Incidental Mutation 'R4508:Vmn1r90'
ID 331067
Institutional Source Beutler Lab
Gene Symbol Vmn1r90
Ensembl Gene ENSMUSG00000100586
Gene Name vomeronasal 1 receptor 90
Synonyms B430211C08Rik
MMRRC Submission 041757-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.052) question?
Stock # R4508 (G1)
Quality Score 225
Status Validated
Chromosome 7
Chromosomal Location 14295167-14296096 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 14296084 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 5 (N5D)
Ref Sequence ENSEMBL: ENSMUSP00000153726 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000185220] [ENSMUST00000226264] [ENSMUST00000226510] [ENSMUST00000227788] [ENSMUST00000227855] [ENSMUST00000226802] [ENSMUST00000227692] [ENSMUST00000227566]
AlphaFold A0A087WR36
Predicted Effect noncoding transcript
Transcript: ENSMUST00000044683
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173220
Predicted Effect noncoding transcript
Transcript: ENSMUST00000173766
Predicted Effect noncoding transcript
Transcript: ENSMUST00000185025
Predicted Effect probably benign
Transcript: ENSMUST00000185220
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000140455
Gene: ENSMUSG00000100586
AA Change: N5D

DomainStartEndE-ValueType
Pfam:TAS2R 8 296 3.9e-9 PFAM
Pfam:V1R 41 295 2.7e-13 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226264
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000226510
Predicted Effect probably benign
Transcript: ENSMUST00000227788
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000227855
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000226802
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect probably benign
Transcript: ENSMUST00000227692
AA Change: N5D

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226981
Predicted Effect probably benign
Transcript: ENSMUST00000227566
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 95.3%
Validation Efficiency 100% (50/50)
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd12 A G 2: 150,746,275 (GRCm39) probably benign Het
Amer3 A G 1: 34,627,380 (GRCm39) R540G probably benign Het
Ank C T 15: 27,565,063 (GRCm39) R255W probably damaging Het
Ank3 A C 10: 69,728,200 (GRCm39) I629L probably damaging Het
Arhgap11a T A 2: 113,672,387 (GRCm39) N194Y probably damaging Het
BB014433 T C 8: 15,092,095 (GRCm39) T253A possibly damaging Het
Ccdc40 C A 11: 119,133,335 (GRCm39) D534E probably damaging Het
Chrna2 C A 14: 66,383,902 (GRCm39) N106K probably damaging Het
Clec2f C A 6: 128,997,474 (GRCm39) noncoding transcript Het
Cnnm2 G A 19: 46,865,709 (GRCm39) D766N probably benign Het
Ctc1 A G 11: 68,906,943 (GRCm39) probably null Het
Ddc C T 11: 11,769,393 (GRCm39) probably null Het
Doc2g G A 19: 4,054,036 (GRCm39) probably benign Het
Ep400 T C 5: 110,851,481 (GRCm39) T1334A unknown Het
Epdr1 T C 13: 19,778,659 (GRCm39) I44V probably benign Het
Fbp2 A T 13: 62,989,679 (GRCm39) I209N probably damaging Het
Garin1b T C 6: 29,323,764 (GRCm39) V163A probably benign Het
Get1 T A 16: 95,946,899 (GRCm39) probably benign Het
Gldc G T 19: 30,120,807 (GRCm39) Q375K probably damaging Het
Hc A C 2: 34,903,077 (GRCm39) V1058G possibly damaging Het
Hydin T A 8: 111,245,886 (GRCm39) S2200T possibly damaging Het
Kcnc1 C T 7: 46,077,712 (GRCm39) P505S probably benign Het
Kifc3 T C 8: 95,834,048 (GRCm39) probably null Het
Klhl10 A G 11: 100,333,002 (GRCm39) E49G possibly damaging Het
Lhx5 T C 5: 120,573,499 (GRCm39) S161P probably damaging Het
Lilra6 G T 7: 3,915,028 (GRCm39) Y455* probably null Het
Lzts1 C T 8: 69,588,270 (GRCm39) R562H probably benign Het
Muc6 G A 7: 141,226,356 (GRCm39) probably benign Het
Ogfod2 C T 5: 124,251,317 (GRCm39) Q74* probably null Het
Or4f56 A C 2: 111,703,947 (GRCm39) D84E probably damaging Het
Or5h17 T A 16: 58,820,138 (GRCm39) V30E probably benign Het
Polr2a T C 11: 69,633,385 (GRCm39) probably null Het
Ptpre T C 7: 135,270,832 (GRCm39) L329P probably damaging Het
Rnh1 T C 7: 140,744,456 (GRCm39) Q73R possibly damaging Het
Scly G A 1: 91,236,047 (GRCm39) V100I possibly damaging Het
Sos2 A T 12: 69,682,435 (GRCm39) L261* probably null Het
Sp1 A C 15: 102,317,747 (GRCm39) Q422P possibly damaging Het
Sp3 A T 2: 72,800,741 (GRCm39) F468Y probably damaging Het
Tenm2 T C 11: 35,899,172 (GRCm39) Y2662C possibly damaging Het
Tmem38a C T 8: 73,326,005 (GRCm39) P20S possibly damaging Het
Tmprss2 C A 16: 97,371,627 (GRCm39) G281C probably damaging Het
Tmprss6 A T 15: 78,343,978 (GRCm39) Y183N probably damaging Het
Ttn A T 2: 76,580,684 (GRCm39) L23403Q probably damaging Het
Ubqlnl C T 7: 103,798,925 (GRCm39) V191M probably benign Het
Vps13b A G 15: 35,709,819 (GRCm39) D1922G possibly damaging Het
Other mutations in Vmn1r90
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02395:Vmn1r90 APN 7 14,295,822 (GRCm39) missense probably damaging 1.00
IGL03282:Vmn1r90 APN 7 14,296,093 (GRCm39) missense possibly damaging 0.92
IGL03282:Vmn1r90 APN 7 14,295,426 (GRCm39) missense probably benign 0.36
IGL03365:Vmn1r90 APN 7 14,295,229 (GRCm39) missense probably damaging 0.99
R2519:Vmn1r90 UTSW 7 14,295,643 (GRCm39) missense probably damaging 1.00
R2996:Vmn1r90 UTSW 7 14,295,459 (GRCm39) missense probably damaging 1.00
R4086:Vmn1r90 UTSW 7 14,297,219 (GRCm39) splice site probably benign
R4303:Vmn1r90 UTSW 7 14,295,495 (GRCm39) nonsense probably null
R4551:Vmn1r90 UTSW 7 14,295,894 (GRCm39) missense possibly damaging 0.88
R4672:Vmn1r90 UTSW 7 14,295,493 (GRCm39) missense probably benign 0.25
R4915:Vmn1r90 UTSW 7 14,295,950 (GRCm39) missense possibly damaging 0.82
R5227:Vmn1r90 UTSW 7 14,295,601 (GRCm39) missense possibly damaging 0.50
R5629:Vmn1r90 UTSW 7 14,296,011 (GRCm39) missense possibly damaging 0.48
R5888:Vmn1r90 UTSW 7 14,295,780 (GRCm39) missense probably damaging 1.00
R7532:Vmn1r90 UTSW 7 14,295,189 (GRCm39) missense possibly damaging 0.75
R7644:Vmn1r90 UTSW 7 14,295,616 (GRCm39) nonsense probably null
R9429:Vmn1r90 UTSW 7 14,295,647 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GTTTGGGAACACAGTCATGAATAG -3'
(R):5'- ATTCAGTGGCACAAAATCATGC -3'

Sequencing Primer
(F):5'- TGAATAGAATTAAGATGCTGGACAC -3'
(R):5'- GTGGCACAAAATCATGCAGTATTTTC -3'
Posted On 2015-07-21