Mutagenetix > Incidental Mutation

Incidental Mutation 'R0103:Dhx58'

34493

Institutional Source

Beutler Lab

Gene Symbol

Dhx58

Ensembl Gene

ENSMUSG00000017830

Gene Name

DExH-box helicase 58

Synonyms

D11Lgp2e, B430001I08Rik, LPG2

MMRRC Submission

038389-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.201) question?

Stock #

R0103 (G1)

Quality Score

225

Status

Validated (trace)

Chromosome

Chromosomal Location

100585710-100595097 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 100586096 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 642 (T642A)

Ref Sequence

ENSEMBL: ENSMUSP00000017974 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017974] [ENSMUST00000153494]

AlphaFold

Q99J87

Predicted Effect

probably damaging
Transcript: ENSMUST00000017974
AA Change: T642A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000017974
Gene: ENSMUSG00000017830
AA Change: T642A

Domain	Start	End	E-Value	Type
DEXDc	2	207	2.86e-22	SMART
HELICc	387	475	3.85e-14	SMART
Blast:HELICc	497	543	4e-12	BLAST
Pfam:RIG-I_C-RD	552	667	1.5e-37	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137154

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140543

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149869

Predicted Effect

probably benign
Transcript: ENSMUST00000153494

SMART Domains

Protein: ENSMUSP00000115268
Gene: ENSMUSG00000014198

Domain	Start	End	E-Value	Type
Pfam:zf-met	42	67	6.4e-8	PFAM
low complexity region	79	102	N/A	INTRINSIC

Meta Mutation Damage Score

0.1687

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.0%
20x: 94.8%

Validation Efficiency

99% (84/85)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased susceptibility to EMCV infection and decreased susceptibility to VSV infection. Mice homozygous for a different knock-out allele exhibit increased susceptibility to WNV infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	C	11: 9,223,951 (GRCm39)	R443S	probably damaging	Het
Anapc1	T	C	2: 128,522,372 (GRCm39)		probably benign	Het
Aqr	T	A	2: 113,979,497 (GRCm39)	I313F	probably damaging	Het
Arfgap3	A	T	15: 83,206,922 (GRCm39)		probably benign	Het
Asah2	G	T	19: 31,996,377 (GRCm39)	H374N	probably benign	Het
Avl9	G	T	6: 56,713,468 (GRCm39)	R242L	probably benign	Het
Ccdc106	C	A	7: 5,060,544 (GRCm39)	Q35K	probably benign	Het
Ccm2l	G	T	2: 152,909,839 (GRCm39)	E64*	probably null	Het
Cep85l	A	T	10: 53,154,270 (GRCm39)	D776E	possibly damaging	Het
Cfap52	T	A	11: 67,815,951 (GRCm39)	I611F	possibly damaging	Het
Cldn22	C	T	8: 48,277,589 (GRCm39)	T9M	probably benign	Het
Coa7	T	C	4: 108,195,338 (GRCm39)	L89P	possibly damaging	Het
Cox7a2l	A	T	17: 83,821,701 (GRCm39)	Y2N	probably damaging	Het
Ctns	A	C	11: 73,076,137 (GRCm39)	I299M	probably damaging	Het
Cyp27a1	A	C	1: 74,775,074 (GRCm39)	E301A	probably benign	Het
Cyp2b13	A	T	7: 25,788,135 (GRCm39)	K421M	probably damaging	Het
Cyp4f40	G	T	17: 32,895,282 (GRCm39)	C468F	probably damaging	Het
Cyp4f40	C	A	17: 32,895,283 (GRCm39)	C468*	probably null	Het
Dcun1d5	G	A	9: 7,188,788 (GRCm39)	C74Y	probably damaging	Het
Dennd4c	A	G	4: 86,730,683 (GRCm39)	Y860C	probably benign	Het
Dgkz	T	C	2: 91,764,550 (GRCm39)	T1028A	probably benign	Het
Dlg4	A	G	11: 69,922,019 (GRCm39)	Y87C	probably damaging	Het
Dnah6	C	T	6: 73,069,155 (GRCm39)	E2511K	probably damaging	Het
Entpd5	C	A	12: 84,443,717 (GRCm39)	E9*	probably null	Het
Fbln2	A	C	6: 91,248,532 (GRCm39)	I1066L	probably benign	Het
Fhl2	C	T	1: 43,192,381 (GRCm39)	R4H	probably benign	Het
Frmpd1	T	A	4: 45,229,884 (GRCm39)	I17K	probably damaging	Het
Galnt2l	A	G	8: 122,996,472 (GRCm39)		probably benign	Het
Gbp7	T	A	3: 142,252,299 (GRCm39)	N627K	probably benign	Het
Gnptab	A	G	10: 88,265,381 (GRCm39)	Y331C	probably damaging	Het
Hdac4	T	C	1: 91,903,366 (GRCm39)	E521G	possibly damaging	Het
Hibadh	T	A	6: 52,534,862 (GRCm39)	M173L	probably benign	Het
Iba57	C	T	11: 59,054,439 (GRCm39)	A27T	probably benign	Het
Itga1	T	C	13: 115,152,790 (GRCm39)	I211V	probably benign	Het
Keg1	A	T	19: 12,696,280 (GRCm39)	I155F	possibly damaging	Het
Krt84	T	C	15: 101,438,671 (GRCm39)	E272G	probably damaging	Het
Lrp2	C	A	2: 69,307,384 (GRCm39)	V2892L	probably benign	Het
Ltb	A	G	17: 35,414,016 (GRCm39)		probably benign	Het
Masp1	G	A	16: 23,276,768 (GRCm39)	P579L	probably damaging	Het
Mtor	T	A	4: 148,618,359 (GRCm39)	M1724K	probably benign	Het
Myo3a	T	G	2: 22,436,360 (GRCm39)		probably benign	Het
Myo9b	C	T	8: 71,776,493 (GRCm39)		probably benign	Het
Ncor1	G	T	11: 62,233,871 (GRCm39)	Q444K	possibly damaging	Het
Nek7	A	T	1: 138,471,980 (GRCm39)	C53*	probably null	Het
Obscn	G	T	11: 58,953,522 (GRCm39)	Y4044*	probably null	Het
Or5b105	G	A	19: 13,080,642 (GRCm39)	R3C	possibly damaging	Het
Pcdh15	A	T	10: 74,046,257 (GRCm39)	D178V	probably damaging	Het
Pcsk6	T	C	7: 65,578,845 (GRCm39)		probably benign	Het
Phxr4	T	C	9: 13,343,087 (GRCm39)		probably benign	Het
Pkhd1	T	A	1: 20,593,583 (GRCm39)	D1510V	probably benign	Het
Pkhd1l1	T	C	15: 44,460,537 (GRCm39)	C4249R	probably benign	Het
Plxnb2	A	G	15: 89,045,972 (GRCm39)	Y968H	possibly damaging	Het
Prpf39	T	C	12: 65,102,057 (GRCm39)	V378A	possibly damaging	Het
Psd2	A	G	18: 36,137,770 (GRCm39)	N455S	probably damaging	Het
Ptch2	C	A	4: 116,966,622 (GRCm39)		probably benign	Het
Rab4b	A	G	7: 26,873,927 (GRCm39)	I117T	probably benign	Het
Rad9b	A	T	5: 122,469,590 (GRCm39)	V348E	probably damaging	Het
Rcor1	T	C	12: 111,076,212 (GRCm39)		probably benign	Het
Rhoc	A	T	3: 104,699,307 (GRCm39)	E32V	possibly damaging	Het
Rnf40	T	G	7: 127,199,743 (GRCm39)	V925G	probably damaging	Het
Rptor	G	T	11: 119,775,793 (GRCm39)	R988L	probably benign	Het
Slc25a32	A	T	15: 38,963,292 (GRCm39)	Y176*	probably null	Het
Slc7a1	T	A	5: 148,289,236 (GRCm39)	K4*	probably null	Het
Ss18	A	C	18: 14,812,478 (GRCm39)	Y38D	probably damaging	Het
Syt4	T	A	18: 31,580,273 (GRCm39)		probably benign	Het
Taar4	A	T	10: 23,837,304 (GRCm39)	N305Y	probably damaging	Het
Taar7b	A	T	10: 23,876,192 (GRCm39)	Y119F	probably benign	Het
Tcaf1	G	T	6: 42,663,324 (GRCm39)	D185E	probably benign	Het
Tmem138	T	C	19: 10,552,316 (GRCm39)	N62S	possibly damaging	Het
Tnfaip2	C	T	12: 111,412,244 (GRCm39)	T215M	probably benign	Het
Tnfrsf21	C	T	17: 43,349,104 (GRCm39)	H239Y	probably benign	Het
Tnfrsf25	C	T	4: 152,201,405 (GRCm39)	P65S	possibly damaging	Het
Trp53bp1	A	T	2: 121,067,240 (GRCm39)	S495R	possibly damaging	Het
Trpv3	T	C	11: 73,184,805 (GRCm39)	F597S	probably damaging	Het
Tsc22d4	A	C	5: 137,745,378 (GRCm39)	M1L	possibly damaging	Het
Ttc39a	A	G	4: 109,278,650 (GRCm39)		probably null	Het
Ttn	T	G	2: 76,591,570 (GRCm39)	H21033P	probably damaging	Het
Ugt2a3	A	G	5: 87,484,577 (GRCm39)	V149A	possibly damaging	Het
Ush2a	T	G	1: 188,051,267 (GRCm39)	I251R	possibly damaging	Het
Vamp4	T	C	1: 162,417,108 (GRCm39)	C114R	possibly damaging	Het
Wdr33	T	C	18: 31,966,388 (GRCm39)	V135A	probably damaging	Het
Zc3h13	T	A	14: 75,567,908 (GRCm39)	V1067E	probably damaging	Het
Zcwpw1	G	A	5: 137,808,375 (GRCm39)	W274*	probably null	Het
Zfp219	T	A	14: 52,244,163 (GRCm39)	H627L	probably damaging	Het

Other mutations in Dhx58

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01395:Dhx58	APN	11	100,594,752 (GRCm39)	missense	probably damaging	0.97
IGL02476:Dhx58	APN	11	100,593,090 (GRCm39)	missense	probably benign	0.00
R0103:Dhx58	UTSW	11	100,586,096 (GRCm39)	missense	probably damaging	1.00
R0137:Dhx58	UTSW	11	100,587,823 (GRCm39)	missense	probably damaging	0.99
R0164:Dhx58	UTSW	11	100,586,150 (GRCm39)	missense	probably benign	0.42
R0164:Dhx58	UTSW	11	100,586,150 (GRCm39)	missense	probably benign	0.42
R0369:Dhx58	UTSW	11	100,592,374 (GRCm39)	critical splice donor site	probably null
R0390:Dhx58	UTSW	11	100,590,090 (GRCm39)	missense	probably damaging	1.00
R0606:Dhx58	UTSW	11	100,593,077 (GRCm39)	missense	probably benign	0.00
R1710:Dhx58	UTSW	11	100,594,400 (GRCm39)	missense	probably benign	0.20
R1816:Dhx58	UTSW	11	100,593,978 (GRCm39)	missense	probably damaging	0.98
R1993:Dhx58	UTSW	11	100,594,316 (GRCm39)	splice site	probably null
R2281:Dhx58	UTSW	11	100,588,980 (GRCm39)	critical splice donor site	probably null
R3176:Dhx58	UTSW	11	100,587,805 (GRCm39)	missense	probably damaging	1.00
R3276:Dhx58	UTSW	11	100,587,805 (GRCm39)	missense	probably damaging	1.00
R4651:Dhx58	UTSW	11	100,592,185 (GRCm39)	missense	probably damaging	1.00
R4652:Dhx58	UTSW	11	100,592,185 (GRCm39)	missense	probably damaging	1.00
R4716:Dhx58	UTSW	11	100,587,797 (GRCm39)	splice site	probably null
R5030:Dhx58	UTSW	11	100,586,963 (GRCm39)	missense	probably damaging	1.00
R5082:Dhx58	UTSW	11	100,587,802 (GRCm39)	missense	probably benign	0.29
R5098:Dhx58	UTSW	11	100,585,999 (GRCm39)	missense	probably benign
R5394:Dhx58	UTSW	11	100,589,034 (GRCm39)	missense	probably benign	0.00
R5397:Dhx58	UTSW	11	100,594,746 (GRCm39)	missense	probably damaging	1.00
R5787:Dhx58	UTSW	11	100,592,145 (GRCm39)	missense	possibly damaging	0.91
R5975:Dhx58	UTSW	11	100,593,035 (GRCm39)	missense	probably damaging	0.98
R6310:Dhx58	UTSW	11	100,590,193 (GRCm39)	missense	probably benign	0.01
R6935:Dhx58	UTSW	11	100,589,232 (GRCm39)	splice site	probably null
R7311:Dhx58	UTSW	11	100,588,997 (GRCm39)	missense	probably benign
R7908:Dhx58	UTSW	11	100,586,130 (GRCm39)	missense	probably damaging	0.99
R8317:Dhx58	UTSW	11	100,594,388 (GRCm39)	missense	probably damaging	1.00
R8821:Dhx58	UTSW	11	100,594,806 (GRCm39)	missense	probably damaging	1.00
R8831:Dhx58	UTSW	11	100,594,806 (GRCm39)	missense	probably damaging	1.00
R9717:Dhx58	UTSW	11	100,592,133 (GRCm39)	missense	probably benign	0.02

Predicted Primers

PCR Primer
(F):5'- TGCGTTCATCTCTTGACTAGGAGGA -3'
(R):5'- GCATGATGGCCTCTGGTGGTAGATA -3'

Sequencing Primer
(F):5'- CATGGCATAATAATTCTCCTGCG -3'
(R):5'- CTCTGGTGGTAGATATGGGGC -3'

Posted On

2013-05-09