Mutagenetix > Incidental Mutation

Incidental Mutation 'R4579:H2-T5'

343541

Institutional Source

Beutler Lab

Gene Symbol

H2-T5

Ensembl Gene

Gene Name

histocompatibility 2, T region locus 5

Synonyms

Gm8909, H2-T26, H-2T5

MMRRC Submission

041801-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R4579 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

36475335-36479429 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

C to T at 36472649 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000133663 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040467] [ENSMUST00000097335] [ENSMUST00000173353]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000040467

SMART Domains

Protein: ENSMUSP00000036092
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	26	204	5.9e-96	PFAM
IGc1	223	294	8.23e-23	SMART
transmembrane domain	310	332	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000056774

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000090537

SMART Domains

Protein: ENSMUSP00000088025
Gene: ENSMUSG00000038311

Domain	Start	End	E-Value	Type
SCOP:d2sqca2	105	173	2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000097335

SMART Domains

Protein: ENSMUSP00000094947
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	54	232	7.3e-96	PFAM
IGc1	251	322	8.23e-23	SMART
transmembrane domain	338	360	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173025

SMART Domains

Protein: ENSMUSP00000133655
Gene: ENSMUSG00000038311

Domain	Start	End	E-Value	Type
SCOP:d2sqca2	148	216	2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173353

SMART Domains

Protein: ENSMUSP00000133663
Gene: ENSMUSG00000073402

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Pfam:MHC_I	54	232	3.9e-93	PFAM
IGc1	251	322	8.23e-23	SMART
transmembrane domain	338	360	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173625

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174345

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174752

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174693

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

97% (88/91)

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A930004D18Rik	A	G	2: 18,031,848 (GRCm39)	I90T	probably damaging	Het
Acox3	A	G	5: 35,761,987 (GRCm39)	N444D	probably damaging	Het
Adamts16	A	G	13: 70,927,743 (GRCm39)	Y499H	probably damaging	Het
Ajm1	T	A	2: 25,469,661 (GRCm39)	R83S	possibly damaging	Het
Ank2	A	T	3: 126,752,612 (GRCm39)	V368D	probably damaging	Het
Atad5	T	C	11: 79,986,017 (GRCm39)	V368A	probably damaging	Het
Atp13a5	T	C	16: 29,067,090 (GRCm39)		probably null	Het
Bdh1	A	T	16: 31,254,954 (GRCm39)		probably benign	Het
Bmp6	A	T	13: 38,653,701 (GRCm39)	Y256F	probably damaging	Het
Bub1b	C	A	2: 118,453,657 (GRCm39)	S496*	probably null	Het
Capn15	C	T	17: 26,178,811 (GRCm39)	R1128H	probably damaging	Het
Ccnf	T	A	17: 24,450,303 (GRCm39)	R461*	probably null	Het
Col6a1	C	T	10: 76,547,191 (GRCm39)	V725I	unknown	Het
Cp	T	C	3: 20,011,599 (GRCm39)		probably null	Het
Cul2	T	C	18: 3,430,957 (GRCm39)	V577A	probably benign	Het
Cux2	A	T	5: 121,998,716 (GRCm39)	I1408K	probably benign	Het
Cyp2c69	T	A	19: 39,869,630 (GRCm39)	T130S	possibly damaging	Het
Cyp3a57	A	G	5: 145,311,074 (GRCm39)	T278A	probably benign	Het
Dchs1	T	G	7: 105,403,972 (GRCm39)	T2857P	probably damaging	Het
Dchs1	A	G	7: 105,408,180 (GRCm39)	M1884T	probably benign	Het
Dnah3	T	C	7: 119,608,554 (GRCm39)	S1802G	probably damaging	Het
Dner	T	C	1: 84,361,537 (GRCm39)	S691G	probably damaging	Het
Dzip1l	A	T	9: 99,529,267 (GRCm39)	Q332L	probably damaging	Het
Eprs1	A	G	1: 185,133,804 (GRCm39)	Y827C	probably damaging	Het
Ermp1	A	T	19: 29,594,051 (GRCm39)	N706K	probably damaging	Het
F830045P16Rik	A	G	2: 129,305,423 (GRCm39)	L317S	probably damaging	Het
Fam120c	G	T	X: 150,219,179 (GRCm39)	G696W	probably damaging	Het
Fance	T	A	17: 28,536,125 (GRCm39)		probably null	Het
Fancl	G	T	11: 26,418,423 (GRCm39)		probably null	Het
Fbxo30	T	A	10: 11,165,293 (GRCm39)	V5E	probably benign	Het
Foxn4	A	T	5: 114,394,886 (GRCm39)	I347N	possibly damaging	Het
Galr2	A	T	11: 116,172,325 (GRCm39)	D5V	probably benign	Het
Gm4845	T	G	1: 141,184,865 (GRCm39)		noncoding transcript	Het
Gnao1	A	T	8: 94,693,532 (GRCm39)	Q73L	probably damaging	Het
Gnpat	T	A	8: 125,605,241 (GRCm39)		probably null	Het
Hectd1	A	G	12: 51,791,356 (GRCm39)	M2594T	probably damaging	Het
Hint3	T	C	10: 30,486,428 (GRCm39)	H117R	probably damaging	Het
Hsd3b6	A	G	3: 98,713,541 (GRCm39)	F253L	probably damaging	Het
Itgal	A	G	7: 126,904,466 (GRCm39)	D313G	possibly damaging	Het
Kbtbd2	A	T	6: 56,755,893 (GRCm39)	D614E	probably damaging	Het
Ksr2	A	T	5: 117,894,335 (GRCm39)	I825F	probably damaging	Het
L3mbtl4	A	T	17: 69,071,635 (GRCm39)	S521C	probably benign	Het
Lamc1	T	C	1: 153,123,015 (GRCm39)	N725S	probably damaging	Het
Med1	T	G	11: 98,049,248 (GRCm39)	E516A	possibly damaging	Het
Mical3	A	T	6: 120,935,660 (GRCm39)	V1622E	probably benign	Het
Miip	G	A	4: 147,945,518 (GRCm39)	P373S	probably damaging	Het
Myo7a	C	A	7: 97,722,400 (GRCm39)	S1175I	probably damaging	Het
Ndst3	A	T	3: 123,340,474 (GRCm39)	D781E	probably benign	Het
Nf1	T	A	11: 79,359,583 (GRCm39)	V1407E	probably damaging	Het
Opalin	A	G	19: 41,056,196 (GRCm39)	L33P	probably damaging	Het
Or2f2	A	T	6: 42,767,458 (GRCm39)	I162F	probably benign	Het
Or2n1b	G	C	17: 38,460,296 (GRCm39)	K272N	probably damaging	Het
Or4c111	T	C	2: 88,843,488 (GRCm39)	I307V	probably benign	Het
Or8b12i	G	T	9: 20,082,410 (GRCm39)	S152R	probably damaging	Het
Or8k28	T	C	2: 86,285,859 (GRCm39)	Y252C	probably damaging	Het
Or8s10	A	T	15: 98,335,560 (GRCm39)	D70V	probably damaging	Het
Pcdhb2	T	A	18: 37,429,168 (GRCm39)	N23K	probably damaging	Het
Pdap1	A	G	5: 145,073,691 (GRCm39)		probably benign	Het
Pds5b	A	G	5: 150,670,197 (GRCm39)	E395G	probably damaging	Het
Pex1	C	A	5: 3,668,880 (GRCm39)	R624S	probably benign	Het
Pitrm1	G	A	13: 6,608,261 (GRCm39)	V329I	probably benign	Het
Pop1	G	A	15: 34,515,970 (GRCm39)		probably benign	Het
Prkaa1	A	G	15: 5,190,082 (GRCm39)		probably null	Het
Slc38a6	G	T	12: 73,335,298 (GRCm39)		probably null	Het
Slc5a9	T	A	4: 111,750,384 (GRCm39)	Y158F	probably damaging	Het
Spata3	T	A	1: 85,954,175 (GRCm39)	V114E	probably damaging	Het
Tbcb	T	A	7: 29,931,019 (GRCm39)	I34F	possibly damaging	Het
Tek	T	A	4: 94,751,903 (GRCm39)	Y1014*	probably null	Het
Togaram1	G	T	12: 65,014,681 (GRCm39)	C644F	probably damaging	Het
Trim56	A	C	5: 137,142,918 (GRCm39)	D199E	possibly damaging	Het
Tssk3	A	T	4: 129,383,110 (GRCm39)	D187E	probably benign	Het
Ttn	G	A	2: 76,727,147 (GRCm39)		probably benign	Het
Twf2	G	A	9: 106,090,025 (GRCm39)	R126Q	probably benign	Het
Ugt1a10	T	C	1: 87,983,838 (GRCm39)	M212T	probably benign	Het
Vmn1r177	A	T	7: 23,565,772 (GRCm39)	F35I	possibly damaging	Het
Vmn1r44	T	A	6: 89,870,915 (GRCm39)	H77Q	possibly damaging	Het
Zfp1004	T	A	2: 150,034,143 (GRCm39)	Y186N	probably damaging	Het
Zfp524	G	A	7: 5,021,347 (GRCm39)	V292I	probably benign	Het
Zfp788	T	G	7: 41,297,018 (GRCm39)	I56S	probably benign	Het

Other mutations in H2-T5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00157:H2-T5	APN	17	36,476,246 (GRCm39)	critical splice donor site	probably null
IGL00534:H2-T5	APN	17	36,479,021 (GRCm39)	missense	probably damaging	1.00
IGL02312:H2-T5	APN	17	36,476,299 (GRCm39)	missense	probably benign	0.01
IGL03346:H2-T5	APN	17	36,479,001 (GRCm39)	missense	probably damaging	1.00
H8441:H2-T5	UTSW	17	36,478,874 (GRCm39)	missense	possibly damaging	0.84
R0005:H2-T5	UTSW	17	36,473,084 (GRCm39)	unclassified	probably benign
R0078:H2-T5	UTSW	17	36,476,353 (GRCm39)	missense	possibly damaging	0.95
R0211:H2-T5	UTSW	17	36,478,899 (GRCm39)	missense	probably damaging	1.00
R0211:H2-T5	UTSW	17	36,478,899 (GRCm39)	missense	probably damaging	1.00
R0233:H2-T5	UTSW	17	36,478,361 (GRCm39)	missense	probably benign	0.42
R0233:H2-T5	UTSW	17	36,478,361 (GRCm39)	missense	probably benign	0.42
R0553:H2-T5	UTSW	17	36,478,949 (GRCm39)	missense	probably damaging	1.00
R0670:H2-T5	UTSW	17	36,478,990 (GRCm39)	missense	possibly damaging	0.74
R1718:H2-T5	UTSW	17	36,472,676 (GRCm39)	unclassified	probably benign
R1937:H2-T5	UTSW	17	36,478,899 (GRCm39)	missense	probably damaging	1.00
R2571:H2-T5	UTSW	17	36,478,553 (GRCm39)	missense	possibly damaging	0.66
R4393:H2-T5	UTSW	17	36,472,861 (GRCm39)	unclassified	probably benign
R4396:H2-T5	UTSW	17	36,472,861 (GRCm39)	unclassified	probably benign
R4409:H2-T5	UTSW	17	36,476,742 (GRCm39)	missense	possibly damaging	0.53
R4505:H2-T5	UTSW	17	36,472,372 (GRCm39)	unclassified	probably benign
R4506:H2-T5	UTSW	17	36,472,372 (GRCm39)	unclassified	probably benign
R4507:H2-T5	UTSW	17	36,472,372 (GRCm39)	unclassified	probably benign
R4684:H2-T5	UTSW	17	36,476,750 (GRCm39)	missense	possibly damaging	0.90
R4740:H2-T5	UTSW	17	36,478,448 (GRCm39)	missense	probably damaging	1.00
R5087:H2-T5	UTSW	17	36,476,308 (GRCm39)	nonsense	probably null
R5103:H2-T5	UTSW	17	36,472,577 (GRCm39)	unclassified	probably benign
R5275:H2-T5	UTSW	17	36,472,567 (GRCm39)	splice site	probably null
R5425:H2-T5	UTSW	17	36,479,377 (GRCm39)	missense	probably damaging	1.00
R6155:H2-T5	UTSW	17	36,478,399 (GRCm39)	missense	possibly damaging	0.93
R6727:H2-T5	UTSW	17	36,476,622 (GRCm39)	missense	probably damaging	1.00
R6852:H2-T5	UTSW	17	36,478,965 (GRCm39)	missense	possibly damaging	0.52
R7985:H2-T5	UTSW	17	36,478,445 (GRCm39)	missense	probably damaging	1.00
R8316:H2-T5	UTSW	17	36,479,154 (GRCm39)	missense	unknown
R8872:H2-T5	UTSW	17	36,476,293 (GRCm39)	missense	probably benign	0.00
R9046:H2-T5	UTSW	17	36,476,035 (GRCm39)	critical splice donor site	probably null
R9296:H2-T5	UTSW	17	36,479,169 (GRCm39)	missense	unknown
Z1177:H2-T5	UTSW	17	36,476,604 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGGAAACTCTTCTCATGGCC -3'
(R):5'- TTCCTGATTGCCAGAAGGGG -3'

Sequencing Primer
(F):5'- GGAAACTCTTCTCATGGCCCTCTG -3'
(R):5'- AAAGGCTTCTGGGGGCATG -3'

Posted On

2015-09-24