Mutagenetix > Incidental Mutation

Incidental Mutation 'R4589:Tdh'

342699

Institutional Source

Beutler Lab

Gene Symbol

Tdh

Ensembl Gene

ENSMUSG00000021953

Gene Name

L-threonine dehydrogenase

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.162) question?

Stock #

R4589 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

63729796-63746541 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 63733326 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 140 (L140Q)

Ref Sequence

ENSEMBL: ENSMUSP00000132119 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022522] [ENSMUST00000165776] [ENSMUST00000168488] [ENSMUST00000168669]

AlphaFold

Q8K3F7

Predicted Effect

probably damaging
Transcript: ENSMUST00000022522
AA Change: L155Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000022522
Gene: ENSMUSG00000021953
AA Change: L155Q

Domain	Start	End	E-Value	Type
Pfam:RmlD_sub_bind	56	252	3.3e-10	PFAM
Pfam:Epimerase	58	294	5.8e-22	PFAM
Pfam:3Beta_HSD	59	185	7e-9	PFAM
Pfam:GDP_Man_Dehyd	59	359	1.4e-15	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000164515

Predicted Effect

probably damaging
Transcript: ENSMUST00000165776
AA Change: L90Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000129206
Gene: ENSMUSG00000021953
AA Change: L90Q

Domain	Start	End	E-Value	Type
SCOP:d1kc0a_	42	149	3e-11	SMART
PDB:3A4V\|B	43	144	3e-18	PDB

Predicted Effect

probably damaging
Transcript: ENSMUST00000168488
AA Change: L90Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000131068
Gene: ENSMUSG00000021953
AA Change: L90Q

Domain	Start	End	E-Value	Type
SCOP:d1kc0a_	42	140	5e-11	SMART
PDB:3A4V\|B	43	148	1e-18	PDB

Predicted Effect

probably damaging
Transcript: ENSMUST00000168669
AA Change: L140Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132119
Gene: ENSMUSG00000021953
AA Change: L140Q

Domain	Start	End	E-Value	Type
Pfam:RmlD_sub_bind	41	205	6.9e-10	PFAM
Pfam:Polysacc_synt_2	43	164	2.2e-6	PFAM
Pfam:Epimerase	43	200	9.2e-13	PFAM
Pfam:3Beta_HSD	44	168	5.1e-9	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000170772

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc1	G	T	16: 14,211,895 (GRCm39)	V157L	probably benign	Het
Actn1	G	A	12: 80,218,573 (GRCm39)	T737I	possibly damaging	Het
Ada	T	C	2: 163,574,868 (GRCm39)	K90E	possibly damaging	Het
Ap2b1	T	A	11: 83,223,837 (GRCm39)	L184*	probably null	Het
Arfgef3	T	C	10: 18,521,947 (GRCm39)	D693G	probably damaging	Het
Arid4a	A	T	12: 71,116,738 (GRCm39)	I277F	probably damaging	Het
Armh4	A	G	14: 50,011,039 (GRCm39)	S223P	probably damaging	Het
Ccdc171	A	G	4: 83,467,855 (GRCm39)	S67G	probably benign	Het
Ccr5	T	A	9: 123,924,539 (GRCm39)	F47L	probably benign	Het
Clip4	T	A	17: 72,117,862 (GRCm39)	C302*	probably null	Het
Cyth1	C	T	11: 118,075,811 (GRCm39)	V142I	possibly damaging	Het
Ddx59	T	A	1: 136,367,480 (GRCm39)		probably null	Het
Def6	G	T	17: 28,447,121 (GRCm39)	R584L	probably benign	Het
Dnah7c	C	A	1: 46,553,743 (GRCm39)	Y340*	probably null	Het
Eif2ak4	T	G	2: 118,247,819 (GRCm39)	C173W	probably damaging	Het
Gm14403	C	T	2: 177,200,428 (GRCm39)	H125Y	probably benign	Het
Grk3	T	C	5: 113,089,584 (GRCm39)	I323V	possibly damaging	Het
Homez	G	T	14: 55,094,487 (GRCm39)	T407K	probably damaging	Het
Igdcc4	A	G	9: 65,037,910 (GRCm39)	T763A	probably damaging	Het
Ighg2b	A	T	12: 113,270,104 (GRCm39)	W305R	unknown	Het
Il27ra	G	T	8: 84,763,038 (GRCm39)	N296K	probably damaging	Het
Lzic	G	T	4: 149,572,561 (GRCm39)	L50F	probably damaging	Het
Mbtd1	T	C	11: 93,812,245 (GRCm39)	V183A	probably damaging	Het
Mme	T	A	3: 63,287,693 (GRCm39)	D731E	probably benign	Het
Mocos	T	C	18: 24,787,095 (GRCm39)	L38P	probably damaging	Het
Mrps18a	T	C	17: 46,428,899 (GRCm39)		probably null	Het
Msh2	T	A	17: 87,987,460 (GRCm39)	V200D	possibly damaging	Het
Mug1	A	T	6: 121,834,310 (GRCm39)	I364F	probably benign	Het
Mycbp2	G	T	14: 103,414,749 (GRCm39)	S2554R	probably benign	Het
Nat10	A	G	2: 103,584,415 (GRCm39)	C121R	probably damaging	Het
Nfatc3	T	A	8: 106,805,705 (GRCm39)	D183E	probably damaging	Het
Odr4	C	T	1: 150,260,238 (GRCm39)	V127I	probably benign	Het
Or4d10c	T	C	19: 12,065,305 (GRCm39)	I284V	possibly damaging	Het
Or51ac3	A	T	7: 103,213,639 (GRCm39)	F282L	probably damaging	Het
Or52h1	C	A	7: 103,828,636 (GRCm39)		probably null	Het
Or5d14	T	C	2: 87,880,823 (GRCm39)	I48M	probably benign	Het
Pak6	T	A	2: 118,527,021 (GRCm39)	I672K	probably damaging	Het
Pan3	A	T	5: 147,479,983 (GRCm39)	I830F	probably damaging	Het
Pcdh9	A	T	14: 94,125,628 (GRCm39)	L181I	probably damaging	Het
Pigg	G	A	5: 108,480,556 (GRCm39)	A447T	probably benign	Het
Pitpnb	T	A	5: 111,519,214 (GRCm39)	S165T	probably damaging	Het
Pla2g2a	A	G	4: 138,560,590 (GRCm39)	Y67C	probably damaging	Het
Plch1	A	G	3: 63,688,928 (GRCm39)	I80T	probably damaging	Het
Pnma1	A	G	12: 84,194,235 (GRCm39)	I156T	probably benign	Het
Prss21	G	T	17: 24,091,796 (GRCm39)	D255Y	possibly damaging	Het
Prune1	T	A	3: 95,169,642 (GRCm39)	I187F	possibly damaging	Het
Rab7b	T	C	1: 131,633,385 (GRCm39)	F78L	probably benign	Het
Riok3	T	A	18: 12,269,844 (GRCm39)	Y92N	probably benign	Het
Rpap2	T	C	5: 107,768,361 (GRCm39)	S400P	probably benign	Het
Ryr3	C	A	2: 112,705,478 (GRCm39)	G792V	probably damaging	Het
Septin3	A	G	15: 82,170,092 (GRCm39)	E206G	probably damaging	Het
Stkld1	T	C	2: 26,840,679 (GRCm39)	S454P	probably damaging	Het
Tex15	T	A	8: 34,047,401 (GRCm39)	H159Q	probably damaging	Het
Tmed6	C	T	8: 107,790,793 (GRCm39)	V85I	probably benign	Het
Vmn1r174	T	A	7: 23,454,204 (GRCm39)	L290*	probably null	Het
Vmn1r31	A	G	6: 58,449,596 (GRCm39)	S90P	probably damaging	Het
Vmn2r55	T	C	7: 12,404,822 (GRCm39)	T194A	probably damaging	Het
Vmn2r82	A	T	10: 79,192,548 (GRCm39)	I42F	probably damaging	Het
Vps35	G	A	8: 86,014,331 (GRCm39)	P106L	probably damaging	Het
Xrcc6	T	A	15: 81,906,661 (GRCm39)	Y69N	probably damaging	Het
Zbtb14	C	T	17: 69,695,465 (GRCm39)	P388S	probably damaging	Het
Zfp541	C	T	7: 15,817,261 (GRCm39)	A902V	probably benign	Het

Other mutations in Tdh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00843:Tdh	APN	14	63,733,213 (GRCm39)	missense	probably damaging	1.00
IGL02047:Tdh	APN	14	63,734,407 (GRCm39)	missense	probably benign	0.07
R0126:Tdh	UTSW	14	63,735,042 (GRCm39)	splice site	probably benign
R1530:Tdh	UTSW	14	63,733,504 (GRCm39)	missense	probably damaging	1.00
R3748:Tdh	UTSW	14	63,733,442 (GRCm39)	missense	probably benign	0.26
R4646:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R4647:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R4648:Tdh	UTSW	14	63,731,205 (GRCm39)	missense	possibly damaging	0.51
R5038:Tdh	UTSW	14	63,733,575 (GRCm39)	nonsense	probably null
R5275:Tdh	UTSW	14	63,733,558 (GRCm39)	missense	probably damaging	1.00
R5295:Tdh	UTSW	14	63,733,558 (GRCm39)	missense	probably damaging	1.00
R6319:Tdh	UTSW	14	63,733,186 (GRCm39)	missense	probably benign	0.00
R6825:Tdh	UTSW	14	63,733,281 (GRCm39)	missense	probably damaging	0.99
R7218:Tdh	UTSW	14	63,733,206 (GRCm39)	missense	probably damaging	1.00
R7528:Tdh	UTSW	14	63,731,460 (GRCm39)	missense	probably damaging	1.00
R7732:Tdh	UTSW	14	63,733,507 (GRCm39)	missense	probably damaging	1.00
R8238:Tdh	UTSW	14	63,733,173 (GRCm39)	missense	probably damaging	1.00
R8492:Tdh	UTSW	14	63,730,269 (GRCm39)	missense	probably damaging	1.00
R9010:Tdh	UTSW	14	63,737,704 (GRCm39)	missense	probably benign	0.00
R9043:Tdh	UTSW	14	63,730,278 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GCAGGACACACAGAACCTTG -3'
(R):5'- CGTATCAGCTGGCTGTTTCAC -3'

Sequencing Primer
(F):5'- CACAGAACCTTGAGCAATCTTG -3'
(R):5'- GAATATAACTGGTGAGTGGTTG -3'

Posted On

2015-09-24