Mutagenetix > Incidental Mutation

Incidental Mutation 'R4572:Hmbox1'

343419

Institutional Source

Beutler Lab

Gene Symbol

Hmbox1

Ensembl Gene

ENSMUSG00000021972

Gene Name

homeobox containing 1

Synonyms

F830020C16Rik

MMRRC Submission

041796-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.848) question?

Stock #

R4572 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

64811600-64949871 bp(-) (GRCm38)

Type of Mutation

splice site (6 bp from exon)

DNA Base Change (assembly)

A to G at 64903233 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022544] [ENSMUST00000022544] [ENSMUST00000067843] [ENSMUST00000067843] [ENSMUST00000175744] [ENSMUST00000175744] [ENSMUST00000175905] [ENSMUST00000175905] [ENSMUST00000175905] [ENSMUST00000175905] [ENSMUST00000176128] [ENSMUST00000176128] [ENSMUST00000176128] [ENSMUST00000176128] [ENSMUST00000176489] [ENSMUST00000176489] [ENSMUST00000176489] [ENSMUST00000176489] [ENSMUST00000176832] [ENSMUST00000176832] [ENSMUST00000176832] [ENSMUST00000176832]

AlphaFold

Q8BJA3

Predicted Effect

probably null
Transcript: ENSMUST00000022544

SMART Domains

Protein: ENSMUSP00000022544
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.3e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000022544

SMART Domains

Protein: ENSMUSP00000022544
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.3e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000067843

SMART Domains

Protein: ENSMUSP00000066905
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.5e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000067843

SMART Domains

Protein: ENSMUSP00000066905
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	2.5e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	372	385	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000175744

SMART Domains

Protein: ENSMUSP00000135272
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	382	404	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000175744

SMART Domains

Protein: ENSMUSP00000135272
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART
low complexity region	382	404	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000175905

SMART Domains

Protein: ENSMUSP00000135657
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.5e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000175905

SMART Domains

Protein: ENSMUSP00000135657
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.5e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000175905

SMART Domains

Protein: ENSMUSP00000135657
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.5e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000175905

SMART Domains

Protein: ENSMUSP00000135657
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.5e-15	PFAM
HOX	267	344	6.18e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176128

SMART Domains

Protein: ENSMUSP00000135448
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	25	227	4.4e-66	PFAM
HOX	267	344	6.18e-9	SMART
low complexity region	373	386	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176128

SMART Domains

Protein: ENSMUSP00000135448
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	25	227	4.4e-66	PFAM
HOX	267	344	6.18e-9	SMART
low complexity region	373	386	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176128

SMART Domains

Protein: ENSMUSP00000135448
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	25	227	4.4e-66	PFAM
HOX	267	344	6.18e-9	SMART
low complexity region	373	386	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176128

SMART Domains

Protein: ENSMUSP00000135448
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	25	227	4.4e-66	PFAM
HOX	267	344	6.18e-9	SMART
low complexity region	373	386	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176489

SMART Domains

Protein: ENSMUSP00000134824
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.1e-15	PFAM
HOX	267	355	1.89e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176489

SMART Domains

Protein: ENSMUSP00000134824
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.1e-15	PFAM
HOX	267	355	1.89e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176489

SMART Domains

Protein: ENSMUSP00000134824
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.1e-15	PFAM
HOX	267	355	1.89e-1	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176489

SMART Domains

Protein: ENSMUSP00000134824
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.1e-15	PFAM
HOX	267	355	1.89e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176657

Predicted Effect

probably null
Transcript: ENSMUST00000176832

SMART Domains

Protein: ENSMUSP00000135211
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176832

SMART Domains

Protein: ENSMUSP00000135211
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176832

SMART Domains

Protein: ENSMUSP00000135211
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000176832

SMART Domains

Protein: ENSMUSP00000135211
Gene: ENSMUSG00000021972

Domain	Start	End	E-Value	Type
Pfam:HNF-1_N	19	231	1.4e-15	PFAM
HOX	267	344	8.74e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000177326

Predicted Effect

probably null
Transcript: ENSMUST00000177326

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

100% (71/71)

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trapped allele exhibit absence of TERT binding to chromatin as shown by subcellular fractionation analysis of mouse embryonic fibroblasts. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	A	T	11: 110,216,548	I747N	probably benign	Het
Adamtsl2	A	G	2: 27,083,256	Y97C	probably damaging	Het
Alox12e	A	G	11: 70,321,181		probably benign	Het
Alpk2	A	T	18: 65,281,004	S2014T	probably damaging	Het
Ankrd36	A	T	11: 5,689,340		probably null	Het
Apobec1	T	C	6: 122,581,397	D133G	probably damaging	Het
Arfgef1	A	T	1: 10,213,141	I181N	probably damaging	Het
C130060K24Rik	A	T	6: 65,454,991	M293L	probably benign	Het
Cilp2	A	G	8: 69,882,410	V646A	probably damaging	Het
Clasrp	A	G	7: 19,584,464		probably null	Het
Cnot2	T	C	10: 116,494,846	T423A	probably benign	Het
Crtap	T	C	9: 114,384,806	D227G	probably benign	Het
Cyp17a1	A	G	19: 46,670,551	F217S	probably damaging	Het
Ddx60	A	G	8: 61,987,421	M1036V	probably damaging	Het
Dnah11	A	T	12: 118,010,125	I2818N	probably benign	Het
Dok6	T	A	18: 89,473,947	I169F	possibly damaging	Het
Duox2	T	A	2: 122,281,726	R1326S	probably benign	Het
Epha10	A	G	4: 124,902,568	T357A	unknown	Het
Ephb2	A	C	4: 136,655,940	F942C	probably damaging	Het
Fscn3	T	A	6: 28,430,635		probably null	Het
Gabrb2	A	G	11: 42,593,917	N267S	possibly damaging	Het
Gabrr3	A	T	16: 59,461,638	Y452F	probably benign	Het
Gen1	A	G	12: 11,242,418	S457P	probably damaging	Het
Gm1993	C	T	X: 25,560,356	R77H	probably damaging	Het
Gm5592	G	A	7: 41,216,159		probably benign	Het
Hus1	A	T	11: 9,007,617		probably null	Het
Ino80	G	A	2: 119,402,358	R1160W	probably damaging	Het
Kalrn	A	T	16: 34,392,042	F27L	probably damaging	Het
Kri1	A	T	9: 21,280,384	F187L	probably damaging	Het
Lekr1	A	T	3: 65,783,915		noncoding transcript	Het
Mapk15	T	C	15: 75,998,750		probably benign	Het
Mrgpre	G	A	7: 143,781,104	L221F	probably damaging	Het
Mrpl50	A	T	4: 49,514,399	S91T	possibly damaging	Het
Muc4	T	C	16: 32,753,802	I1226T	probably benign	Het
Mup15	A	G	4: 61,438,217		probably null	Het
Ncapd3	A	G	9: 27,094,615	D1469G	probably damaging	Het
Nlrp9b	G	A	7: 20,026,681		probably null	Het
Npy6r	A	T	18: 44,275,917	Y135F	probably benign	Het
Olfr862	A	C	9: 19,883,979	C109G	probably benign	Het
Phf14	G	A	6: 12,006,824	R825Q	probably damaging	Het
Pigg	A	G	5: 108,332,885	M379V	probably benign	Het
Plppr3	T	A	10: 79,866,063	Q315L	probably benign	Het
Plxnd1	C	A	6: 115,955,756	C1921F	probably damaging	Het
Ptger4	A	C	15: 5,243,133	S2A	probably benign	Het
Rab4a	A	T	8: 123,834,060	D196V	probably benign	Het
Rbck1	G	A	2: 152,318,733	Q428*	probably null	Het
Rgs14	A	T	13: 55,380,062	N266I	probably damaging	Het
Serpina1c	A	T	12: 103,898,708		probably benign	Het
Sesn3	G	A	9: 14,321,220	R263H	probably benign	Het
Slfn1	A	T	11: 83,121,463	D135V	probably benign	Het
Spata17	T	C	1: 187,193,996	K46E	possibly damaging	Het
Srcin1	A	C	11: 97,534,934	D432E	probably damaging	Het
Stxbp5	T	C	10: 9,838,144	E217G	probably damaging	Het
Terf2ip	A	G	8: 112,012,017	D179G	probably damaging	Het
Tll1	A	G	8: 64,056,309	F556L	possibly damaging	Het
Tmed4	CTCTTTCT	CTCT	11: 6,274,461		probably null	Het
Trappc9	G	T	15: 72,937,067	Q537K	possibly damaging	Het
Trim30a	G	T	7: 104,411,188	C460*	probably null	Het
Trim35	T	C	14: 66,307,873	Y298H	probably damaging	Het
Ugt3a1	T	A	15: 9,306,393	H209Q	probably benign	Het
Ulk4	T	C	9: 121,192,764	K627R	probably damaging	Het
Wnk1	T	C	6: 119,951,911	T1319A	possibly damaging	Het
Wnt9b	G	A	11: 103,732,155	R141C	probably damaging	Het
Zfp735	A	G	11: 73,689,785	M37V	probably benign	Het
Zmym1	A	T	4: 127,050,835	N186K	probably benign	Het

Other mutations in Hmbox1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03183:Hmbox1	APN	14	64887599	missense	probably damaging	1.00
R0962:Hmbox1	UTSW	14	64896774	missense	probably benign	0.00
R1144:Hmbox1	UTSW	14	64825683	missense	probably damaging	1.00
R1467:Hmbox1	UTSW	14	64861578	missense	possibly damaging	0.90
R1467:Hmbox1	UTSW	14	64861578	missense	possibly damaging	0.90
R1856:Hmbox1	UTSW	14	64828648	missense	probably damaging	1.00
R2101:Hmbox1	UTSW	14	64828579	splice site	probably benign
R3707:Hmbox1	UTSW	14	64896836	missense	probably benign	0.02
R4531:Hmbox1	UTSW	14	64825489	missense	probably benign
R4570:Hmbox1	UTSW	14	64823662	missense	possibly damaging	0.95
R4740:Hmbox1	UTSW	14	64897034	missense	probably damaging	1.00
R4807:Hmbox1	UTSW	14	64825549	intron	probably benign
R5112:Hmbox1	UTSW	14	64825612	missense	probably damaging	1.00
R5327:Hmbox1	UTSW	14	64896695	missense	possibly damaging	0.77
R5575:Hmbox1	UTSW	14	64823164	missense	probably benign
R5928:Hmbox1	UTSW	14	64823673	missense	possibly damaging	0.55
R6934:Hmbox1	UTSW	14	64896832	missense	probably benign	0.33
R7155:Hmbox1	UTSW	14	64897037	missense	probably damaging	1.00
R7302:Hmbox1	UTSW	14	64828666	missense	probably damaging	1.00
R7499:Hmbox1	UTSW	14	64896677	missense	possibly damaging	0.76
R8361:Hmbox1	UTSW	14	64896840	missense	possibly damaging	0.86
R8708:Hmbox1	UTSW	14	64823640	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CCATGTCAAAGAGATACATCATCTG -3'
(R):5'- GTGGGTGGTTCCTGATAACAAG -3'

Sequencing Primer
(F):5'- CTGGAGTTTGATCCCACATGG -3'
(R):5'- CTTCCCAAGGAAATCATTTGGAAAAC -3'

Posted On

2015-09-24