Incidental Mutation 'R4562:Lypd8'
ID |
343154 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Lypd8
|
Ensembl Gene |
ENSMUSG00000013643 |
Gene Name |
LY6/PLAUR domain containing 8 |
Synonyms |
2210415F13Rik |
MMRRC Submission |
041787-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.069)
|
Stock # |
R4562 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
11 |
Chromosomal Location |
58269869-58281365 bp(+) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
T to A
at 58273215 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000104454
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000013787]
[ENSMUST00000108826]
|
AlphaFold |
Q9D7S0 |
Predicted Effect |
probably null
Transcript: ENSMUST00000013787
|
SMART Domains |
Protein: ENSMUSP00000013787 Gene: ENSMUSG00000013643
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
Pfam:UPAR_LY6
|
23 |
105 |
3.4e-5 |
PFAM |
Pfam:UPAR_LY6
|
121 |
197 |
2.3e-5 |
PFAM |
low complexity region
|
199 |
212 |
N/A |
INTRINSIC |
low complexity region
|
248 |
254 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000108826
|
SMART Domains |
Protein: ENSMUSP00000104454 Gene: ENSMUSG00000013643
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
Pfam:UPAR_LY6
|
23 |
105 |
1.9e-4 |
PFAM |
Pfam:UPAR_LY6
|
121 |
197 |
4.9e-5 |
PFAM |
low complexity region
|
199 |
212 |
N/A |
INTRINSIC |
low complexity region
|
248 |
254 |
N/A |
INTRINSIC |
|
Meta Mutation Damage Score |
0.9706 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.9%
|
Validation Efficiency |
100% (53/53) |
MGI Phenotype |
FUNCTION: This gene encodes a member of the Ly6/PLAUR family of cysteine-rich proteins that plays an important role in the protection of colonic epithelium from flagellated microbiota. The encoded protein undergoes proteolytic processing to generate a mature, glycosylphosphatidylinositol-anchored protein that is localized to the apical surface of the colonic epithelial cells. Mice lacking the encoded protein are sensitive to chemically induced intestinal inflammation. [provided by RefSeq, Aug 2016] PHENOTYPE: No notable phenotype was detected in a high throughput screen of homozygous mice. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 52 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acad9 |
G |
A |
3: 36,120,331 (GRCm39) |
R25K |
probably benign |
Het |
Acap1 |
C |
T |
11: 69,776,177 (GRCm39) |
|
probably benign |
Het |
Aox1 |
T |
C |
1: 58,098,215 (GRCm39) |
L309P |
probably damaging |
Het |
Asap2 |
A |
G |
12: 21,162,094 (GRCm39) |
D17G |
probably damaging |
Het |
Atp8b1 |
A |
T |
18: 64,689,962 (GRCm39) |
V590D |
probably damaging |
Het |
Bace2 |
G |
A |
16: 97,223,180 (GRCm39) |
R368Q |
probably damaging |
Het |
Cad |
G |
A |
5: 31,215,477 (GRCm39) |
S96N |
possibly damaging |
Het |
Csmd3 |
T |
C |
15: 47,763,240 (GRCm39) |
T1303A |
probably benign |
Het |
Defa24 |
A |
G |
8: 22,224,523 (GRCm39) |
|
probably benign |
Het |
Dffb |
A |
G |
4: 154,049,913 (GRCm39) |
C317R |
probably damaging |
Het |
Erap1 |
T |
C |
13: 74,821,778 (GRCm39) |
V711A |
probably benign |
Het |
Esco1 |
A |
G |
18: 10,595,074 (GRCm39) |
S71P |
possibly damaging |
Het |
Evpl |
G |
A |
11: 116,124,225 (GRCm39) |
T198M |
possibly damaging |
Het |
Gm10797 |
A |
G |
10: 67,408,515 (GRCm39) |
|
noncoding transcript |
Het |
Gm10822 |
C |
T |
2: 73,729,833 (GRCm39) |
|
noncoding transcript |
Het |
Huwe1 |
A |
T |
X: 150,646,955 (GRCm39) |
I682F |
probably damaging |
Het |
Ift22 |
A |
G |
5: 136,941,724 (GRCm39) |
E152G |
probably benign |
Het |
Ighv3-5 |
T |
A |
12: 114,226,498 (GRCm39) |
T25S |
possibly damaging |
Het |
Ivl |
CCTGCTGCTGCT |
CCTGCTGCTGCTGCT |
3: 92,479,262 (GRCm39) |
|
probably benign |
Het |
Kcna5 |
T |
C |
6: 126,511,303 (GRCm39) |
H275R |
probably benign |
Het |
Kdm7a |
C |
T |
6: 39,129,757 (GRCm39) |
R473Q |
probably damaging |
Het |
Klf14 |
G |
A |
6: 30,935,394 (GRCm39) |
A80V |
probably damaging |
Het |
Lrrc71 |
T |
A |
3: 87,652,715 (GRCm39) |
|
probably benign |
Het |
Mef2b |
G |
A |
8: 70,619,918 (GRCm39) |
D345N |
probably damaging |
Het |
Mslnl |
G |
A |
17: 25,961,908 (GRCm39) |
V128M |
probably damaging |
Het |
Mtmr10 |
C |
T |
7: 63,963,907 (GRCm39) |
T214M |
possibly damaging |
Het |
Or10g9b |
A |
G |
9: 39,917,577 (GRCm39) |
S223P |
probably damaging |
Het |
Or13g1 |
A |
G |
7: 85,956,360 (GRCm39) |
|
probably benign |
Het |
Or4f4b |
A |
T |
2: 111,313,909 (GRCm39) |
M45L |
probably benign |
Het |
Orc1 |
T |
C |
4: 108,459,252 (GRCm39) |
|
probably null |
Het |
P4htm |
T |
C |
9: 108,459,195 (GRCm39) |
S246G |
probably null |
Het |
Pax2 |
A |
G |
19: 44,824,402 (GRCm39) |
Y374C |
unknown |
Het |
Pde6b |
A |
G |
5: 108,551,234 (GRCm39) |
K173E |
probably benign |
Het |
Pde8a |
T |
A |
7: 80,958,568 (GRCm39) |
Y315* |
probably null |
Het |
Plekhh2 |
A |
G |
17: 84,873,525 (GRCm39) |
D270G |
probably benign |
Het |
Prr5 |
A |
C |
15: 84,626,114 (GRCm39) |
D63A |
probably damaging |
Het |
Robo4 |
CGG |
CG |
9: 37,322,786 (GRCm39) |
|
probably null |
Het |
Ryr1 |
C |
A |
7: 28,774,005 (GRCm39) |
|
probably benign |
Het |
Slc4a1ap |
G |
A |
5: 31,689,373 (GRCm39) |
V347M |
probably damaging |
Het |
Tasor |
A |
G |
14: 27,188,265 (GRCm39) |
T904A |
possibly damaging |
Het |
Tln1 |
C |
A |
4: 43,533,598 (GRCm39) |
A2319S |
probably damaging |
Het |
Tm6sf1 |
G |
A |
7: 81,509,209 (GRCm39) |
A5T |
probably damaging |
Het |
Tmem117 |
A |
T |
15: 94,992,677 (GRCm39) |
M446L |
probably benign |
Het |
Tnfrsf22 |
C |
T |
7: 143,203,313 (GRCm39) |
R19Q |
unknown |
Het |
Tnfsf11 |
T |
C |
14: 78,516,020 (GRCm39) |
D316G |
probably damaging |
Het |
Trerf1 |
G |
A |
17: 47,637,997 (GRCm39) |
|
noncoding transcript |
Het |
Ttc13 |
A |
G |
8: 125,402,016 (GRCm39) |
L657P |
probably damaging |
Het |
Unc79 |
C |
T |
12: 102,957,720 (GRCm39) |
T45I |
probably damaging |
Het |
Usp3 |
G |
T |
9: 66,428,047 (GRCm39) |
|
probably benign |
Het |
Vmn2r-ps158 |
C |
T |
7: 42,672,986 (GRCm39) |
Q130* |
probably null |
Het |
Wdr31 |
A |
C |
4: 62,372,159 (GRCm39) |
L319W |
probably damaging |
Het |
Zfp947 |
G |
T |
17: 22,365,124 (GRCm39) |
Y183* |
probably null |
Het |
|
Other mutations in Lypd8 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01895:Lypd8
|
APN |
11 |
58,281,046 (GRCm39) |
missense |
possibly damaging |
0.53 |
confusion
|
UTSW |
11 |
58,277,583 (GRCm39) |
missense |
probably benign |
0.00 |
quandary
|
UTSW |
11 |
58,275,439 (GRCm39) |
missense |
probably damaging |
1.00 |
R0096:Lypd8
|
UTSW |
11 |
58,277,583 (GRCm39) |
missense |
probably benign |
0.00 |
R0628:Lypd8
|
UTSW |
11 |
58,275,499 (GRCm39) |
missense |
probably damaging |
1.00 |
R0711:Lypd8
|
UTSW |
11 |
58,277,583 (GRCm39) |
missense |
probably benign |
0.00 |
R2294:Lypd8
|
UTSW |
11 |
58,277,680 (GRCm39) |
missense |
probably damaging |
0.99 |
R3033:Lypd8
|
UTSW |
11 |
58,275,453 (GRCm39) |
missense |
probably damaging |
0.99 |
R4610:Lypd8
|
UTSW |
11 |
58,277,675 (GRCm39) |
missense |
probably benign |
0.00 |
R5224:Lypd8
|
UTSW |
11 |
58,277,634 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5468:Lypd8
|
UTSW |
11 |
58,277,586 (GRCm39) |
missense |
probably damaging |
0.96 |
R6213:Lypd8
|
UTSW |
11 |
58,281,160 (GRCm39) |
missense |
probably benign |
|
R6228:Lypd8
|
UTSW |
11 |
58,277,629 (GRCm39) |
missense |
possibly damaging |
0.60 |
R6528:Lypd8
|
UTSW |
11 |
58,275,439 (GRCm39) |
missense |
probably damaging |
1.00 |
R6947:Lypd8
|
UTSW |
11 |
58,273,592 (GRCm39) |
missense |
probably benign |
0.00 |
R7811:Lypd8
|
UTSW |
11 |
58,281,064 (GRCm39) |
missense |
possibly damaging |
0.53 |
R9006:Lypd8
|
UTSW |
11 |
58,277,586 (GRCm39) |
missense |
possibly damaging |
0.77 |
R9209:Lypd8
|
UTSW |
11 |
58,273,640 (GRCm39) |
missense |
possibly damaging |
0.93 |
RF018:Lypd8
|
UTSW |
11 |
58,281,058 (GRCm39) |
small insertion |
probably benign |
|
RF028:Lypd8
|
UTSW |
11 |
58,281,065 (GRCm39) |
small insertion |
probably benign |
|
RF039:Lypd8
|
UTSW |
11 |
58,281,057 (GRCm39) |
small insertion |
probably benign |
|
RF042:Lypd8
|
UTSW |
11 |
58,281,069 (GRCm39) |
small insertion |
probably benign |
|
RF043:Lypd8
|
UTSW |
11 |
58,281,069 (GRCm39) |
small insertion |
probably benign |
|
RF054:Lypd8
|
UTSW |
11 |
58,281,077 (GRCm39) |
small insertion |
probably benign |
|
RF057:Lypd8
|
UTSW |
11 |
58,281,065 (GRCm39) |
small insertion |
probably benign |
|
Z1088:Lypd8
|
UTSW |
11 |
58,277,556 (GRCm39) |
missense |
possibly damaging |
0.92 |
Z1186:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1186:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1186:Lypd8
|
UTSW |
11 |
58,281,064 (GRCm39) |
small insertion |
probably benign |
|
Z1186:Lypd8
|
UTSW |
11 |
58,281,070 (GRCm39) |
small insertion |
probably benign |
|
Z1186:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1186:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1187:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1187:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1187:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1187:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1188:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1188:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1188:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1188:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1189:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1189:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1189:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1189:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1190:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1190:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1190:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1190:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1191:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1191:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
Z1191:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1191:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,273,601 (GRCm39) |
missense |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,281,069 (GRCm39) |
small insertion |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,281,068 (GRCm39) |
small insertion |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,281,061 (GRCm39) |
small insertion |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,281,059 (GRCm39) |
small insertion |
probably benign |
|
Z1192:Lypd8
|
UTSW |
11 |
58,275,489 (GRCm39) |
missense |
probably benign |
0.02 |
Z1192:Lypd8
|
UTSW |
11 |
58,275,475 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
Predicted Primers |
PCR Primer
(F):5'- GCACTAATGCCGTTTCAGC -3'
(R):5'- GCCATGCCCATAAGTTTTGCC -3'
Sequencing Primer
(F):5'- AATGCCGTTTCAGCGTTTTTCAAAC -3'
(R):5'- ATTCACTGTTCCCCGACAGG -3'
|
Posted On |
2015-09-24 |