het |
| Adamtsl4 |
T |
C |
3: 95,681,759 (GRCm38) |
|
probably null |
Het |
| Ank2 |
A |
T |
3: 126,947,806 (GRCm38) |
|
probably benign |
Het |
| Cadps2 |
T |
A |
6: 23,626,738 (GRCm38) |
I155L |
probably damaging |
Het |
| Casp4 |
G |
A |
9: 5,323,653 (GRCm38) |
R74H |
probably damaging |
Het |
| Cdk14 |
A |
G |
5: 5,036,427 (GRCm38) |
W298R |
probably damaging |
Het |
| Chia1 |
A |
G |
3: 106,115,325 (GRCm38) |
N12D |
probably benign |
Het |
| Cibar2 |
C |
A |
8: 120,174,855 (GRCm38) |
R37L |
probably damaging |
Het |
| Cyp3a59 |
A |
G |
5: 146,104,786 (GRCm38) |
D380G |
probably benign |
Het |
| Dnm2 |
T |
C |
9: 21,491,304 (GRCm38) |
|
probably benign |
Het |
| Dnm3 |
T |
C |
1: 161,991,997 (GRCm38) |
|
probably benign |
Het |
| Dpp4 |
A |
G |
2: 62,345,112 (GRCm38) |
Y660H |
probably damaging |
Het |
| H6pd |
T |
G |
4: 149,995,758 (GRCm38) |
Y202S |
probably damaging |
Het |
| Hnrnpa0 |
T |
C |
13: 58,127,937 (GRCm38) |
K126R |
probably benign |
Het |
| Insc |
C |
T |
7: 114,769,055 (GRCm38) |
|
probably benign |
Het |
| Lrrc45 |
G |
A |
11: 120,715,221 (GRCm38) |
|
probably null |
Het |
| Mapkap1 |
T |
C |
2: 34,619,863 (GRCm38) |
L263P |
probably damaging |
Het |
| Nmur1 |
A |
G |
1: 86,387,565 (GRCm38) |
S160P |
probably damaging |
Het |
| Or4a81 |
A |
T |
2: 89,788,734 (GRCm38) |
M206K |
possibly damaging |
Het |
| Or4g7 |
T |
A |
2: 111,479,412 (GRCm38) |
C209* |
probably null |
Het |
| Pcdhb15 |
A |
G |
18: 37,475,512 (GRCm38) |
N599S |
probably damaging |
Het |
| Pcid2 |
T |
C |
8: 13,085,421 (GRCm38) |
D196G |
probably damaging |
Het |
| Pcolce2 |
T |
C |
9: 95,681,557 (GRCm38) |
F199L |
probably damaging |
Het |
| Phf11c |
A |
T |
14: 59,390,935 (GRCm38) |
N88K |
possibly damaging |
Het |
| Prl8a8 |
T |
A |
13: 27,510,480 (GRCm38) |
Y109F |
probably benign |
Het |
| Rasa2 |
A |
G |
9: 96,542,407 (GRCm38) |
|
probably benign |
Het |
| Samhd1 |
T |
C |
2: 157,104,893 (GRCm38) |
D558G |
probably damaging |
Het |
| Slc1a1 |
T |
C |
19: 28,902,709 (GRCm38) |
F263S |
probably benign |
Het |
| Slc27a3 |
G |
A |
3: 90,387,340 (GRCm38) |
T408M |
probably damaging |
Het |
| Slc4a7 |
T |
A |
14: 14,757,323 (GRCm38) |
N520K |
probably damaging |
Het |
| Szt2 |
A |
G |
4: 118,384,231 (GRCm38) |
S1679P |
probably damaging |
Het |
| Trmt9b |
A |
T |
8: 36,498,478 (GRCm38) |
I51F |
probably damaging |
Het |
| Vmn1r218 |
T |
C |
13: 23,137,242 (GRCm38) |
F173S |
possibly damaging |
Het |
| Vmn2r32 |
T |
A |
7: 7,479,919 (GRCm38) |
N19Y |
probably damaging |
Het |
|
| Other mutations in Anks6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00465:Anks6
|
APN |
4 |
47,046,054 (GRCm38) |
missense |
probably damaging |
0.98 |
|
IGL01886:Anks6
|
APN |
4 |
47,044,850 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02903:Anks6
|
APN |
4 |
47,045,004 (GRCm38) |
missense |
probably damaging |
1.00 |
|
PIT4131001:Anks6
|
UTSW |
4 |
47,027,109 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0632:Anks6
|
UTSW |
4 |
47,033,167 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R1220:Anks6
|
UTSW |
4 |
47,025,767 (GRCm38) |
splice site |
probably benign |
|
|
R1398:Anks6
|
UTSW |
4 |
47,044,926 (GRCm38) |
missense |
possibly damaging |
0.75 |
|
R1479:Anks6
|
UTSW |
4 |
47,044,874 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1519:Anks6
|
UTSW |
4 |
47,027,152 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1713:Anks6
|
UTSW |
4 |
47,039,726 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1781:Anks6
|
UTSW |
4 |
47,043,639 (GRCm38) |
missense |
possibly damaging |
0.87 |
|
R1853:Anks6
|
UTSW |
4 |
47,049,387 (GRCm38) |
missense |
probably benign |
0.00 |
|
R2364:Anks6
|
UTSW |
4 |
47,027,248 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R3790:Anks6
|
UTSW |
4 |
47,049,212 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R4700:Anks6
|
UTSW |
4 |
47,033,127 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R4847:Anks6
|
UTSW |
4 |
47,033,266 (GRCm38) |
missense |
probably benign |
|
|
R4876:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4877:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4878:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4879:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4961:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4962:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4968:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4970:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4971:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5092:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5113:Anks6
|
UTSW |
4 |
47,030,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5389:Anks6
|
UTSW |
4 |
47,038,900 (GRCm38) |
splice site |
probably benign |
|
|
R5569:Anks6
|
UTSW |
4 |
47,045,007 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5857:Anks6
|
UTSW |
4 |
47,039,736 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
R5977:Anks6
|
UTSW |
4 |
47,035,748 (GRCm38) |
missense |
probably benign |
0.11 |
|
R5978:Anks6
|
UTSW |
4 |
47,049,252 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6933:Anks6
|
UTSW |
4 |
47,049,164 (GRCm38) |
missense |
probably benign |
0.25 |
|
R7175:Anks6
|
UTSW |
4 |
47,046,268 (GRCm38) |
splice site |
probably null |
|
|
R7454:Anks6
|
UTSW |
4 |
47,038,919 (GRCm38) |
missense |
unknown |
|
|
R7874:Anks6
|
UTSW |
4 |
47,049,275 (GRCm38) |
missense |
unknown |
|
|
R8146:Anks6
|
UTSW |
4 |
47,043,605 (GRCm38) |
missense |
unknown |
|
|
R8437:Anks6
|
UTSW |
4 |
47,030,705 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9454:Anks6
|
UTSW |
4 |
47,016,789 (GRCm38) |
missense |
possibly damaging |
0.86 |
|
R9462:Anks6
|
UTSW |
4 |
47,033,142 (GRCm38) |
missense |
unknown |
|
|
R9567:Anks6
|
UTSW |
4 |
47,044,880 (GRCm38) |
missense |
unknown |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GCTGGCTGAATAAAACCCAC -3'
(R):5'- ATAAATGACCTTGTGGGGCC -3'
Sequencing Primer
(F):5'- TGCATGTCTTGATGTCCTCACAG -3'
(R):5'- CAGGGGCTGTGTGTCAC -3'
|
| Posted On |
2015-07-21 |
Incidental Mutation