Mutagenetix > Incidental Mutation

Incidental Mutation 'R4583:Pcdhb15'

343880

Institutional Source

Beutler Lab

Gene Symbol

Pcdhb15

Ensembl Gene

ENSMUSG00000047033

Gene Name

protocadherin beta 15

Synonyms

PcdhbO, Pcdhb7

MMRRC Submission

041804-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.062) question?

Stock #

R4583 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

37473540-37476340 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 37475575 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 620 (H620L)

Ref Sequence

ENSEMBL: ENSMUSP00000059598 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050034] [ENSMUST00000051442] [ENSMUST00000115661] [ENSMUST00000194544]

AlphaFold

Q91Y04

Predicted Effect

possibly damaging
Transcript: ENSMUST00000050034
AA Change: H620L

PolyPhen 2 Score 0.910 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000059598
Gene: ENSMUSG00000047033
AA Change: H620L

Domain	Start	End	E-Value	Type
Pfam:Cadherin_2	30	112	2.6e-33	PFAM
CA	155	240	7.79e-22	SMART
CA	264	345	4.37e-25	SMART
CA	368	449	4.4e-21	SMART
CA	473	559	7.38e-23	SMART
CA	589	670	4.48e-13	SMART
Pfam:Cadherin_C_2	686	770	5.3e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000051442

SMART Domains

Protein: ENSMUSP00000056347
Gene: ENSMUSG00000047910

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
CA	46	132	7.7e-1	SMART
CA	156	241	1.93e-17	SMART
CA	265	346	4.2e-27	SMART
CA	369	450	1.08e-24	SMART
CA	474	560	3.31e-25	SMART
CA	590	671	2.87e-11	SMART
Pfam:Cadherin_C_2	687	770	4.1e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115661

SMART Domains

Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

Domain	Start	End	E-Value	Type
CA	20	131	5.3e-2	SMART
CA	155	240	1.51e-19	SMART
CA	264	348	7.6e-25	SMART
CA	372	453	1.42e-24	SMART
CA	477	563	1.42e-24	SMART
CA	594	674	4.12e-12	SMART
low complexity region	706	721	N/A	INTRINSIC
Pfam:Cadherin_tail	796	930	3.9e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193984

Predicted Effect

probably benign
Transcript: ENSMUST00000194544

SMART Domains

Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

Domain	Start	End	E-Value	Type
Blast:CA	18	66	5e-20	BLAST

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. The transcript for this particular family member uses more than one polyadenylation site. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 119 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310022A10Rik	T	C	7: 27,574,592	L86P	unknown	Het
Aimp1	C	T	3: 132,677,047	E23K	probably damaging	Het
Ap2b1	A	T	11: 83,397,779	N884I	probably benign	Het
Apoe	G	T	7: 19,697,498	Q65K	possibly damaging	Het
Arhgef1	T	A	7: 24,912,571	D93E	probably benign	Het
Arhgef12	G	T	9: 42,977,662	T1085K	probably damaging	Het
Arid5a	T	C	1: 36,317,664		probably null	Het
Atp9a	A	T	2: 168,689,360		probably null	Het
Baz1a	T	C	12: 54,922,540	I635V	probably damaging	Het
Bbs10	A	G	10: 111,301,134	K703E	probably benign	Het
Cckar	T	A	5: 53,699,782	M429L	probably benign	Het
Ccl3	A	T	11: 83,648,338	L65Q	probably benign	Het
Ccr3	A	G	9: 124,029,440	T271A	probably benign	Het
Cd8b1	T	A	6: 71,326,097	I52N	probably damaging	Het
Cdh15	G	A	8: 122,865,028	E551K	probably damaging	Het
Cdh17	A	G	4: 11,810,466	K719R	probably benign	Het
Cfap43	T	C	19: 47,837,216	R38G	probably null	Het
Chd6	T	C	2: 161,014,194	E715G	probably damaging	Het
Cldn34b2	T	A	X: 155,125,629	R68*	probably null	Het
Col19a1	T	G	1: 24,561,329	D44A	unknown	Het
Colgalt2	C	T	1: 152,506,876	S493F	probably damaging	Het
Cr1l	T	C	1: 195,129,831	I99M	probably damaging	Het
Crybg1	T	C	10: 43,997,620	E1164G	probably damaging	Het
Cym	G	T	3: 107,211,402	D367E	probably damaging	Het
Dennd2a	G	T	6: 39,522,842	T263K	probably damaging	Het
Dhx9	T	A	1: 153,460,303	M869L	probably damaging	Het
Dnm2	A	G	9: 21,504,446	H692R	probably damaging	Het
Ern1	A	T	11: 106,407,205	S697T	probably damaging	Het
F12	G	A	13: 55,421,130	T273I	probably benign	Het
Fam151b	A	T	13: 92,468,109	L124Q	probably damaging	Het
Fancg	A	G	4: 43,002,991	V622A	probably benign	Het
Fbxo2	T	A	4: 148,164,899	N159K	possibly damaging	Het
Fgd2	C	A	17: 29,367,078	T212K	possibly damaging	Het
Fhl3	T	A	4: 124,707,549	D178E	probably benign	Het
Filip1	G	T	9: 79,815,809	A1176D	possibly damaging	Het
Fndc1	T	C	17: 7,739,249	Y1722C	probably damaging	Het
Frem3	T	C	8: 80,613,514	V812A	probably benign	Het
Fsip2	A	G	2: 82,978,673	I1779V	probably benign	Het
Gli2	C	T	1: 118,842,068	V585I	probably benign	Het
Gm15056	C	G	8: 20,900,681	S80T	probably benign	Het
Gm4951	T	C	18: 60,246,080	I229T	possibly damaging	Het
Gm5145	A	G	17: 20,570,453	E31G	probably benign	Het
Gmfg	A	G	7: 28,445,944	Y71C	probably damaging	Het
Grk1	A	G	8: 13,409,322	E291G	probably damaging	Het
Gtpbp1	A	G	15: 79,715,951	E393G	possibly damaging	Het
Gtpbp2	A	G	17: 46,161,145	D2G	probably damaging	Het
Hc	A	T	2: 35,028,177	V698E	probably benign	Het
Helz	G	A	11: 107,646,069	R249H	probably damaging	Het
Hmcn2	A	G	2: 31,413,265	I2973V	possibly damaging	Het
Hnrnpa3	A	G	2: 75,663,606	R286G	probably benign	Het
Hus1b	A	T	13: 30,947,518	W53R	probably damaging	Het
Hydin	C	T	8: 110,595,225	T4503I	probably benign	Het
Ighmbp2	G	C	19: 3,265,324	P699A	probably benign	Het
Igkv1-122	A	T	6: 68,017,458	Y110F	probably benign	Het
Igkv8-28	T	C	6: 70,143,620	Y113C	probably damaging	Het
Il16	A	G	7: 83,682,899	S158P	probably damaging	Het
Kalrn	T	A	16: 34,235,267	H876L	probably damaging	Het
Kdm5d	T	A	Y: 914,134	L357H	probably damaging	Het
Krt78	T	C	15: 101,946,620	T919A	possibly damaging	Het
L3mbtl2	T	C	15: 81,684,906	C594R	probably damaging	Het
Lcorl	A	T	5: 45,733,589	L474*	probably null	Het
Lgals3	A	T	14: 47,381,687		probably null	Het
Lnx1	C	T	5: 74,610,796	V350I	probably benign	Het
Lpcat3	T	G	6: 124,703,323	W429G	possibly damaging	Het
Lrp1	T	C	10: 127,541,372	T4149A	probably benign	Het
Memo1	G	A	17: 74,258,461	Q36*	probably null	Het
Micalcl	A	G	7: 112,412,947	N668S	probably benign	Het
Ms4a10	A	T	19: 10,968,189	I76N	possibly damaging	Het
Mthfr	T	G	4: 148,051,872	L362V	possibly damaging	Het
Myh3	T	A	11: 67,096,453	Y1376*	probably null	Het
Mymk	C	A	2: 27,062,280	V192F	probably benign	Het
Myo1c	A	G	11: 75,671,862	D966G	possibly damaging	Het
Ncam2	A	G	16: 81,517,557	N474D	probably damaging	Het
Nmnat1	T	C	4: 149,469,151	N168S	possibly damaging	Het
Nmur1	C	T	1: 86,386,645	V323M	possibly damaging	Het
Npr2	C	A	4: 43,633,522		probably null	Het
Nsd3	T	A	8: 25,710,676	M1265K	probably benign	Het
Olfr1206	G	T	2: 88,865,494	M296I	probably benign	Het
Olfr1212	T	A	2: 88,959,212	F249I	probably damaging	Het
Olfr1462	T	A	19: 13,190,698	F10L	probably damaging	Het
Olfr152	T	C	2: 87,783,221	V227A	possibly damaging	Het
Olfr155	A	G	4: 43,855,262	T318A	probably benign	Het
Olfr345	A	C	2: 36,640,614	T192P	probably damaging	Het
Olfr394	T	C	11: 73,887,803	T190A	probably damaging	Het
Olfr812	T	C	10: 129,842,475	D189G	probably damaging	Het
Otub1	G	A	19: 7,204,436	A25V	possibly damaging	Het
Paqr3	T	A	5: 97,108,210	R102*	probably null	Het
Patl2	A	G	2: 122,126,745	S103P	probably benign	Het
Pdgfc	A	T	3: 81,141,528	D81V	possibly damaging	Het
Pdia2	T	C	17: 26,196,502	D447G	probably damaging	Het
Pold1	C	A	7: 44,538,913	A514S	probably damaging	Het
Pomgnt1	C	T	4: 116,158,494	T552I	probably benign	Het
Ppl	T	C	16: 5,104,536	E294G	probably benign	Het
Pramef8	A	G	4: 143,416,754	Y30C	probably damaging	Het
Prkcb	A	G	7: 122,457,224	S100G	probably benign	Het
Psg16	T	G	7: 17,095,172	I227S	probably benign	Het
Rbbp6	AAAGAAGAAGAAGAAGAAG	AAAGAAGAAGAAGAAG	7: 123,001,952		probably benign	Het
Reck	T	C	4: 43,931,062		probably null	Het
Rrbp1	C	T	2: 143,988,751	G499S	probably benign	Het
Sema6d	G	T	2: 124,664,162	R630L	probably damaging	Het
Slc29a1	A	G	17: 45,589,956	V94A	possibly damaging	Het
Slc35a1	T	A	4: 34,664,146	Q324L	probably benign	Het
Slc35c1	A	T	2: 92,458,921	L80Q	probably damaging	Het
Slc7a10	G	T	7: 35,197,952		probably null	Het
Srrm2	C	T	17: 23,819,619		probably benign	Het
Stk38	T	G	17: 28,982,156	D182A	probably damaging	Het
Tas2r104	C	T	6: 131,685,435	G104S	probably benign	Het
Tmem121b	T	C	6: 120,492,094	E554G	probably damaging	Het
Tor1aip2	A	G	1: 156,065,142	H398R	probably benign	Het
Tram2	C	T	1: 21,013,449	V83I	probably benign	Het
Ube3a	C	T	7: 59,286,063	T565I	probably damaging	Het
Ubr4	T	C	4: 139,380,853	V56A	possibly damaging	Het
Vmn1r128	T	C	7: 21,349,719	V116A	possibly damaging	Het
Vmn1r170	C	T	7: 23,606,662	T163I	probably benign	Het
Vmn2r75	T	A	7: 86,164,082	D504V	possibly damaging	Het
Vps36	G	A	8: 22,218,420	M363I	probably benign	Het
Wdsub1	A	G	2: 59,878,317	S71P	probably damaging	Het
Zdhhc12	A	G	2: 30,091,484	F189L	probably benign	Het
Zfp521	T	C	18: 13,844,330	M1009V	probably benign	Het

Other mutations in Pcdhb15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00530:Pcdhb15	APN	18	37475154	missense	probably damaging	1.00
IGL01536:Pcdhb15	APN	18	37474993	missense	probably benign	0.01
IGL01664:Pcdhb15	APN	18	37474261	missense	probably benign	0.35
IGL02001:Pcdhb15	APN	18	37474038	missense	probably benign	0.01
IGL02161:Pcdhb15	APN	18	37475502	missense	possibly damaging	0.78
IGL02205:Pcdhb15	APN	18	37473957	missense	probably damaging	0.99
IGL02748:Pcdhb15	APN	18	37475220	missense	probably damaging	0.98
IGL02828:Pcdhb15	APN	18	37473850	missense	probably damaging	0.97
IGL02974:Pcdhb15	APN	18	37475014	missense	probably damaging	1.00
IGL03119:Pcdhb15	APN	18	37475014	missense	probably damaging	1.00
IGL03136:Pcdhb15	APN	18	37475014	missense	probably damaging	1.00
IGL03150:Pcdhb15	APN	18	37475014	missense	probably damaging	1.00
PIT1430001:Pcdhb15	UTSW	18	37475671	missense	probably benign	0.15
R0266:Pcdhb15	UTSW	18	37475276	missense	probably damaging	1.00
R0288:Pcdhb15	UTSW	18	37475398	missense	probably damaging	1.00
R0399:Pcdhb15	UTSW	18	37474168	missense	possibly damaging	0.56
R0400:Pcdhb15	UTSW	18	37475895	missense	probably benign
R0554:Pcdhb15	UTSW	18	37474519	missense	probably damaging	1.00
R0637:Pcdhb15	UTSW	18	37475566	missense	probably damaging	1.00
R0714:Pcdhb15	UTSW	18	37474621	missense	probably damaging	0.98
R1118:Pcdhb15	UTSW	18	37473762	missense	probably benign	0.01
R1423:Pcdhb15	UTSW	18	37473922	missense	probably damaging	0.97
R1672:Pcdhb15	UTSW	18	37474660	missense	probably damaging	1.00
R1681:Pcdhb15	UTSW	18	37473813	missense	probably damaging	1.00
R1779:Pcdhb15	UTSW	18	37476031	missense	possibly damaging	0.95
R2206:Pcdhb15	UTSW	18	37475022	missense	probably benign	0.05
R2207:Pcdhb15	UTSW	18	37475022	missense	probably benign	0.05
R2274:Pcdhb15	UTSW	18	37475443	missense	probably damaging	1.00
R3406:Pcdhb15	UTSW	18	37475389	missense	probably benign	0.41
R3407:Pcdhb15	UTSW	18	37474389	missense	possibly damaging	0.80
R3417:Pcdhb15	UTSW	18	37475163	missense	probably damaging	1.00
R3752:Pcdhb15	UTSW	18	37473757	missense	probably damaging	1.00
R3773:Pcdhb15	UTSW	18	37475890	missense	probably benign	0.00
R4432:Pcdhb15	UTSW	18	37475512	missense	probably damaging	1.00
R4433:Pcdhb15	UTSW	18	37475512	missense	probably damaging	1.00
R4612:Pcdhb15	UTSW	18	37475595	missense	probably damaging	0.96
R4988:Pcdhb15	UTSW	18	37475802	missense	probably damaging	0.98
R5635:Pcdhb15	UTSW	18	37473770	nonsense	probably null
R5692:Pcdhb15	UTSW	18	37474449	missense	probably benign	0.01
R5742:Pcdhb15	UTSW	18	37474767	missense	probably damaging	0.99
R5913:Pcdhb15	UTSW	18	37474654	missense	probably benign	0.07
R6350:Pcdhb15	UTSW	18	37475361	missense	probably damaging	1.00
R6522:Pcdhb15	UTSW	18	37474261	missense	probably benign	0.35
R6676:Pcdhb15	UTSW	18	37474807	missense	possibly damaging	0.60
R6693:Pcdhb15	UTSW	18	37474341	missense	probably benign	0.01
R6905:Pcdhb15	UTSW	18	37474695	missense	possibly damaging	0.95
R7029:Pcdhb15	UTSW	18	37475568	missense	possibly damaging	0.85
R7335:Pcdhb15	UTSW	18	37474336	missense	probably damaging	1.00
R7529:Pcdhb15	UTSW	18	37474473	nonsense	probably null
R7718:Pcdhb15	UTSW	18	37475163	missense	probably damaging	1.00
R7782:Pcdhb15	UTSW	18	37474735	missense	possibly damaging	0.88
R7967:Pcdhb15	UTSW	18	37474849	missense	probably damaging	1.00
R8170:Pcdhb15	UTSW	18	37475584	missense	probably damaging	1.00
R8323:Pcdhb15	UTSW	18	37475662	missense	probably benign	0.18
R8725:Pcdhb15	UTSW	18	37475681	missense	probably damaging	0.99
R8820:Pcdhb15	UTSW	18	37473918	missense	probably benign	0.03
R9117:Pcdhb15	UTSW	18	37475037	missense	probably damaging	1.00
R9280:Pcdhb15	UTSW	18	37474741	missense	probably damaging	1.00
R9367:Pcdhb15	UTSW	18	37474918	missense	possibly damaging	0.95
R9424:Pcdhb15	UTSW	18	37474210	missense
R9432:Pcdhb15	UTSW	18	37475630	missense	probably benign	0.04
R9498:Pcdhb15	UTSW	18	37473837	nonsense	probably null
R9544:Pcdhb15	UTSW	18	37475895	missense	probably benign
X0062:Pcdhb15	UTSW	18	37476015	nonsense	probably null
X0063:Pcdhb15	UTSW	18	37475084	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ACAATGACAATGCGCCCTTC -3'
(R):5'- AGCTCATCATCTTCTTGTGCAG -3'

Sequencing Primer
(F):5'- TCGTGCTCTACCCGATGCAG -3'
(R):5'- CATCATCTTCTTGTGCAGGGTCG -3'

Posted On

2015-09-24