Incidental Mutation 'R4527:Usp5'
| ID |
334479 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Usp5
|
| Ensembl Gene |
ENSMUSG00000038429 |
| Gene Name |
ubiquitin specific peptidase 5 (isopeptidase T) |
| Synonyms |
Ucht |
| MMRRC Submission |
041768-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R4527 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
124815019-124829484 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to G
at 124822630 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Lysine to Asparagine
at position 318
(K318N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000041299
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047510]
[ENSMUST00000122110]
[ENSMUST00000142058]
[ENSMUST00000153306]
|
| AlphaFold |
P56399 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000047510
AA Change: K318N
PolyPhen 2
Score 0.712 (Sensitivity: 0.86; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000041299
Gene: ENSMUSG00000038429
AA Change: K318N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
11 |
N/A |
INTRINSIC |
|
Blast:ZnF_UBP
|
29 |
78 |
4e-19 |
BLAST |
|
ZnF_UBP
|
198 |
253 |
6.47e-27 |
SMART |
|
low complexity region
|
497 |
516 |
N/A |
INTRINSIC |
|
UBA
|
656 |
694 |
3.12e-7 |
SMART |
|
UBA
|
724 |
761 |
8.63e-10 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000122110
AA Change: K318N
PolyPhen 2
Score 0.258 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000114000
Gene: ENSMUSG00000038429
AA Change: K318N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
11 |
N/A |
INTRINSIC |
|
Blast:ZnF_UBP
|
29 |
78 |
4e-19 |
BLAST |
|
ZnF_UBP
|
198 |
253 |
6.47e-27 |
SMART |
|
low complexity region
|
497 |
516 |
N/A |
INTRINSIC |
|
UBA
|
633 |
671 |
3.12e-7 |
SMART |
|
UBA
|
701 |
738 |
8.63e-10 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000129159
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131805
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000141042
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000142058
AA Change: K300N
PolyPhen 2
Score 0.529 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000117439
Gene: ENSMUSG00000038429
AA Change: K300N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
11 |
N/A |
INTRINSIC |
|
Blast:ZnF_UBP
|
29 |
78 |
4e-20 |
BLAST |
|
ZnF_UBP
|
180 |
235 |
6.47e-27 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146098
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000153306
|
| SMART Domains |
Protein: ENSMUSP00000118200
Gene: ENSMUSG00000038429
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:ZnF_UBP
|
1 |
32 |
3e-7 |
BLAST |
|
ZnF_UBP
|
152 |
207 |
6.47e-27 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154189
|
| Meta Mutation Damage Score |
0.0822 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.1%
- 20x: 94.9%
|
| Validation Efficiency |
100% (40/40) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Ubiquitin (see MIM 191339)-dependent proteolysis is a complex pathway of protein metabolism implicated in such diverse cellular functions as maintenance of chromatin structure, receptor function, and degradation of abnormal proteins. A late step of the process involves disassembly of the polyubiquitin chains on degraded proteins into ubiquitin monomers. USP5 disassembles branched polyubiquitin chains by a sequential exo mechanism, starting at the proximal end of the chain (Wilkinson et al., 1995 [PubMed 7578059]).[supplied by OMIM, Mar 2010]
PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 32 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Agfg2 |
A |
G |
5: 137,684,536 |
V15A |
unknown |
Het |
| Asb3 |
A |
G |
11: 31,058,933 |
D278G |
probably benign |
Het |
| Atrn |
T |
C |
2: 130,973,504 |
I780T |
probably benign |
Het |
| Car2 |
C |
T |
3: 14,898,005 |
P200L |
probably damaging |
Het |
| Cars |
A |
T |
7: 143,565,049 |
M668K |
probably benign |
Het |
| Cd109 |
CATTTATTTATTTATTTATTTATTTATTTATTTAT |
CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT |
9: 78,712,500 |
|
probably benign |
Het |
| Cer1 |
A |
G |
4: 82,884,669 |
F139L |
possibly damaging |
Het |
| Crhr2 |
T |
A |
6: 55,132,853 |
|
probably benign |
Het |
| Dnah7c |
G |
A |
1: 46,532,931 |
E855K |
probably benign |
Het |
| Espn |
C |
T |
4: 152,135,649 |
R339Q |
probably damaging |
Het |
| Flt3 |
T |
A |
5: 147,356,353 |
E481V |
probably benign |
Het |
| Gorab |
T |
G |
1: 163,397,136 |
K32T |
possibly damaging |
Het |
| Mak16 |
G |
A |
8: 31,166,177 |
Q93* |
probably null |
Het |
| Muc4 |
T |
C |
16: 32,755,843 |
|
probably benign |
Het |
| Neb |
A |
T |
2: 52,193,237 |
I5409N |
probably benign |
Het |
| Olfm4 |
C |
T |
14: 80,021,224 |
S304F |
probably benign |
Het |
| Pask |
A |
G |
1: 93,320,502 |
F1026L |
probably benign |
Het |
| Rab11a |
A |
G |
9: 64,725,568 |
S19P |
probably benign |
Het |
| Rab11fip3 |
T |
C |
17: 26,036,657 |
D541G |
probably damaging |
Het |
| Rnf10 |
T |
C |
5: 115,260,151 |
S108G |
probably damaging |
Het |
| Rps4l-ps |
C |
T |
7: 114,927,168 |
|
noncoding transcript |
Het |
| Shank1 |
A |
T |
7: 44,354,590 |
H1902L |
possibly damaging |
Het |
| Slc8a3 |
T |
C |
12: 81,315,853 |
Y64C |
probably damaging |
Het |
| Sorbs3 |
A |
C |
14: 70,207,617 |
I4S |
probably damaging |
Het |
| St18 |
A |
G |
1: 6,855,423 |
N935S |
probably damaging |
Het |
| Taf4b |
T |
C |
18: 14,821,442 |
V525A |
probably damaging |
Het |
| Timm10b |
A |
G |
7: 105,682,806 |
N828S |
probably benign |
Het |
| Ttyh1 |
A |
T |
7: 4,119,764 |
D4V |
probably damaging |
Het |
| Usp34 |
T |
A |
11: 23,421,257 |
L53Q |
possibly damaging |
Het |
| Vmn2r70 |
A |
T |
7: 85,559,579 |
N563K |
probably damaging |
Het |
| Xrcc5 |
C |
A |
1: 72,312,500 |
N76K |
probably damaging |
Het |
| Zscan25 |
T |
C |
5: 145,283,458 |
V21A |
probably damaging |
Het |
|
| Other mutations in Usp5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00481:Usp5
|
APN |
6 |
124829353 |
missense |
probably benign |
0.00 |
|
IGL00905:Usp5
|
APN |
6 |
124815613 |
missense |
probably damaging |
1.00 |
|
IGL01584:Usp5
|
APN |
6 |
124819387 |
missense |
probably damaging |
1.00 |
|
IGL01642:Usp5
|
APN |
6 |
124820453 |
missense |
probably damaging |
0.99 |
|
IGL01787:Usp5
|
APN |
6 |
124824226 |
missense |
possibly damaging |
0.95 |
|
IGL02394:Usp5
|
APN |
6 |
124822709 |
missense |
probably damaging |
1.00 |
|
IGL02677:Usp5
|
APN |
6 |
124819426 |
missense |
probably damaging |
1.00 |
|
IGL03392:Usp5
|
APN |
6 |
124826387 |
missense |
probably damaging |
1.00 |
|
BB004:Usp5
|
UTSW |
6 |
124824229 |
missense |
probably benign |
0.06 |
|
BB014:Usp5
|
UTSW |
6 |
124824229 |
missense |
probably benign |
0.06 |
|
R0594:Usp5
|
UTSW |
6 |
124817424 |
missense |
probably damaging |
0.99 |
|
R1522:Usp5
|
UTSW |
6 |
124825166 |
missense |
probably benign |
|
|
R1719:Usp5
|
UTSW |
6 |
124823460 |
missense |
possibly damaging |
0.94 |
|
R2185:Usp5
|
UTSW |
6 |
124817410 |
missense |
probably damaging |
0.99 |
|
R3115:Usp5
|
UTSW |
6 |
124815597 |
missense |
probably damaging |
1.00 |
|
R4196:Usp5
|
UTSW |
6 |
124824938 |
missense |
possibly damaging |
0.78 |
|
R4347:Usp5
|
UTSW |
6 |
124821195 |
missense |
probably damaging |
1.00 |
|
R4386:Usp5
|
UTSW |
6 |
124818474 |
critical splice donor site |
probably null |
|
|
R4500:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4501:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4526:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4528:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4684:Usp5
|
UTSW |
6 |
124817956 |
missense |
probably damaging |
1.00 |
|
R4912:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4913:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4954:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4956:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4957:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R4958:Usp5
|
UTSW |
6 |
124822630 |
missense |
possibly damaging |
0.71 |
|
R5071:Usp5
|
UTSW |
6 |
124826379 |
missense |
probably benign |
0.13 |
|
R6020:Usp5
|
UTSW |
6 |
124817613 |
unclassified |
probably benign |
|
|
R6236:Usp5
|
UTSW |
6 |
124818478 |
missense |
probably benign |
0.05 |
|
R6370:Usp5
|
UTSW |
6 |
124820428 |
missense |
probably benign |
0.01 |
|
R7090:Usp5
|
UTSW |
6 |
124829394 |
start codon destroyed |
probably null |
|
|
R7317:Usp5
|
UTSW |
6 |
124826318 |
missense |
probably damaging |
0.98 |
|
R7447:Usp5
|
UTSW |
6 |
124821114 |
missense |
probably damaging |
1.00 |
|
R7572:Usp5
|
UTSW |
6 |
124818007 |
missense |
probably damaging |
0.99 |
|
R7598:Usp5
|
UTSW |
6 |
124826379 |
missense |
possibly damaging |
0.73 |
|
R7927:Usp5
|
UTSW |
6 |
124824229 |
missense |
probably benign |
0.06 |
|
R7931:Usp5
|
UTSW |
6 |
124824446 |
intron |
probably benign |
|
|
R8089:Usp5
|
UTSW |
6 |
124820410 |
critical splice donor site |
probably null |
|
|
R8361:Usp5
|
UTSW |
6 |
124824985 |
missense |
probably damaging |
1.00 |
|
R8544:Usp5
|
UTSW |
6 |
124823517 |
missense |
probably damaging |
1.00 |
|
R8679:Usp5
|
UTSW |
6 |
124817431 |
missense |
possibly damaging |
0.94 |
|
R9115:Usp5
|
UTSW |
6 |
124826421 |
missense |
probably damaging |
0.97 |
|
R9128:Usp5
|
UTSW |
6 |
124823451 |
critical splice donor site |
probably null |
|
|
R9227:Usp5
|
UTSW |
6 |
124818636 |
missense |
probably damaging |
1.00 |
|
R9651:Usp5
|
UTSW |
6 |
124822538 |
missense |
possibly damaging |
0.91 |
|
X0058:Usp5
|
UTSW |
6 |
124824176 |
missense |
probably damaging |
1.00 |
|
Z1177:Usp5
|
UTSW |
6 |
124825148 |
missense |
probably damaging |
0.97 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGCCCTCCTTAAGTAATGC -3'
(R):5'- TCGAGGATGAGTCTTAGTCCAG -3'
Sequencing Primer
(F):5'- GGCCCTCCTTAAGTAATGCTAAAATG -3'
(R):5'- TCTTAGTCCAGAGCTTAGAGACG -3'
|
| Posted On |
2015-08-18 |
Incidental Mutation