Mutagenetix > Incidental Mutations

Incidental Mutation 'R0058:Frmd4b'

34336

Institutional Source

Beutler Lab

Gene Symbol

Frmd4b

Ensembl Gene

ENSMUSG00000030064

Gene Name

FERM domain containing 4B

Synonyms

6030440G05Rik, GRSP1

MMRRC Submission

038352-MU

Accession Numbers

Ncbi RefSeq: NM_145148.2; MGI:2141794

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0058 (G1)

Quality Score

209

Status

Validated

Chromosome

Chromosomal Location

97286867-97617541 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 97423499 bp

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 63 (V63A)

Ref Sequence

ENSEMBL: ENSMUSP00000032146 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032146] [ENSMUST00000113355] [ENSMUST00000113359] [ENSMUST00000124050]

Predicted Effect

probably damaging
Transcript: ENSMUST00000032146
AA Change: V63A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000032146
Gene: ENSMUSG00000030064
AA Change: V63A

Domain	Start	End	E-Value	Type
B41	55	260	7.4e-35	SMART
FERM_C	264	365	8.7e-26	SMART
Pfam:DUF3338	395	529	4.5e-55	PFAM
coiled coil region	534	558	N/A	INTRINSIC
low complexity region	571	592	N/A	INTRINSIC
low complexity region	731	742	N/A	INTRINSIC
low complexity region	941	958	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000113353

SMART Domains

Protein: ENSMUSP00000108980
Gene: ENSMUSG00000030064

Domain	Start	End	E-Value	Type
B41	55	260	7.4e-35	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000113355
AA Change: V9A

PolyPhen 2 Score 0.862 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108982
Gene: ENSMUSG00000030064
AA Change: V9A

Domain	Start	End	E-Value	Type
B41	1	206	4.5e-37	SMART
FERM_C	210	311	4.1e-30	SMART
Pfam:DUF3338	340	476	6.9e-58	PFAM
coiled coil region	480	504	N/A	INTRINSIC
low complexity region	517	538	N/A	INTRINSIC
low complexity region	677	688	N/A	INTRINSIC
low complexity region	887	904	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000113359
AA Change: V17A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000108986
Gene: ENSMUSG00000030064
AA Change: V17A

Domain	Start	End	E-Value	Type
B41	9	214	7.4e-35	SMART
FERM_C	218	319	8.7e-26	SMART
Pfam:DUF3338	348	484	8e-61	PFAM
coiled coil region	488	512	N/A	INTRINSIC
low complexity region	525	546	N/A	INTRINSIC
low complexity region	685	696	N/A	INTRINSIC
low complexity region	895	912	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000124050
AA Change: V9A

PolyPhen 2 Score 0.970 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000145240
Gene: ENSMUSG00000030064
AA Change: V9A

Domain	Start	End	E-Value	Type
Pfam:FERM_N	9	71	3.2e-14	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142589

Meta Mutation Damage Score

0.5909

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.0%
20x: 94.8%

Validation Efficiency

100% (74/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a GRP1-binding protein which contains a FERM protein interaction domain as well as two coiled coil domains. This protein may play a role as a scaffolding protein. [provided by RefSeq, Mar 2014]

Allele List at MGI

All alleles(24) : Targeted(2) Gene trapped(22)

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ache	T	G	5: 137,290,842	V270G	probably damaging	Het
Acss1	A	T	2: 150,628,539	W394R	probably damaging	Het
Adgrv1	A	G	13: 81,182,672	V6088A	possibly damaging	Het
Ankrd36	A	G	11: 5,630,691		probably benign	Het
Anxa1	A	T	19: 20,383,777	Y84N	probably damaging	Het
Arnt2	G	A	7: 84,347,530	R63C	probably damaging	Het
Avpr1b	A	G	1: 131,599,786	T16A	probably benign	Het
Bpifb1	G	A	2: 154,206,540	R165H	possibly damaging	Het
Cables1	A	G	18: 11,923,413	E316G	possibly damaging	Het
Cadm1	A	T	9: 47,850,331	I427L	probably damaging	Het
Ccdc97	T	C	7: 25,715,980	D86G	probably benign	Het
Cgnl1	C	A	9: 71,641,397	D1081Y	probably damaging	Het
Cgnl1	T	A	9: 71,724,840	R410W	probably damaging	Het
Cntnap4	G	A	8: 112,785,784	E593K	probably damaging	Het
Dazap1	T	C	10: 80,261,581		probably benign	Het
Dip2b	A	G	15: 100,215,240	E1512G	probably benign	Het
Dock1	G	A	7: 135,108,761	V1171M	possibly damaging	Het
Dock5	A	T	14: 67,781,036	F1230Y	probably benign	Het
Dym	G	A	18: 75,043,172	E15K	possibly damaging	Het
Ednra	C	A	8: 77,667,322		probably null	Het
Faf1	A	G	4: 109,736,624	Q133R	probably benign	Het
Fbxw28	A	G	9: 109,328,211	I323T	probably benign	Het
Fcer2a	T	C	8: 3,688,111		probably benign	Het
Fmo2	A	T	1: 162,886,324	S204R	probably benign	Het
Fzd8	G	A	18: 9,213,985	A356T	possibly damaging	Het
Ghitm	A	G	14: 37,131,592	L97P	probably damaging	Het
Gins4	A	G	8: 23,229,510		probably benign	Het
Golga3	T	A	5: 110,202,777	F766Y	possibly damaging	Het
Hapln1	T	C	13: 89,607,878	I267T	probably benign	Het
Helz	A	T	11: 107,672,558		probably benign	Het
Herc2	T	C	7: 56,170,483	V2851A	possibly damaging	Het
Igkv8-18	G	A	6: 70,356,121		probably benign	Het
Igll1	A	T	16: 16,863,876	V5E	probably benign	Het
Irx3	T	C	8: 91,800,540	T179A	possibly damaging	Het
Kif16b	A	G	2: 142,857,305		probably null	Het
Limk1	A	T	5: 134,659,871	W507R	probably damaging	Het
Marf1	C	T	16: 14,142,534	A549T	probably damaging	Het
Mtif3	C	A	5: 146,956,921	V159F	probably benign	Het
Myh6	C	T	14: 54,963,404	R169Q	probably damaging	Het
Ncoa7	T	A	10: 30,647,541	D887V	probably damaging	Het
Obox7	C	T	7: 14,664,388	P76S	probably benign	Het
Olfr1335	A	G	4: 118,809,480	M128T	probably benign	Het
Olfr323	A	T	11: 58,625,668	I126N	probably damaging	Het
Pitpnm2	G	A	5: 124,124,030	A862V	probably damaging	Het
Pkd1	G	C	17: 24,564,703	A162P	probably benign	Het
Plce1	A	G	19: 38,525,184	D309G	possibly damaging	Het
Plk4	T	C	3: 40,805,872	V401A	probably benign	Het
Prdx3	T	C	19: 60,874,512		probably benign	Het
Prrc2c	C	T	1: 162,698,884	V253I	unknown	Het
Ranbp2	T	A	10: 58,480,531	S2358T	probably damaging	Het
Setd2	T	A	9: 110,594,426	V2183E	probably damaging	Het
Sgsm1	T	A	5: 113,285,087	S232C	probably damaging	Het
Skint6	A	T	4: 113,046,815		probably benign	Het
Slc15a2	A	G	16: 36,754,547	I531T	probably benign	Het
Slc36a1	C	T	11: 55,221,994		probably benign	Het
Sorbs2	T	A	8: 45,785,254		probably null	Het
Sorbs2	C	A	8: 45,796,263	D831E	probably damaging	Het
Sptan1	T	C	2: 29,993,696		probably null	Het
Stam	T	C	2: 14,138,141	C336R	probably damaging	Het
Stil	G	T	4: 115,041,298	A1042S	probably damaging	Het
Stxbp5l	T	A	16: 37,142,374	D773V	possibly damaging	Het
Sugct	A	T	13: 17,672,581	L39Q	probably damaging	Het
Tep1	A	G	14: 50,834,065	V2041A	possibly damaging	Het
Tex15	C	T	8: 33,581,502		probably benign	Het
Tlr9	T	G	9: 106,224,965	L485R	possibly damaging	Het
Tmem207	A	G	16: 26,524,829		probably benign	Het
Triml2	T	C	8: 43,185,269		probably benign	Het
Trip6	A	G	5: 137,310,845		probably benign	Het
Tspear	T	C	10: 77,869,631	F288L	probably benign	Het
Vmn1r179	C	T	7: 23,929,167	T261I	possibly damaging	Het
Zfp644	A	T	5: 106,637,003	S559R	possibly damaging	Het

Other mutations in Frmd4b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00849:Frmd4b	APN	6	97308060	missense	probably damaging	1.00
IGL01478:Frmd4b	APN	6	97328293	missense	probably damaging	1.00
IGL01760:Frmd4b	APN	6	97308702	missense	probably damaging	1.00
IGL01777:Frmd4b	APN	6	97295944	missense	probably benign	0.03
IGL01960:Frmd4b	APN	6	97295780	missense	possibly damaging	0.93
IGL02408:Frmd4b	APN	6	97295809	missense	probably damaging	1.00
IGL02429:Frmd4b	APN	6	97325429	splice site	probably benign
IGL02525:Frmd4b	APN	6	97412533	missense	probably damaging	1.00
IGL02618:Frmd4b	APN	6	97308105	nonsense	probably null
IGL03051:Frmd4b	APN	6	97295982	nonsense	probably null
IGL03120:Frmd4b	APN	6	97396245	missense	possibly damaging	0.88
IGL03218:Frmd4b	APN	6	97308114	missense	probably benign	0.01
IGL03260:Frmd4b	APN	6	97396224	missense	probably damaging	1.00
IGL02984:Frmd4b	UTSW	6	97296260	missense	probably damaging	0.96
P0031:Frmd4b	UTSW	6	97354030	missense	probably damaging	1.00
R0055:Frmd4b	UTSW	6	97323649	splice site	probably benign
R0055:Frmd4b	UTSW	6	97323649	splice site	probably benign
R0255:Frmd4b	UTSW	6	97308086	missense	probably damaging	1.00
R0437:Frmd4b	UTSW	6	97423463	missense	probably damaging	1.00
R0594:Frmd4b	UTSW	6	97325426	splice site	probably benign
R1525:Frmd4b	UTSW	6	97296386	missense	probably damaging	0.97
R1640:Frmd4b	UTSW	6	97308673	missense	possibly damaging	0.91
R1768:Frmd4b	UTSW	6	97306764	missense	possibly damaging	0.68
R1923:Frmd4b	UTSW	6	97288454	missense	probably benign	0.33
R2056:Frmd4b	UTSW	6	97412487	critical splice donor site	probably null
R2192:Frmd4b	UTSW	6	97487616	missense	probably damaging	0.98
R3809:Frmd4b	UTSW	6	97323729	missense	possibly damaging	0.49
R3831:Frmd4b	UTSW	6	97412525	nonsense	probably null
R4466:Frmd4b	UTSW	6	97323653	critical splice donor site	probably null
R4536:Frmd4b	UTSW	6	97310732	missense	possibly damaging	0.57
R4652:Frmd4b	UTSW	6	97295755	missense	probably benign	0.38
R4679:Frmd4b	UTSW	6	97295666	missense	possibly damaging	0.94
R4735:Frmd4b	UTSW	6	97459259	start gained	probably benign
R4793:Frmd4b	UTSW	6	97295861	missense	probably damaging	0.99
R4940:Frmd4b	UTSW	6	97298090	missense	probably damaging	1.00
R4948:Frmd4b	UTSW	6	97306730	missense	probably benign	0.06
R5092:Frmd4b	UTSW	6	97295980	missense	probably damaging	0.98
R5119:Frmd4b	UTSW	6	97300314	missense	probably benign	0.03
R5289:Frmd4b	UTSW	6	97302348	splice site	probably null
R5610:Frmd4b	UTSW	6	97306791	missense	probably benign
R5690:Frmd4b	UTSW	6	97353203	missense	possibly damaging	0.56
R6248:Frmd4b	UTSW	6	97459212	missense	probably benign	0.10
R6437:Frmd4b	UTSW	6	97296267	missense	probably damaging	1.00
R6459:Frmd4b	UTSW	6	97487640	missense	probably damaging	1.00
R6825:Frmd4b	UTSW	6	97325476	missense	possibly damaging	0.89
R6964:Frmd4b	UTSW	6	97305197	missense	probably damaging	1.00
R7110:Frmd4b	UTSW	6	97296231	nonsense	probably null
R7154:Frmd4b	UTSW	6	97306746	missense	probably damaging	1.00
R7764:Frmd4b	UTSW	6	97295930	missense	probably damaging	1.00
R8073:Frmd4b	UTSW	6	97306713	missense	probably benign	0.03
R8382:Frmd4b	UTSW	6	97305248	missense	probably benign
X0020:Frmd4b	UTSW	6	97305365	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TGCAAAGAGCTTCCACTCACATGTATC -3'
(R):5'- GCACGCCTATACTAAGTCTGCTTCTG -3'

Sequencing Primer
(F):5'- GCTACAATAATTGTCCTTAGAGCCAC -3'
(R):5'- ACTAAGTCTGCTTCTGGGAATC -3'

Posted On

2013-05-09