Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00579:Cfap53'

3295

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cfap53

Ensembl Gene

ENSMUSG00000035394

Gene Name

cilia and flagella associated protein 53

Synonyms

4933415I03Rik, Ccdc11

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.487) question?

Stock #

IGL00579

Quality Score

Status

Chromosome

Chromosomal Location

74416171-74493055 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 74438611 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 263 (K263*)

Ref Sequence

ENSEMBL: ENSMUSP00000110545 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000114895] [ENSMUST00000176435]

AlphaFold

Q9D439

Predicted Effect

probably null
Transcript: ENSMUST00000114895
AA Change: K263*

SMART Domains

Protein: ENSMUSP00000110545
Gene: ENSMUSG00000035394
AA Change: K263*

Domain	Start	End	E-Value	Type
low complexity region	131	145	N/A	INTRINSIC
Pfam:TPH	160	495	1.3e-20	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122178

Predicted Effect

probably benign
Transcript: ENSMUST00000176435

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the CFAP53 family. It was found to be differentially expressed by the ciliated cells of frog epidermis and in skin fibroblasts from human. Mutations in this gene are associated with visceral heterotaxy-6, which implicates this gene in determination of left-right asymmetric patterning. [provided by RefSeq, Aug 2015]

Allele List at MGI

Other mutations in this stock

Total: 27 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcf2	T	C	5: 24,773,794 (GRCm39)	E365G	possibly damaging	Het
Adamts12	T	C	15: 11,152,100 (GRCm39)	Y197H	probably benign	Het
Cept1	A	T	3: 106,413,119 (GRCm39)	V202E	possibly damaging	Het
Dennd3	T	C	15: 73,412,691 (GRCm39)	I451T	possibly damaging	Het
Dync2h1	A	C	9: 7,035,728 (GRCm39)		probably benign	Het
Egf	T	A	3: 129,491,447 (GRCm39)	H850L	probably benign	Het
Gm11595	T	C	11: 99,662,868 (GRCm39)	T271A	unknown	Het
Gorab	T	C	1: 163,222,256 (GRCm39)	E142G	probably damaging	Het
Gpat4	A	G	8: 23,672,791 (GRCm39)	S20P	probably damaging	Het
Gpr83	T	C	9: 14,771,897 (GRCm39)	V23A	probably benign	Het
Il13ra2	A	G	X: 146,177,386 (GRCm39)	Y146H	probably damaging	Het
Kcnj16	C	T	11: 110,916,034 (GRCm39)	T232M	probably benign	Het
Mdfic	A	T	6: 15,741,073 (GRCm39)	I61F	possibly damaging	Het
Mmp3	G	T	9: 7,445,894 (GRCm39)		probably benign	Het
Olr1	C	T	6: 129,470,486 (GRCm39)	R227K	probably benign	Het
Otof	T	A	5: 30,556,666 (GRCm39)	I257F	possibly damaging	Het
Oxsr1	T	A	9: 119,088,277 (GRCm39)	R43S	probably damaging	Het
Pacc1	T	C	1: 191,060,405 (GRCm39)	V21A	unknown	Het
Prkdc	A	G	16: 15,482,103 (GRCm39)	D382G	probably damaging	Het
Slc35b2	G	T	17: 45,875,886 (GRCm39)	V81L	probably damaging	Het
Thumpd3	G	A	6: 113,024,622 (GRCm39)	R72H	possibly damaging	Het
Tsga10	G	A	1: 37,874,534 (GRCm39)	T117I	probably damaging	Het
Vps13a	T	A	19: 16,684,726 (GRCm39)	T953S	probably benign	Het
Wdr62	A	C	7: 29,967,320 (GRCm39)	C311W	probably damaging	Het
Wdr74	A	G	19: 8,716,830 (GRCm39)	T247A	possibly damaging	Het
Zbtb26	A	T	2: 37,326,454 (GRCm39)	V194D	possibly damaging	Het
Zfp639	A	T	3: 32,574,626 (GRCm39)	E417V	probably damaging	Het

Other mutations in Cfap53

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00667:Cfap53	APN	18	74,433,263 (GRCm39)	missense	probably damaging	1.00
IGL00917:Cfap53	APN	18	74,432,367 (GRCm39)	missense	probably benign	0.08
R0009:Cfap53	UTSW	18	74,432,247 (GRCm39)	missense	probably benign	0.00
R0009:Cfap53	UTSW	18	74,432,247 (GRCm39)	missense	probably benign	0.00
R0035:Cfap53	UTSW	18	74,433,278 (GRCm39)	missense	probably damaging	1.00
R0035:Cfap53	UTSW	18	74,433,278 (GRCm39)	missense	probably damaging	1.00
R0048:Cfap53	UTSW	18	74,432,244 (GRCm39)	missense	probably benign	0.09
R0601:Cfap53	UTSW	18	74,433,221 (GRCm39)	missense	possibly damaging	0.94
R0939:Cfap53	UTSW	18	74,438,801 (GRCm39)	missense	probably null	0.72
R1166:Cfap53	UTSW	18	74,433,251 (GRCm39)	missense	possibly damaging	0.68
R1588:Cfap53	UTSW	18	74,440,444 (GRCm39)	missense	probably benign
R2105:Cfap53	UTSW	18	74,416,294 (GRCm39)	missense	possibly damaging	0.73
R2186:Cfap53	UTSW	18	74,462,576 (GRCm39)	splice site	probably null
R3723:Cfap53	UTSW	18	74,492,640 (GRCm39)	missense	probably benign	0.13
R3724:Cfap53	UTSW	18	74,492,640 (GRCm39)	missense	probably benign	0.13
R3904:Cfap53	UTSW	18	74,440,445 (GRCm39)	missense	probably damaging	0.99
R5156:Cfap53	UTSW	18	74,492,838 (GRCm39)	utr 3 prime	probably benign
R5262:Cfap53	UTSW	18	74,462,530 (GRCm39)	missense	probably benign	0.39
R5928:Cfap53	UTSW	18	74,492,811 (GRCm39)	missense	possibly damaging	0.90
R6405:Cfap53	UTSW	18	74,492,677 (GRCm39)	missense	probably damaging	1.00
R6653:Cfap53	UTSW	18	74,433,280 (GRCm39)	missense	probably damaging	0.97
R6675:Cfap53	UTSW	18	74,440,447 (GRCm39)	critical splice donor site	probably null
R7011:Cfap53	UTSW	18	74,462,564 (GRCm39)	missense	probably benign	0.13
R7397:Cfap53	UTSW	18	74,416,294 (GRCm39)	missense	possibly damaging	0.73
R8943:Cfap53	UTSW	18	74,432,253 (GRCm39)	missense	probably damaging	0.97
R9132:Cfap53	UTSW	18	74,416,272 (GRCm39)	missense	probably damaging	0.98
R9159:Cfap53	UTSW	18	74,416,272 (GRCm39)	missense	probably damaging	0.98
R9389:Cfap53	UTSW	18	74,432,414 (GRCm39)	critical splice donor site	probably null
R9548:Cfap53	UTSW	18	74,438,040 (GRCm39)	missense	possibly damaging	0.59
R9679:Cfap53	UTSW	18	74,492,656 (GRCm39)	missense	possibly damaging	0.89
R9792:Cfap53	UTSW	18	74,438,741 (GRCm39)	missense	probably benign	0.44
R9793:Cfap53	UTSW	18	74,438,741 (GRCm39)	missense	probably benign	0.44
R9795:Cfap53	UTSW	18	74,438,741 (GRCm39)	missense	probably benign	0.44
Z1177:Cfap53	UTSW	18	74,438,623 (GRCm39)	nonsense	probably null

Posted On

2012-04-20