Mutagenetix > Incidental Mutation

Incidental Mutation 'R0105:Cr1l'

33234

Institutional Source

Beutler Lab

Gene Symbol

Cr1l

Ensembl Gene

ENSMUSG00000016481

Gene Name

complement C3b/C4b receptor 1 like

Synonyms

Crry, mCRY

MMRRC Submission

038391-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0105 (G1)

Quality Score

205

Status

Validated (trace)

Chromosome

Chromosomal Location

194781019-194813878 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 194794720 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000142069 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075451] [ENSMUST00000191775] [ENSMUST00000193094] [ENSMUST00000194062] [ENSMUST00000194111]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000075451

SMART Domains

Protein: ENSMUSP00000074902
Gene: ENSMUSG00000016481

Domain	Start	End	E-Value	Type
low complexity region	27	39	N/A	INTRINSIC
CCP	42	98	3.51e-6	SMART
CCP	103	160	1.61e-14	SMART
CCP	165	231	7.92e-14	SMART
CCP	237	293	5.23e-14	SMART
CCP	299	355	6.69e-12	SMART
transmembrane domain	364	386	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000191775

SMART Domains

Protein: ENSMUSP00000141250
Gene: ENSMUSG00000016481

Domain	Start	End	E-Value	Type
Pfam:Sushi	1	38	9e-6	PFAM
CCP	43	100	8e-17	SMART
CCP	105	171	3.9e-16	SMART
CCP	177	233	2.6e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000193094

SMART Domains

Protein: ENSMUSP00000142309
Gene: ENSMUSG00000016481

Domain	Start	End	E-Value	Type
signal peptide	1	40	N/A	INTRINSIC
CCP	42	98	1.7e-8	SMART
CCP	103	160	8e-17	SMART
CCP	165	231	3.9e-16	SMART
CCP	237	293	2.6e-16	SMART
CCP	299	355	3.3e-14	SMART
transmembrane domain	364	386	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000194062

SMART Domains

Protein: ENSMUSP00000142104
Gene: ENSMUSG00000016481

Domain	Start	End	E-Value	Type
CCP	1	52	2.9e-9	SMART
CCP	58	114	3.3e-14	SMART
transmembrane domain	123	145	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000194111

SMART Domains

Protein: ENSMUSP00000142069
Gene: ENSMUSG00000016481

Domain	Start	End	E-Value	Type
CCP	4	60	1.7e-8	SMART
CCP	65	122	8e-17	SMART
CCP	127	193	3.9e-16	SMART
CCP	199	255	2.6e-16	SMART
CCP	261	317	3.3e-14	SMART
transmembrane domain	326	348	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000195586

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.9%

Validation Efficiency

100% (70/70)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele die by E16.5 with abnormal C3 deposition. Mice homozygous for a null allele activated in single positive thymocytes exhibit T cell lymphopenia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5530400C23Rik	G	A	6: 133,271,277 (GRCm39)	R107K	probably benign	Het
A530053G22Rik	T	C	6: 60,379,137 (GRCm39)		noncoding transcript	Het
Adcy9	A	G	16: 4,106,252 (GRCm39)	V954A	probably damaging	Het
Aldh8a1	T	A	10: 21,271,438 (GRCm39)	M388K	probably damaging	Het
Ankhd1	A	G	18: 36,779,819 (GRCm39)	I1720M	probably damaging	Het
Atp6v0a4	T	C	6: 38,030,064 (GRCm39)		probably benign	Het
C1qtnf4	T	A	2: 90,720,707 (GRCm39)	*327R	probably null	Het
C1s1	T	C	6: 124,518,277 (GRCm39)		probably benign	Het
Cdsn	A	C	17: 35,867,035 (GRCm39)	R521S	possibly damaging	Het
Cgnl1	T	C	9: 71,563,384 (GRCm39)	M848V	probably benign	Het
Cog3	A	G	14: 75,959,580 (GRCm39)	S591P	probably damaging	Het
Col6a3	A	G	1: 90,725,883 (GRCm39)	V1375A	possibly damaging	Het
Cplane1	T	A	15: 8,216,876 (GRCm39)	V698D	probably benign	Het
Crmp1	T	A	5: 37,441,479 (GRCm39)	D520E	probably damaging	Het
Ctdspl2	T	A	2: 121,807,801 (GRCm39)		probably benign	Het
Dnah6	C	T	6: 73,132,262 (GRCm39)	A1147T	probably damaging	Het
Dsg2	T	C	18: 20,735,111 (GRCm39)	S1030P	probably benign	Het
Elavl3	C	A	9: 21,948,129 (GRCm39)	V12F	possibly damaging	Het
Fam20b	T	C	1: 156,518,140 (GRCm39)	E218G	probably damaging	Het
Fam227a	T	C	15: 79,505,033 (GRCm39)	D466G	possibly damaging	Het
Fto	G	A	8: 92,249,430 (GRCm39)	E421K	probably damaging	Het
Gab2	T	C	7: 96,948,279 (GRCm39)	Y290H	probably damaging	Het
Gm973	A	G	1: 59,621,633 (GRCm39)	Q591R	probably null	Het
Gsdmc2	T	C	15: 63,700,026 (GRCm39)	T249A	probably benign	Het
Il15ra	T	A	2: 11,735,459 (GRCm39)		probably null	Het
Il1rl1	CTTGTTGTTGTTGTTGTTG	CTTGTTGTTGTTGTTGTTGTTG	1: 40,481,734 (GRCm39)		probably benign	Het
Il6ra	A	G	3: 89,784,125 (GRCm39)	I382T	probably damaging	Het
Isy1	G	A	6: 87,796,167 (GRCm39)	R257W	probably damaging	Het
Krt76	T	C	15: 101,793,347 (GRCm39)	T564A	unknown	Het
Lhpp	T	C	7: 132,232,254 (GRCm39)	S57P	probably damaging	Het
Lrrk1	G	T	7: 65,942,089 (GRCm39)	D716E	probably damaging	Het
Mcm3ap	T	A	10: 76,335,368 (GRCm39)	D1263E	probably damaging	Het
Mogat1	A	G	1: 78,500,307 (GRCm39)	T124A	probably benign	Het
Mroh7	T	C	4: 106,568,467 (GRCm39)	T48A	possibly damaging	Het
Nccrp1	T	C	7: 28,246,463 (GRCm39)	D33G	probably benign	Het
Neurog1	G	T	13: 56,399,050 (GRCm39)	D232E	probably benign	Het
Or4a71	T	C	2: 89,358,707 (GRCm39)	T16A	probably benign	Het
Or4c105	T	A	2: 88,648,253 (GRCm39)	V246D	probably damaging	Het
Otog	C	A	7: 45,937,790 (GRCm39)	T1833K	possibly damaging	Het
Perm1	C	A	4: 156,302,682 (GRCm39)	H409N	probably benign	Het
Pik3r5	A	T	11: 68,381,337 (GRCm39)	E174D	probably damaging	Het
Pkhd1	G	A	1: 20,593,956 (GRCm39)	Q1386*	probably null	Het
Pla2r1	T	C	2: 60,345,325 (GRCm39)	R344G	possibly damaging	Het
Plekha5	G	A	6: 140,537,473 (GRCm39)	R646K	possibly damaging	Het
Plekhg4	G	A	8: 106,108,644 (GRCm39)	V1202M	possibly damaging	Het
Ppil4	A	G	10: 7,674,210 (GRCm39)	Y118C	probably damaging	Het
Prrc2b	G	T	2: 32,103,323 (GRCm39)	E934*	probably null	Het
Psmb9	A	G	17: 34,406,249 (GRCm39)	F12S	probably benign	Het
Ptdss2	T	C	7: 140,732,793 (GRCm39)	W183R	probably damaging	Het
Ptpn4	C	T	1: 119,615,335 (GRCm39)		probably null	Het
Reln	G	A	5: 22,253,813 (GRCm39)	R600W	probably damaging	Het
Scml4	T	A	10: 42,806,595 (GRCm39)	V161E	probably damaging	Het
Sdcbp2	A	T	2: 151,431,478 (GRCm39)	T284S	probably benign	Het
Slc22a29	T	C	19: 8,137,991 (GRCm39)		probably benign	Het
Slc35e1	T	C	8: 73,246,415 (GRCm39)		probably benign	Het
Spen	T	C	4: 141,197,121 (GRCm39)		probably benign	Het
Sumf2	T	A	5: 129,878,735 (GRCm39)		probably benign	Het
Tbx10	A	G	19: 4,043,121 (GRCm39)		probably benign	Het
Tex10	C	A	4: 48,468,957 (GRCm39)	V73F	probably damaging	Het
Tgm5	C	A	2: 120,907,493 (GRCm39)	G77W	probably damaging	Het
Tnfrsf21	T	A	17: 43,351,082 (GRCm39)		probably null	Het
Treml2	C	T	17: 48,609,856 (GRCm39)	T96I	probably damaging	Het
Trim65	T	C	11: 116,016,892 (GRCm39)	*523W	probably null	Het
Zcchc17	T	A	4: 130,243,099 (GRCm39)	D28V	probably benign	Het
Zhx2	T	C	15: 57,686,091 (GRCm39)	F487L	probably damaging	Het
Zkscan6	T	A	11: 65,712,811 (GRCm39)	L248Q	probably damaging	Het

Other mutations in Cr1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01615:Cr1l	APN	1	194,812,189 (GRCm39)	missense	possibly damaging	0.86
IGL01988:Cr1l	APN	1	194,799,858 (GRCm39)	missense	probably damaging	1.00
IGL02412:Cr1l	APN	1	194,797,074 (GRCm39)	missense	probably damaging	1.00
IGL02412:Cr1l	APN	1	194,797,080 (GRCm39)	missense	probably damaging	0.97
IGL02707:Cr1l	APN	1	194,806,019 (GRCm39)	missense	probably benign	0.03
IGL02726:Cr1l	APN	1	194,812,188 (GRCm39)	missense	probably damaging	1.00
R0153:Cr1l	UTSW	1	194,797,164 (GRCm39)	splice site	probably benign
R0302:Cr1l	UTSW	1	194,800,101 (GRCm39)	missense	probably damaging	0.99
R1444:Cr1l	UTSW	1	194,813,510 (GRCm39)	missense	probably damaging	0.99
R1760:Cr1l	UTSW	1	194,797,123 (GRCm39)	missense	probably benign	0.01
R2402:Cr1l	UTSW	1	194,789,210 (GRCm39)	missense	probably benign	0.04
R4583:Cr1l	UTSW	1	194,812,139 (GRCm39)	missense	probably damaging	0.97
R5977:Cr1l	UTSW	1	194,797,076 (GRCm39)	nonsense	probably null
R6113:Cr1l	UTSW	1	194,813,719 (GRCm39)	unclassified	probably benign
R6324:Cr1l	UTSW	1	194,793,430 (GRCm39)	missense	probably benign	0.07
R6424:Cr1l	UTSW	1	194,800,123 (GRCm39)	missense	probably damaging	1.00
R7082:Cr1l	UTSW	1	194,806,006 (GRCm39)	missense	probably benign	0.36
R7174:Cr1l	UTSW	1	194,811,497 (GRCm39)	missense	probably benign	0.00
R7199:Cr1l	UTSW	1	194,799,878 (GRCm39)	missense	probably benign	0.20
R7979:Cr1l	UTSW	1	194,800,030 (GRCm39)	missense	probably damaging	1.00
R8104:Cr1l	UTSW	1	194,799,925 (GRCm39)	missense	possibly damaging	0.80
R8958:Cr1l	UTSW	1	194,812,243 (GRCm39)	missense	probably damaging	1.00
R9091:Cr1l	UTSW	1	194,789,204 (GRCm39)	missense	possibly damaging	0.82
R9124:Cr1l	UTSW	1	194,799,925 (GRCm39)	missense	possibly damaging	0.80
R9185:Cr1l	UTSW	1	194,797,053 (GRCm39)	missense	probably damaging	1.00
R9199:Cr1l	UTSW	1	194,786,177 (GRCm39)	missense	probably benign	0.00
R9265:Cr1l	UTSW	1	194,806,027 (GRCm39)	missense	probably benign	0.24
R9270:Cr1l	UTSW	1	194,789,204 (GRCm39)	missense	possibly damaging	0.82
R9681:Cr1l	UTSW	1	194,800,149 (GRCm39)	missense	probably damaging	0.97
X0020:Cr1l	UTSW	1	194,812,161 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GATTCACTCACATGACGGTCTTATGACTTT -3'
(R):5'- ACCCTGTTTTGGTTTTGGTGGCTTT -3'

Sequencing Primer
(F):5'- gtccatcagcccccaag -3'
(R):5'- gaacaaacaaagaaacaaagaacaag -3'

Posted On

2013-05-09