Mutagenetix > Incidental Mutation

Incidental Mutation 'R4572:Cilp2'

342197

Institutional Source

Beutler Lab

Gene Symbol

Cilp2

Ensembl Gene

ENSMUSG00000044006

Gene Name

cartilage intermediate layer protein 2

Synonyms

1110031K21Rik, CLIP-2

MMRRC Submission

041796-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4572 (G1)

Quality Score

111

Status

Validated

Chromosome

Chromosomal Location

69880369-69887687 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 69882410 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 646 (V646A)

Ref Sequence

ENSEMBL: ENSMUSP00000061544 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057831]

AlphaFold

D3Z7H8

Predicted Effect

probably damaging
Transcript: ENSMUST00000057831
AA Change: V646A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000061544
Gene: ENSMUSG00000044006
AA Change: V646A

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
Pfam:Mucin2_WxxW	58	143	2.5e-22	PFAM
TSP1	149	197	1.33e-9	SMART
Pfam:CarboxypepD_reg	210	288	4.5e-10	PFAM
IGc2	305	367	2.52e-9	SMART
low complexity region	472	481	N/A	INTRINSIC
low complexity region	614	632	N/A	INTRINSIC
low complexity region	693	703	N/A	INTRINSIC
low complexity region	705	719	N/A	INTRINSIC
low complexity region	817	827	N/A	INTRINSIC
low complexity region	1041	1061	N/A	INTRINSIC

Meta Mutation Damage Score

0.5702

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	A	T	11: 110,216,548 (GRCm38)	I747N	probably benign	Het
Adamtsl2	A	G	2: 27,083,256 (GRCm38)	Y97C	probably damaging	Het
Alox12e	A	G	11: 70,321,181 (GRCm38)		probably benign	Het
Alpk2	A	T	18: 65,281,004 (GRCm38)	S2014T	probably damaging	Het
Ankrd36	A	T	11: 5,689,340 (GRCm38)		probably null	Het
Apobec1	T	C	6: 122,581,397 (GRCm38)	D133G	probably damaging	Het
Arfgef1	A	T	1: 10,213,141 (GRCm38)	I181N	probably damaging	Het
Clasrp	A	G	7: 19,584,464 (GRCm38)		probably null	Het
Cnot2	T	C	10: 116,494,846 (GRCm38)	T423A	probably benign	Het
Crtap	T	C	9: 114,384,806 (GRCm38)	D227G	probably benign	Het
Cyp17a1	A	G	19: 46,670,551 (GRCm38)	F217S	probably damaging	Het
Ddx60	A	G	8: 61,987,421 (GRCm38)	M1036V	probably damaging	Het
Dnah11	A	T	12: 118,010,125 (GRCm38)	I2818N	probably benign	Het
Dok6	T	A	18: 89,473,947 (GRCm38)	I169F	possibly damaging	Het
Duox2	T	A	2: 122,281,726 (GRCm38)	R1326S	probably benign	Het
Epha10	A	G	4: 124,902,568 (GRCm38)	T357A	unknown	Het
Ephb2	A	C	4: 136,655,940 (GRCm38)	F942C	probably damaging	Het
Fscn3	T	A	6: 28,430,635 (GRCm38)		probably null	Het
Gabrb2	A	G	11: 42,593,917 (GRCm38)	N267S	possibly damaging	Het
Gabrr3	A	T	16: 59,461,638 (GRCm38)	Y452F	probably benign	Het
Gen1	A	G	12: 11,242,418 (GRCm38)	S457P	probably damaging	Het
Gm1993	C	T	X: 25,560,356 (GRCm38)	R77H	probably damaging	Het
Gm5592	G	A	7: 41,216,159 (GRCm38)		probably benign	Het
Hmbox1	A	G	14: 64,903,233 (GRCm38)		probably null	Het
Hus1	A	T	11: 9,007,617 (GRCm38)		probably null	Het
Ino80	G	A	2: 119,402,358 (GRCm38)	R1160W	probably damaging	Het
Kalrn	A	T	16: 34,392,042 (GRCm38)	F27L	probably damaging	Het
Kri1	A	T	9: 21,280,384 (GRCm38)	F187L	probably damaging	Het
Lekr1	A	T	3: 65,783,915 (GRCm38)		noncoding transcript	Het
Mapk15	T	C	15: 75,998,750 (GRCm38)		probably benign	Het
Mrgpre	G	A	7: 143,781,104 (GRCm38)	L221F	probably damaging	Het
Mrpl50	A	T	4: 49,514,399 (GRCm38)	S91T	possibly damaging	Het
Muc4	T	C	16: 32,753,802 (GRCm38)	I1226T	probably benign	Het
Mup15	A	G	4: 61,438,217 (GRCm38)		probably null	Het
Ncapd3	A	G	9: 27,094,615 (GRCm38)	D1469G	probably damaging	Het
Nlrp9b	G	A	7: 20,026,681 (GRCm38)		probably null	Het
Npy6r	A	T	18: 44,275,917 (GRCm38)	Y135F	probably benign	Het
Or7e170	A	C	9: 19,883,979 (GRCm38)	C109G	probably benign	Het
Phf14	G	A	6: 12,006,824 (GRCm38)	R825Q	probably damaging	Het
Pigg	A	G	5: 108,332,885 (GRCm38)	M379V	probably benign	Het
Plppr3	T	A	10: 79,866,063 (GRCm38)	Q315L	probably benign	Het
Plxnd1	C	A	6: 115,955,756 (GRCm38)	C1921F	probably damaging	Het
Ptger4	A	C	15: 5,243,133 (GRCm38)	S2A	probably benign	Het
Qrfprl	A	T	6: 65,454,991 (GRCm38)	M293L	probably benign	Het
Rab4a	A	T	8: 123,834,060 (GRCm38)	D196V	probably benign	Het
Rbck1	G	A	2: 152,318,733 (GRCm38)	Q428*	probably null	Het
Rgs14	A	T	13: 55,380,062 (GRCm38)	N266I	probably damaging	Het
Serpina1c	A	T	12: 103,898,708 (GRCm38)		probably benign	Het
Sesn3	G	A	9: 14,321,220 (GRCm38)	R263H	probably benign	Het
Slfn1	A	T	11: 83,121,463 (GRCm38)	D135V	probably benign	Het
Spata17	T	C	1: 187,193,996 (GRCm38)	K46E	possibly damaging	Het
Srcin1	A	C	11: 97,534,934 (GRCm38)	D432E	probably damaging	Het
Stxbp5	T	C	10: 9,838,144 (GRCm38)	E217G	probably damaging	Het
Terf2ip	A	G	8: 112,012,017 (GRCm38)	D179G	probably damaging	Het
Tll1	A	G	8: 64,056,309 (GRCm38)	F556L	possibly damaging	Het
Tmed4	CTCTTTCT	CTCT	11: 6,274,461 (GRCm38)		probably null	Het
Trappc9	G	T	15: 72,937,067 (GRCm38)	Q537K	possibly damaging	Het
Trim30a	G	T	7: 104,411,188 (GRCm38)	C460*	probably null	Het
Trim35	T	C	14: 66,307,873 (GRCm38)	Y298H	probably damaging	Het
Ugt3a1	T	A	15: 9,306,393 (GRCm38)	H209Q	probably benign	Het
Ulk4	T	C	9: 121,192,764 (GRCm38)	K627R	probably damaging	Het
Wnk1	T	C	6: 119,951,911 (GRCm38)	T1319A	possibly damaging	Het
Wnt9b	G	A	11: 103,732,155 (GRCm38)	R141C	probably damaging	Het
Zfp735	A	G	11: 73,689,785 (GRCm38)	M37V	probably benign	Het
Zmym1	A	T	4: 127,050,835 (GRCm38)	N186K	probably benign	Het

Other mutations in Cilp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01483:Cilp2	APN	8	69,882,846 (GRCm38)	missense	probably damaging	0.96
IGL01538:Cilp2	APN	8	69,881,204 (GRCm38)	missense	probably benign	0.13
IGL02063:Cilp2	APN	8	69,882,865 (GRCm38)	missense	probably damaging	1.00
IGL02582:Cilp2	APN	8	69,881,286 (GRCm38)	missense	probably damaging	1.00
IGL02892:Cilp2	APN	8	69,884,320 (GRCm38)	missense	probably benign	0.02
R0308:Cilp2	UTSW	8	69,882,993 (GRCm38)	missense	probably benign	0.00
R0371:Cilp2	UTSW	8	69,881,606 (GRCm38)	missense	probably damaging	1.00
R0413:Cilp2	UTSW	8	69,882,993 (GRCm38)	missense	probably benign	0.00
R0414:Cilp2	UTSW	8	69,882,993 (GRCm38)	missense	probably benign	0.00
R0470:Cilp2	UTSW	8	69,885,405 (GRCm38)	missense	possibly damaging	0.87
R0838:Cilp2	UTSW	8	69,881,719 (GRCm38)	missense	probably benign	0.04
R0842:Cilp2	UTSW	8	69,883,118 (GRCm38)	missense	probably damaging	1.00
R1807:Cilp2	UTSW	8	69,882,194 (GRCm38)	missense	probably damaging	1.00
R1864:Cilp2	UTSW	8	69,881,323 (GRCm38)	missense	probably damaging	1.00
R2010:Cilp2	UTSW	8	69,881,694 (GRCm38)	missense	probably damaging	1.00
R2104:Cilp2	UTSW	8	69,882,792 (GRCm38)	nonsense	probably null
R2339:Cilp2	UTSW	8	69,882,894 (GRCm38)	missense	probably benign	0.04
R5225:Cilp2	UTSW	8	69,883,365 (GRCm38)	missense	probably damaging	1.00
R5923:Cilp2	UTSW	8	69,882,875 (GRCm38)	missense	probably damaging	1.00
R6113:Cilp2	UTSW	8	69,882,359 (GRCm38)	missense	probably benign	0.00
R6958:Cilp2	UTSW	8	69,882,540 (GRCm38)	missense	probably benign	0.01
R7108:Cilp2	UTSW	8	69,881,129 (GRCm38)	missense	probably damaging	1.00
R7454:Cilp2	UTSW	8	69,883,390 (GRCm38)	missense	probably damaging	1.00
R7455:Cilp2	UTSW	8	69,881,071 (GRCm38)	missense	probably damaging	1.00
R7598:Cilp2	UTSW	8	69,886,032 (GRCm38)	missense	probably benign	0.29
R7736:Cilp2	UTSW	8	69,881,421 (GRCm38)	missense	probably damaging	1.00
R7781:Cilp2	UTSW	8	69,882,347 (GRCm38)	missense	possibly damaging	0.81
R8924:Cilp2	UTSW	8	69,886,458 (GRCm38)	missense	probably damaging	0.99
R9444:Cilp2	UTSW	8	69,882,896 (GRCm38)	missense	probably damaging	1.00
Z1088:Cilp2	UTSW	8	69,885,410 (GRCm38)	missense	possibly damaging	0.94
Z1177:Cilp2	UTSW	8	69,884,546 (GRCm38)	nonsense	probably null
Z1177:Cilp2	UTSW	8	69,884,542 (GRCm38)	missense	probably damaging	1.00
Z1177:Cilp2	UTSW	8	69,882,808 (GRCm38)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGGTTAAACAAGCGGCGCTC -3'
(R):5'- GAGACTTCGTAGACAGCGTC -3'

Sequencing Primer
(F):5'- AGAAACGCGCGCTCCTC -3'
(R):5'- TGTGTACCACGAGATCCGC -3'

Posted On

2015-09-24