Mutagenetix > Incidental Mutation

Incidental Mutation 'R0220:Ubxn4'

33758

Institutional Source

Beutler Lab

Gene Symbol

Ubxn4

Ensembl Gene

ENSMUSG00000026353

Gene Name

UBX domain protein 4

Synonyms

Ubxd2, 1300013G12Rik

MMRRC Submission

038469-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.512) question?

Stock #

R0220 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

128171701-128207115 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 128183931 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 97 (V97D)

Ref Sequence

ENSEMBL: ENSMUSP00000027592 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027592] [ENSMUST00000190736]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000027592
AA Change: V97D

PolyPhen 2 Score 0.860 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000027592
Gene: ENSMUSG00000026353
AA Change: V97D

Domain	Start	End	E-Value	Type
coiled coil region	191	290	N/A	INTRINSIC
UBX	309	393	5.63e-32	SMART
low complexity region	444	460	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187031

Predicted Effect

probably benign
Transcript: ENSMUST00000190736

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 96.9%
20x: 94.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] UBXD2 is an integral membrane protein of the endoplasmic reticulum (ER) that binds valosin-containing protein (VCP; MIM 601023) and promotes ER-associated protein degradation (ERAD) (Liang et al., 2006 [PubMed 16968747]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	T	C	12: 71,195,194 (GRCm39)		probably null	Het
Abcc5	A	G	16: 20,187,852 (GRCm39)	V863A	probably benign	Het
Anxa6	A	C	11: 54,872,588 (GRCm39)		probably null	Het
Armc10	A	G	5: 21,866,582 (GRCm39)	K296R	probably benign	Het
Arpc2	T	A	1: 74,287,293 (GRCm39)	F38I	probably damaging	Het
Ass1	A	T	2: 31,404,831 (GRCm39)	N371Y	probably damaging	Het
Bcl6	T	A	16: 23,784,969 (GRCm39)	H677L	possibly damaging	Het
Bcl7a	G	A	5: 123,489,982 (GRCm39)	V49I	probably damaging	Het
Ccnj	T	C	19: 40,833,254 (GRCm39)	L144P	probably damaging	Het
Cdh8	G	T	8: 99,838,311 (GRCm39)	P510T	probably benign	Het
Cgnl1	C	A	9: 71,632,225 (GRCm39)	K375N	possibly damaging	Het
Cubn	C	A	2: 13,361,520 (GRCm39)	R1695L	probably damaging	Het
Cyp3a59	G	A	5: 146,035,080 (GRCm39)	V253I	probably benign	Het
Cyp4f13	A	G	17: 33,148,476 (GRCm39)	I208T	probably damaging	Het
Dennd4a	A	C	9: 64,759,727 (GRCm39)	E277D	probably damaging	Het
Depdc1a	G	A	3: 159,229,542 (GRCm39)	V625I	probably benign	Het
Dot1l	A	T	10: 80,621,692 (GRCm39)	D448V	probably damaging	Het
Efhc1	A	G	1: 21,037,582 (GRCm39)	D253G	probably damaging	Het
Eme1	T	A	11: 94,541,084 (GRCm39)	E246V	probably null	Het
Foxred1	A	G	9: 35,120,749 (GRCm39)	L128P	probably damaging	Het
Gm4787	G	T	12: 81,425,422 (GRCm39)	S245R	probably damaging	Het
Gm5141	T	A	13: 62,922,271 (GRCm39)	K299N	probably damaging	Het
Greb1	C	A	12: 16,732,287 (GRCm39)	R1558L	probably damaging	Het
Ip6k3	A	T	17: 27,364,203 (GRCm39)	F282I	probably damaging	Het
Kdm2a	T	C	19: 4,374,947 (GRCm39)	D288G	possibly damaging	Het
Kdm4d	A	T	9: 14,374,418 (GRCm39)	V480E	probably benign	Het
Kif26a	A	T	12: 112,123,824 (GRCm39)	Q143L	probably damaging	Het
Klhl41	G	A	2: 69,500,829 (GRCm39)	D97N	probably benign	Het
Krt34	C	T	11: 99,929,519 (GRCm39)		probably benign	Het
Lcn11	A	T	2: 25,667,843 (GRCm39)	H77L	probably benign	Het
Megf6	G	A	4: 154,342,672 (GRCm39)	R529H	probably damaging	Het
Mipol1	A	G	12: 57,503,936 (GRCm39)	E368G	probably damaging	Het
Mtus1	A	T	8: 41,447,609 (GRCm39)	M442K	probably damaging	Het
Naca	T	C	10: 127,879,255 (GRCm39)		probably benign	Het
Nbea	G	A	3: 55,912,724 (GRCm39)	T1021I	probably benign	Het
Nfib	A	T	4: 82,215,013 (GRCm39)	V530E	probably damaging	Het
Nptx1	A	G	11: 119,435,467 (GRCm39)	V283A	probably damaging	Het
Opn5	A	G	17: 42,907,495 (GRCm39)	V127A	probably benign	Het
Or4c126	G	T	2: 89,824,206 (GRCm39)	L156F	probably benign	Het
Or5h22	A	T	16: 58,895,095 (GRCm39)	M116K	probably damaging	Het
Pcgf6	A	G	19: 47,028,529 (GRCm39)	V291A	probably benign	Het
Pilrb2	C	A	5: 137,869,459 (GRCm39)	R47L	probably benign	Het
Prom2	A	C	2: 127,383,027 (GRCm39)	S72A	probably benign	Het
Sema3e	T	C	5: 14,214,167 (GRCm39)	F144S	possibly damaging	Het
Sephs1	A	G	2: 4,904,371 (GRCm39)	T250A	probably benign	Het
Smarcc2	A	T	10: 128,319,505 (GRCm39)	D798V	probably benign	Het
Taf5	T	C	19: 47,068,999 (GRCm39)	S563P	probably damaging	Het
Topaz1	A	G	9: 122,578,368 (GRCm39)	H426R	possibly damaging	Het
Tpgs1	T	A	10: 79,511,271 (GRCm39)	C138S	possibly damaging	Het
Traf1	A	T	2: 34,839,115 (GRCm39)	V70D	probably benign	Het
Ttn	T	C	2: 76,641,737 (GRCm39)	Y13453C	probably damaging	Het
Ugt1a8	A	T	1: 88,016,057 (GRCm39)	I157L	probably benign	Het
Vmn2r13	A	T	5: 109,304,332 (GRCm39)	C700S	probably damaging	Het
Wee1	A	T	7: 109,723,733 (GRCm39)	D216V	probably benign	Het
Zc3h4	T	C	7: 16,163,198 (GRCm39)	Y533H	unknown	Het
Zfp1005	A	T	2: 150,110,595 (GRCm39)	Q428H	unknown	Het
Zfp81	A	G	17: 33,555,698 (GRCm39)	I43T	possibly damaging	Het
Zfp963	A	T	8: 70,196,145 (GRCm39)	Y103N	probably benign	Het
Zfp963	A	T	8: 70,196,143 (GRCm39)	Y103*	probably null	Het
Zzef1	G	T	11: 72,756,792 (GRCm39)	D1126Y	probably damaging	Het

Other mutations in Ubxn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00545:Ubxn4	APN	1	128,187,202 (GRCm39)	missense	possibly damaging	0.90
IGL02302:Ubxn4	APN	1	128,183,848 (GRCm39)	intron	probably benign
IGL03066:Ubxn4	APN	1	128,188,591 (GRCm39)	splice site	probably null
E0370:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
P4748:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0008:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0086:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0087:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0244:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0464:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0465:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0466:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0467:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R0658:Ubxn4	UTSW	1	128,190,641 (GRCm39)	missense	probably benign	0.23
R1430:Ubxn4	UTSW	1	128,202,617 (GRCm39)	missense	probably benign	0.03
R1623:Ubxn4	UTSW	1	128,200,588 (GRCm39)	missense	possibly damaging	0.62
R1700:Ubxn4	UTSW	1	128,180,023 (GRCm39)	missense	possibly damaging	0.89
R1764:Ubxn4	UTSW	1	128,183,916 (GRCm39)	missense	probably damaging	1.00
R2128:Ubxn4	UTSW	1	128,172,247 (GRCm39)	missense	probably benign
R2472:Ubxn4	UTSW	1	128,200,606 (GRCm39)	missense	probably damaging	1.00
R4610:Ubxn4	UTSW	1	128,183,186 (GRCm39)	missense	probably benign	0.03
R4651:Ubxn4	UTSW	1	128,202,587 (GRCm39)	missense	probably benign	0.32
R4652:Ubxn4	UTSW	1	128,202,587 (GRCm39)	missense	probably benign	0.32
R4804:Ubxn4	UTSW	1	128,194,141 (GRCm39)	nonsense	probably null
R5735:Ubxn4	UTSW	1	128,186,677 (GRCm39)	missense	possibly damaging	0.83
R5826:Ubxn4	UTSW	1	128,194,058 (GRCm39)	missense	possibly damaging	0.80
R5840:Ubxn4	UTSW	1	128,187,262 (GRCm39)	missense	possibly damaging	0.92
R5883:Ubxn4	UTSW	1	128,183,867 (GRCm39)	missense	probably damaging	1.00
R6637:Ubxn4	UTSW	1	128,204,824 (GRCm39)	missense	probably damaging	1.00
R6827:Ubxn4	UTSW	1	128,204,714 (GRCm39)	missense	probably benign
R7092:Ubxn4	UTSW	1	128,179,959 (GRCm39)	missense	probably benign	0.29
R7449:Ubxn4	UTSW	1	128,172,280 (GRCm39)	missense	possibly damaging	0.88
R8049:Ubxn4	UTSW	1	128,183,933 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CCACTTGCACTAGAGGCATGATATGG -3'
(R):5'- GCTTGTGGAGTAGATGAAACAGATGGTC -3'

Sequencing Primer
(F):5'- ACTAGAGGCATGATATGGTCGTTG -3'
(R):5'- aattctttcctttctttcctctctg -3'

Posted On

2013-05-09