Mutagenetix > Incidental Mutations

Incidental Mutation 'R4506:Atr'

332024

Institutional Source

Beutler Lab

Gene Symbol

Atr

Ensembl Gene

ENSMUSG00000032409

Gene Name

ataxia telangiectasia and Rad3 related

Synonyms

MMRRC Submission

041584-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R4506 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

95857597-95951781 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 95865237 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Serine at position 191 (C191S)

Ref Sequence

ENSEMBL: ENSMUSP00000034980 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034980] [ENSMUST00000215311]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000034980
AA Change: C191S

PolyPhen 2 Score 0.206 (Sensitivity: 0.92; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000034980
Gene: ENSMUSG00000032409
AA Change: C191S

Domain	Start	End	E-Value	Type
low complexity region	431	449	N/A	INTRINSIC
low complexity region	889	897	N/A	INTRINSIC
low complexity region	998	1013	N/A	INTRINSIC
UME	1119	1225	2.3e-43	SMART
low complexity region	1352	1362	N/A	INTRINSIC
Pfam:FAT	1771	2092	9.2e-51	PFAM
PI3Kc	2320	2630	7.51e-124	SMART
FATC	2609	2641	6.22e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000185473

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186061

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187356

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189602

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000191269

Predicted Effect

probably benign
Transcript: ENSMUST00000215311
AA Change: C191S

PolyPhen 2 Score 0.074 (Sensitivity: 0.93; Specificity: 0.85)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 94.8%

Validation Efficiency

98% (42/43)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs the PI3/PI4-kinase family, and is most closely related to ATM, a protein kinase encoded by the gene mutated in ataxia telangiectasia. This protein and ATM share similarity with Schizosaccharomyces pombe rad3, a cell cycle checkpoint gene required for cell cycle arrest and DNA damage repair in response to DNA damage. This kinase has been shown to phosphorylate checkpoint kinase CHK1, checkpoint proteins RAD17, and RAD9, as well as tumor suppressor protein BRCA1. Mutations of this gene are associated with Seckel syndrome. An alternatively spliced transcript variant of this gene has been reported, however, its full length nature is not known. Transcript variants utilizing alternative polyA sites exist. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit early embryonic lethality. Mice heterozygous for a knock-out allele exhibit premature death and increased tumor incidence. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 38 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700012B07Rik	G	T	11: 109,794,261	P137T	probably damaging	Het
Abcc5	A	T	16: 20,333,695	I1367N	probably damaging	Het
Ace	T	A	11: 105,976,666	L152Q	probably damaging	Het
Adam19	G	A	11: 46,118,444	D232N	possibly damaging	Het
Anapc4	A	T	5: 52,835,730	N61I	possibly damaging	Het
Ap5m1	T	C	14: 49,073,761	V96A	probably damaging	Het
Carmil3	GGACGA	GGA	14: 55,499,476		probably benign	Het
Cnot6l	A	T	5: 96,086,174	V326E	possibly damaging	Het
Fcer2a	A	T	8: 3,688,603		probably null	Het
Fgfr3	A	G	5: 33,729,999	T221A	probably damaging	Het
Gm6632	C	T	5: 59,054,478		noncoding transcript	Het
Gm8909	A	T	17: 36,161,480		probably benign	Het
Gpr158	T	A	2: 21,826,999	M970K	probably damaging	Het
Ip6k3	A	T	17: 27,145,180	L298Q	possibly damaging	Het
Itpr1	A	G	6: 108,432,686	D1727G	probably damaging	Het
Kdm2b	T	C	5: 122,888,625	T589A	possibly damaging	Het
Krtcap2	A	G	3: 89,246,256		probably benign	Het
Map3k13	A	G	16: 21,922,178	S752G	probably benign	Het
Mvb12a	G	T	8: 71,543,459	A86S	probably benign	Het
Nktr	T	A	9: 121,748,883		probably benign	Het
Olfr160	C	T	9: 37,711,464	V272I	probably benign	Het
Olfr393	A	T	11: 73,847,695	C143*	probably null	Het
Parp4	T	A	14: 56,652,304	N1847K	unknown	Het
Pcdhga8	G	C	18: 37,816,763	V411L	probably damaging	Het
Piwil4	T	C	9: 14,725,963	T352A	probably damaging	Het
Ric8a	A	G	7: 140,858,516	I223V	probably benign	Het
Slc25a51	C	T	4: 45,399,768	V141M	probably benign	Het
Slc7a5	A	T	8: 121,887,495		probably null	Het
Slc7a9	A	T	7: 35,453,420	T88S	probably damaging	Het
Tbrg1	T	A	9: 37,654,395	E87V	probably damaging	Het
Tnfsf4	T	C	1: 161,417,174	S145P	probably damaging	Het
Tomm34	C	A	2: 164,054,372		probably null	Het
Trpv3	A	G	11: 73,295,324	N647S	probably benign	Het
Upf1	G	A	8: 70,337,566	R637C	probably damaging	Het
Vmn2r23	A	T	6: 123,702,925	Q35H	probably damaging	Het
Wdtc1	C	T	4: 133,308,819	V137M	probably damaging	Het
Zfp276	G	A	8: 123,264,927		probably null	Het
Zfp90	C	T	8: 106,424,864	P403L	possibly damaging	Het

Other mutations in Atr

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00640:Atr	APN	9	95865052	missense	probably damaging	1.00
IGL00922:Atr	APN	9	95907345	missense	probably damaging	0.97
IGL01020:Atr	APN	9	95862783	missense	probably damaging	1.00
IGL01345:Atr	APN	9	95940949	missense	probably damaging	1.00
IGL01364:Atr	APN	9	95865624	missense	probably benign	0.29
IGL01456:Atr	APN	9	95950565	missense	possibly damaging	0.62
IGL01534:Atr	APN	9	95865546	missense	probably damaging	0.99
IGL01761:Atr	APN	9	95951448	splice site	probably benign
IGL01791:Atr	APN	9	95921781	missense	probably benign	0.05
IGL01831:Atr	APN	9	95870754	missense	probably benign	0.18
IGL01973:Atr	APN	9	95871674	missense	probably damaging	1.00
IGL02008:Atr	APN	9	95881420	splice site	probably benign
IGL02016:Atr	APN	9	95927175	missense	probably benign	0.09
IGL02035:Atr	APN	9	95866682	missense	probably benign	0.01
IGL02058:Atr	APN	9	95871487	missense	probably damaging	0.99
IGL02081:Atr	APN	9	95883205	missense	probably damaging	1.00
IGL02224:Atr	APN	9	95878629	missense	probably damaging	0.98
IGL02234:Atr	APN	9	95947250	splice site	probably benign
IGL02367:Atr	APN	9	95899141	nonsense	probably null
IGL02621:Atr	APN	9	95908400	missense	probably benign	0.00
IGL02728:Atr	APN	9	95936475	missense	probably damaging	1.00
IGL02833:Atr	APN	9	95862852	missense	probably damaging	1.00
IGL02939:Atr	APN	9	95865261	missense	probably benign
IGL03107:Atr	APN	9	95897730	missense	probably benign	0.28
IGL03382:Atr	APN	9	95920822	nonsense	probably null
PIT4812001:Atr	UTSW	9	95910649	missense	probably benign	0.41
R0042:Atr	UTSW	9	95927356	splice site	probably benign
R0042:Atr	UTSW	9	95927356	splice site	probably benign
R0281:Atr	UTSW	9	95937566	missense	probably benign	0.26
R0282:Atr	UTSW	9	95862798	missense	probably benign	0.12
R0512:Atr	UTSW	9	95935526	missense	probably damaging	0.99
R0547:Atr	UTSW	9	95899165	splice site	probably benign
R0567:Atr	UTSW	9	95865829	missense	probably benign	0.00
R0631:Atr	UTSW	9	95874777	missense	possibly damaging	0.92
R1116:Atr	UTSW	9	95867636	nonsense	probably null
R1171:Atr	UTSW	9	95907323	missense	probably damaging	1.00
R1241:Atr	UTSW	9	95950636	missense	probably benign	0.08
R1345:Atr	UTSW	9	95920355	missense	probably benign	0.25
R1400:Atr	UTSW	9	95862848	missense	probably benign	0.32
R1413:Atr	UTSW	9	95932442	missense	probably damaging	1.00
R1527:Atr	UTSW	9	95870043	missense	possibly damaging	0.82
R1557:Atr	UTSW	9	95871449	missense	probably damaging	1.00
R1591:Atr	UTSW	9	95945385	missense	probably damaging	1.00
R1602:Atr	UTSW	9	95951557	missense	probably damaging	1.00
R1605:Atr	UTSW	9	95936463	missense	probably damaging	1.00
R1670:Atr	UTSW	9	95861456	missense	probably benign	0.38
R1709:Atr	UTSW	9	95871076	missense	probably benign	0.00
R1728:Atr	UTSW	9	95897581	missense	probably benign	0.01
R1729:Atr	UTSW	9	95897581	missense	probably benign	0.01
R1739:Atr	UTSW	9	95897581	missense	probably benign	0.01
R1816:Atr	UTSW	9	95866694	missense	probably benign	0.00
R1824:Atr	UTSW	9	95936421	missense	probably damaging	1.00
R1844:Atr	UTSW	9	95905817	missense	probably benign	0.01
R1857:Atr	UTSW	9	95865097	missense	probably damaging	1.00
R1858:Atr	UTSW	9	95865097	missense	probably damaging	1.00
R1866:Atr	UTSW	9	95870605	splice site	probably null
R1913:Atr	UTSW	9	95866733	missense	probably benign	0.01
R2042:Atr	UTSW	9	95870022	missense	probably benign	0.00
R2210:Atr	UTSW	9	95907300	missense	probably damaging	1.00
R2230:Atr	UTSW	9	95920765	missense	probably damaging	1.00
R2361:Atr	UTSW	9	95871157	missense	probably benign	0.41
R2399:Atr	UTSW	9	95871599	missense	probably benign	0.00
R2431:Atr	UTSW	9	95862892	missense	probably benign	0.24
R2860:Atr	UTSW	9	95874243	missense	probably benign	0.07
R2861:Atr	UTSW	9	95874243	missense	probably benign	0.07
R3019:Atr	UTSW	9	95905818	missense	possibly damaging	0.52
R3684:Atr	UTSW	9	95920400	missense	probably damaging	0.96
R4155:Atr	UTSW	9	95888124	nonsense	probably null
R4295:Atr	UTSW	9	95874426	missense	probably benign	0.04
R4359:Atr	UTSW	9	95951536	missense	probably damaging	1.00
R4523:Atr	UTSW	9	95862863	missense	probably damaging	1.00
R4536:Atr	UTSW	9	95874418	missense	probably benign	0.26
R4588:Atr	UTSW	9	95865667	missense	probably benign
R4646:Atr	UTSW	9	95871197	critical splice donor site	probably null
R4702:Atr	UTSW	9	95920355	missense	possibly damaging	0.92
R4743:Atr	UTSW	9	95862792	missense	probably benign	0.14
R4782:Atr	UTSW	9	95862797	missense	probably benign	0.00
R4928:Atr	UTSW	9	95907299	missense	probably damaging	1.00
R5031:Atr	UTSW	9	95865702	missense	probably damaging	0.98
R5138:Atr	UTSW	9	95937596	missense	probably benign	0.15
R5188:Atr	UTSW	9	95921725	missense	probably benign	0.00
R5219:Atr	UTSW	9	95881238	missense	probably damaging	0.99
R5307:Atr	UTSW	9	95878544	missense	probably benign	0.01
R5414:Atr	UTSW	9	95870704	missense	probably benign	0.00
R5628:Atr	UTSW	9	95874226	nonsense	probably null
R5664:Atr	UTSW	9	95905813	missense	probably benign	0.00
R5678:Atr	UTSW	9	95951487	nonsense	probably null
R5724:Atr	UTSW	9	95866588	missense	probably damaging	1.00
R5759:Atr	UTSW	9	95874402	missense	probably benign	0.01
R5763:Atr	UTSW	9	95945123	missense	probably benign	0.04
R5922:Atr	UTSW	9	95903682	missense	probably benign	0.00
R6051:Atr	UTSW	9	95908369	missense	possibly damaging	0.85
R6161:Atr	UTSW	9	95865319	missense	probably benign
R6171:Atr	UTSW	9	95881271	nonsense	probably null
R6532:Atr	UTSW	9	95908408	missense	probably benign
R6774:Atr	UTSW	9	95927213	missense	probably benign	0.00
R6894:Atr	UTSW	9	95927197	missense	probably damaging	1.00
R6930:Atr	UTSW	9	95866635	missense	probably benign	0.21
R7018:Atr	UTSW	9	95866694	missense	probably benign	0.17
R7056:Atr	UTSW	9	95862863	missense	probably damaging	1.00
R7103:Atr	UTSW	9	95865372	missense	probably damaging	0.98
R7154:Atr	UTSW	9	95865045	missense	probably benign
R7157:Atr	UTSW	9	95869900	missense	probably benign	0.00
R7188:Atr	UTSW	9	95862791	nonsense	probably null
R7189:Atr	UTSW	9	95862791	nonsense	probably null
R7300:Atr	UTSW	9	95865370	missense	probably benign	0.00
R7337:Atr	UTSW	9	95871448	missense	probably damaging	1.00
R7584:Atr	UTSW	9	95942713	missense	probably damaging	1.00
R7602:Atr	UTSW	9	95907383	missense	possibly damaging	0.64
R7633:Atr	UTSW	9	95947118	missense	probably damaging	1.00
R7640:Atr	UTSW	9	95907293	splice site	probably null
R7677:Atr	UTSW	9	95885462	missense	probably damaging	1.00
R7699:Atr	UTSW	9	95875690	nonsense	probably null
R7700:Atr	UTSW	9	95875690	nonsense	probably null
R7790:Atr	UTSW	9	95874180	missense	probably damaging	1.00
R8027:Atr	UTSW	9	95865756	missense	probably damaging	0.99
R8147:Atr	UTSW	9	95899060	missense	probably damaging	1.00
R8204:Atr	UTSW	9	95935513	missense
R8306:Atr	UTSW	9	95920370	missense
R8462:Atr	UTSW	9	95867526	missense	probably benign
R8716:Atr	UTSW	9	95907415	missense	probably benign	0.09
R8748:Atr	UTSW	9	95932423	missense	probably benign	0.00
R8795:Atr	UTSW	9	95867531	missense	probably damaging	1.00
R8891:Atr	UTSW	9	95905760	missense	probably benign	0.03
R8976:Atr	UTSW	9	95890766	missense	probably benign	0.00
R9024:Atr	UTSW	9	95907363	missense	possibly damaging	0.93
R9116:Atr	UTSW	9	95865798	missense	probably benign	0.00
X0019:Atr	UTSW	9	95940871	missense	probably damaging	1.00
Z1088:Atr	UTSW	9	95885320	splice site	probably null
Z1177:Atr	UTSW	9	95888100	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- ATTGCAGCAACTCCATCCTGC -3'
(R):5'- TTTTGGGACTACCGTGCTCTAG -3'

Sequencing Primer
(F):5'- CACATGCTACACAAGAAAATATGTG -3'
(R):5'- CCGATTTGCCACAGTAACA -3'

Posted On

2015-07-21