Mutagenetix > Incidental Mutation

Incidental Mutation 'R4598:Usp29'

345353

Institutional Source

Beutler Lab

Gene Symbol

Usp29

Ensembl Gene

ENSMUSG00000051527

Gene Name

ubiquitin specific peptidase 29

Synonyms

Ocat

MMRRC Submission

041814-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4598 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

6733577-6970218 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 6965479 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 441 (T441A)

Ref Sequence

ENSEMBL: ENSMUSP00000143769 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054055] [ENSMUST00000197117] [ENSMUST00000198068] [ENSMUST00000200535]

AlphaFold

Q9ES63

Predicted Effect

probably benign
Transcript: ENSMUST00000054055
AA Change: T441A

PolyPhen 2 Score 0.061 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000062349
Gene: ENSMUSG00000051527
AA Change: T441A

Domain	Start	End	E-Value	Type
Pfam:UCH_N	1	107	6.1e-37	PFAM
low complexity region	162	179	N/A	INTRINSIC
low complexity region	200	214	N/A	INTRINSIC
Pfam:UCH	288	823	6.1e-53	PFAM
Pfam:UCH_1	289	615	2.3e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000197117

SMART Domains

Protein: ENSMUSP00000143283
Gene: ENSMUSG00000051527

Domain	Start	End	E-Value	Type
PDB:3U12\|B	11	73	3e-7	PDB
low complexity region	82	95	N/A	INTRINSIC
low complexity region	169	186	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000198068
AA Change: T441A

PolyPhen 2 Score 0.061 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000143267
Gene: ENSMUSG00000051527
AA Change: T441A

Domain	Start	End	E-Value	Type
PDB:3U12\|B	11	123	3e-6	PDB
low complexity region	169	186	N/A	INTRINSIC
low complexity region	207	221	N/A	INTRINSIC
Pfam:UCH	295	830	7.9e-52	PFAM
Pfam:UCH_1	296	626	9.6e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000200535
AA Change: T441A

PolyPhen 2 Score 0.061 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000143769
Gene: ENSMUSG00000051527
AA Change: T441A

Domain	Start	End	E-Value	Type
Pfam:UCH_N	8	114	8.3e-34	PFAM
low complexity region	169	186	N/A	INTRINSIC
low complexity region	207	221	N/A	INTRINSIC
Pfam:UCH	295	830	2.8e-51	PFAM
Pfam:UCH_1	296	622	1.1e-14	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203365

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204486

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A830018L16Rik	G	A	1: 11,818,188 (GRCm39)		probably null	Het
Abca14	T	C	7: 119,854,626 (GRCm39)	V930A	probably benign	Het
Abcb7	A	C	X: 103,366,988 (GRCm39)	D135E	probably benign	Het
Ace	T	A	11: 105,872,585 (GRCm39)		probably null	Het
Acnat1	T	C	4: 49,450,781 (GRCm39)	D110G	probably benign	Het
Ak9	C	T	10: 41,259,907 (GRCm39)	P862S	probably damaging	Het
Atp1a3	A	G	7: 24,678,766 (GRCm39)	S972P	probably damaging	Het
Bmf	C	A	2: 118,379,609 (GRCm39)	A56S	probably benign	Het
C6	T	C	15: 4,792,852 (GRCm39)	L319P	possibly damaging	Het
Cab39	A	G	1: 85,776,050 (GRCm39)	Y249C	probably damaging	Het
Cdc14b	T	C	13: 64,395,088 (GRCm39)	T69A	probably benign	Het
Cep162	A	G	9: 87,085,848 (GRCm39)	Y1159H	possibly damaging	Het
Chrna7	A	G	7: 62,753,538 (GRCm39)	M327T	probably damaging	Het
Clca3a2	A	T	3: 144,511,444 (GRCm39)	N41K	probably damaging	Het
Clock	T	C	5: 76,383,657 (GRCm39)	M499V	probably benign	Het
Col5a3	A	G	9: 20,685,855 (GRCm39)		probably null	Het
Coq6	T	C	12: 84,408,913 (GRCm39)	V30A	probably benign	Het
Cyp3a57	A	G	5: 145,327,227 (GRCm39)	I473V	probably benign	Het
D430041D05Rik	A	T	2: 104,038,528 (GRCm39)	V1547D	probably damaging	Het
Dhx9	TCC	TC	1: 153,342,797 (GRCm39)		probably null	Het
Dock2	T	A	11: 34,189,536 (GRCm39)	Y1545F	probably damaging	Het
Eif4e3	T	A	6: 99,617,671 (GRCm39)	I67L	probably benign	Het
Epor	A	G	9: 21,873,155 (GRCm39)	S86P	probably benign	Het
Esp31	T	A	17: 38,952,012 (GRCm39)		probably null	Het
Esrp2	A	G	8: 106,859,343 (GRCm39)	M498T	probably damaging	Het
F5	T	C	1: 164,032,366 (GRCm39)	I1771T	probably benign	Het
Fancd2	C	A	6: 113,562,438 (GRCm39)	H1259Q	probably benign	Het
Gale	C	A	4: 135,695,148 (GRCm39)	S341*	probably null	Het
Ints12	T	A	3: 132,804,214 (GRCm39)	I67N	probably benign	Het
Kat2b	A	G	17: 53,977,826 (GRCm39)	Y791C	probably benign	Het
Kazn	A	G	4: 141,937,403 (GRCm39)	V108A	possibly damaging	Het
Kcnma1	T	C	14: 23,853,228 (GRCm39)	T109A	probably damaging	Het
Med13	T	C	11: 86,169,392 (GRCm39)	T1955A	probably damaging	Het
Megf10	G	A	18: 57,322,675 (GRCm39)		probably null	Het
Megf10	A	T	18: 57,420,884 (GRCm39)	S841C	probably damaging	Het
Mep1a	A	G	17: 43,802,469 (GRCm39)		probably null	Het
Mrap2	A	T	9: 87,064,842 (GRCm39)	E194D	probably damaging	Het
Msh2	A	G	17: 88,016,006 (GRCm39)	K546R	probably damaging	Het
Ndc80	T	C	17: 71,828,063 (GRCm39)	D88G	probably damaging	Het
Nrip1	A	G	16: 76,089,968 (GRCm39)	F530L	probably damaging	Het
Or2y10	T	C	11: 49,455,545 (GRCm39)	S266P	probably damaging	Het
Or52e7	A	C	7: 104,685,280 (GRCm39)	I292L	probably benign	Het
Or6c216	T	C	10: 129,678,864 (GRCm39)	T16A	possibly damaging	Het
Or9i16	A	T	19: 13,865,381 (GRCm39)	H64Q	probably damaging	Het
Oxtr	C	T	6: 112,466,713 (GRCm39)	G16R	probably benign	Het
Pdgfrb	A	T	18: 61,201,829 (GRCm39)	K464N	probably benign	Het
Pja2	A	T	17: 64,620,025 (GRCm39)	M1K	probably null	Het
Pkhd1	A	T	1: 20,573,280 (GRCm39)	N1875K	probably damaging	Het
Pogz	T	C	3: 94,787,491 (GRCm39)	S1360P	possibly damaging	Het
Proc	A	T	18: 32,256,512 (GRCm39)	L385Q	probably damaging	Het
Ptprm	A	G	17: 67,402,492 (GRCm39)	I132T	probably benign	Het
Rpgr	A	G	X: 10,062,255 (GRCm39)	S343P	probably benign	Het
Rsu1	T	C	2: 13,174,815 (GRCm39)	Y225C	probably damaging	Het
Scyl1	A	G	19: 5,820,481 (GRCm39)	S118P	probably damaging	Het
Sec61a1	T	C	6: 88,483,131 (GRCm39)	N414D	probably benign	Het
Secisbp2l	C	T	2: 125,582,657 (GRCm39)	G933D	possibly damaging	Het
Sema7a	A	G	9: 57,860,834 (GRCm39)	D65G	probably benign	Het
Slc25a45	A	G	19: 5,934,464 (GRCm39)	Y144C	probably damaging	Het
Slc26a6	A	G	9: 108,733,579 (GRCm39)	Y103C	probably damaging	Het
Stat3	C	T	11: 100,794,500 (GRCm39)	D270N	probably damaging	Het
Taar8b	T	C	10: 23,967,736 (GRCm39)	S153G	probably benign	Het
Top1	A	G	2: 160,562,885 (GRCm39)	E697G	possibly damaging	Het
Trappc11	G	A	8: 47,966,801 (GRCm39)	T470I	probably damaging	Het
Ttc7b	G	A	12: 100,466,376 (GRCm39)	R79C	probably damaging	Het
Vmn2r110	A	T	17: 20,804,029 (GRCm39)	L182*	probably null	Het
Zgrf1	T	C	3: 127,394,679 (GRCm39)	I1345T	probably benign	Het
Zscan25	G	T	5: 145,227,815 (GRCm39)	R493L	probably benign	Het

Other mutations in Usp29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00659:Usp29	APN	7	6,965,281 (GRCm39)	missense	probably benign	0.06
IGL01588:Usp29	APN	7	6,965,610 (GRCm39)	missense	probably benign	0.33
IGL02032:Usp29	APN	7	6,965,017 (GRCm39)	missense	probably benign	0.41
IGL02052:Usp29	APN	7	6,965,525 (GRCm39)	missense	probably benign	0.06
IGL02331:Usp29	APN	7	6,965,155 (GRCm39)	missense	probably benign	0.16
IGL02551:Usp29	APN	7	6,966,352 (GRCm39)	splice site	probably null
IGL02573:Usp29	APN	7	6,965,617 (GRCm39)	splice site	probably null
IGL02894:Usp29	APN	7	6,964,633 (GRCm39)	missense	probably benign	0.00
R0029:Usp29	UTSW	7	6,964,580 (GRCm39)	missense	probably damaging	0.99
R0142:Usp29	UTSW	7	6,965,334 (GRCm39)	missense	probably benign	0.12
R0452:Usp29	UTSW	7	6,966,181 (GRCm39)	missense	possibly damaging	0.82
R0680:Usp29	UTSW	7	6,965,884 (GRCm39)	missense	possibly damaging	0.92
R1161:Usp29	UTSW	7	6,964,529 (GRCm39)	missense	probably damaging	1.00
R2391:Usp29	UTSW	7	6,966,770 (GRCm39)	splice site	probably null
R3104:Usp29	UTSW	7	6,965,052 (GRCm39)	nonsense	probably null
R4119:Usp29	UTSW	7	6,965,805 (GRCm39)	missense	probably benign	0.03
R4490:Usp29	UTSW	7	6,964,949 (GRCm39)	missense	possibly damaging	0.68
R4606:Usp29	UTSW	7	6,966,356 (GRCm39)	splice site	probably null
R4670:Usp29	UTSW	7	6,965,914 (GRCm39)	missense	possibly damaging	0.91
R4777:Usp29	UTSW	7	6,965,747 (GRCm39)	missense	probably benign	0.07
R4783:Usp29	UTSW	7	6,964,390 (GRCm39)	missense	probably damaging	1.00
R4785:Usp29	UTSW	7	6,964,390 (GRCm39)	missense	probably damaging	1.00
R4896:Usp29	UTSW	7	6,965,158 (GRCm39)	missense	probably benign	0.29
R4915:Usp29	UTSW	7	6,964,504 (GRCm39)	missense	probably benign
R4944:Usp29	UTSW	7	6,964,927 (GRCm39)	missense	possibly damaging	0.92
R5004:Usp29	UTSW	7	6,965,158 (GRCm39)	missense	probably benign	0.29
R5171:Usp29	UTSW	7	6,965,074 (GRCm39)	missense	probably damaging	0.99
R5268:Usp29	UTSW	7	6,964,583 (GRCm39)	missense	probably damaging	0.98
R5572:Usp29	UTSW	7	6,965,191 (GRCm39)	missense	probably benign	0.12
R5933:Usp29	UTSW	7	6,964,744 (GRCm39)	missense	probably benign
R6694:Usp29	UTSW	7	6,965,276 (GRCm39)	missense	probably benign	0.03
R7389:Usp29	UTSW	7	6,966,457 (GRCm39)	missense	possibly damaging	0.82
R7446:Usp29	UTSW	7	6,964,219 (GRCm39)	missense	possibly damaging	0.93
R7447:Usp29	UTSW	7	6,964,219 (GRCm39)	missense	possibly damaging	0.93
R7535:Usp29	UTSW	7	6,964,219 (GRCm39)	missense	possibly damaging	0.93
R7537:Usp29	UTSW	7	6,964,219 (GRCm39)	missense	possibly damaging	0.93
R8081:Usp29	UTSW	7	6,966,629 (GRCm39)	missense	probably benign	0.02
R8233:Usp29	UTSW	7	6,965,406 (GRCm39)	missense	probably benign	0.12
R8703:Usp29	UTSW	7	6,964,321 (GRCm39)	missense	probably benign	0.32
R8725:Usp29	UTSW	7	6,965,917 (GRCm39)	missense	probably damaging	0.98
R8727:Usp29	UTSW	7	6,965,917 (GRCm39)	missense	probably damaging	0.98
R8844:Usp29	UTSW	7	6,964,891 (GRCm39)	missense	probably benign	0.02
R9173:Usp29	UTSW	7	6,964,636 (GRCm39)	missense	possibly damaging	0.92
R9616:Usp29	UTSW	7	6,966,179 (GRCm39)	missense	possibly damaging	0.91
R9623:Usp29	UTSW	7	6,964,396 (GRCm39)	missense	possibly damaging	0.60

Predicted Primers

PCR Primer
(F):5'- ATGAACAGAACGATGCCCATG -3'
(R):5'- ATGAACAATGAGGACCCTGG -3'

Sequencing Primer
(F):5'- CGATGCCCATGAGTTTTTAAGTC -3'
(R):5'- GGGAGTCTCCTCAATGTGTAC -3'

Posted On

2015-09-25