Mutagenetix > Incidental Mutation

Incidental Mutation 'R0254:Nhsl1'

34575

Institutional Source

Beutler Lab

Gene Symbol

Nhsl1

Ensembl Gene

ENSMUSG00000039835

Gene Name

NHS like 1

Synonyms

A630035H13Rik, 5730409E15Rik, D10Bwg0940e

MMRRC Submission

038485-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0254 (G1)

Quality Score

210

Status

Validated

Chromosome

Chromosomal Location

18194733-18409640 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 18348733 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 120 (E120G)

Ref Sequence

ENSEMBL: ENSMUSP00000147021 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037341] [ENSMUST00000100054] [ENSMUST00000162891] [ENSMUST00000207038]

AlphaFold

Q8CAF4

Predicted Effect

probably damaging
Transcript: ENSMUST00000037341
AA Change: E90G

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000040799
Gene: ENSMUSG00000039835
AA Change: E90G

Domain	Start	End	E-Value	Type
Pfam:NHS	258	906	1.6e-246	PFAM
low complexity region	918	938	N/A	INTRINSIC
low complexity region	942	950	N/A	INTRINSIC
low complexity region	958	970	N/A	INTRINSIC
low complexity region	992	1024	N/A	INTRINSIC
low complexity region	1171	1197	N/A	INTRINSIC
low complexity region	1373	1385	N/A	INTRINSIC
low complexity region	1442	1460	N/A	INTRINSIC
low complexity region	1484	1503	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000100054
AA Change: E42G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000097631
Gene: ENSMUSG00000039835
AA Change: E42G

Domain	Start	End	E-Value	Type
low complexity region	8	19	N/A	INTRINSIC
low complexity region	197	207	N/A	INTRINSIC
Pfam:NHS	253	902	7.3e-250	PFAM
low complexity region	914	934	N/A	INTRINSIC
low complexity region	938	946	N/A	INTRINSIC
low complexity region	954	966	N/A	INTRINSIC
low complexity region	988	1020	N/A	INTRINSIC
low complexity region	1167	1193	N/A	INTRINSIC
low complexity region	1369	1381	N/A	INTRINSIC
low complexity region	1438	1456	N/A	INTRINSIC
low complexity region	1480	1499	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159299

SMART Domains

Protein: ENSMUSP00000124629
Gene: ENSMUSG00000039835

Domain	Start	End	E-Value	Type
low complexity region	79	90	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160547

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160600

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160602

Predicted Effect

possibly damaging
Transcript: ENSMUST00000162891
AA Change: E42G

PolyPhen 2 Score 0.893 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000124072
Gene: ENSMUSG00000039835
AA Change: E42G

Domain	Start	End	E-Value	Type
low complexity region	8	19	N/A	INTRINSIC
low complexity region	197	207	N/A	INTRINSIC
Pfam:NHS	253	902	2.1e-250	PFAM
low complexity region	914	934	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000207038
AA Change: E120G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Meta Mutation Damage Score

0.2178

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

100% (100/100)

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700034J05Rik	T	A	6: 146,853,902 (GRCm39)	M252L	probably benign	Het
Abca6	A	G	11: 110,127,615 (GRCm39)	V314A	probably benign	Het
Abcb1b	A	T	5: 8,877,409 (GRCm39)	E656D	probably benign	Het
Abhd4	T	C	14: 54,500,691 (GRCm39)	I160T	probably benign	Het
Aco2	T	C	15: 81,773,557 (GRCm39)	V32A	probably damaging	Het
Actl6b	A	G	5: 137,552,406 (GRCm39)		probably benign	Het
Akap13	T	C	7: 75,386,352 (GRCm39)		probably benign	Het
Alpk3	A	T	7: 80,726,722 (GRCm39)	T136S	probably benign	Het
Ap1g1	G	T	8: 110,529,749 (GRCm39)	M56I	probably benign	Het
Arid2	C	T	15: 96,268,452 (GRCm39)	T855I	probably damaging	Het
Asprv1	T	C	6: 86,606,077 (GRCm39)	F308L	probably damaging	Het
Ass1	A	T	2: 31,404,831 (GRCm39)	N371Y	probably damaging	Het
Atp11b	T	A	3: 35,866,259 (GRCm39)	M378K	possibly damaging	Het
Atp1a3	T	C	7: 24,680,937 (GRCm39)		probably benign	Het
Blk	C	A	14: 63,618,253 (GRCm39)	A218S	probably benign	Het
C4b	T	A	17: 34,953,750 (GRCm39)	T953S	probably benign	Het
Cdadc1	T	C	14: 59,813,356 (GRCm39)		probably benign	Het
Cdca2	C	A	14: 67,914,627 (GRCm39)	L877F	probably damaging	Het
Ceacam10	G	T	7: 24,477,733 (GRCm39)	V83L	probably damaging	Het
Cep290	A	T	10: 100,350,436 (GRCm39)	I677F	probably benign	Het
Clip1	A	T	5: 123,755,395 (GRCm39)		probably benign	Het
Col11a2	G	T	17: 34,283,777 (GRCm39)		probably benign	Het
Coro1c	A	T	5: 113,983,313 (GRCm39)	V405D	probably benign	Het
Crebrf	A	G	17: 26,958,568 (GRCm39)	T13A	probably benign	Het
Cspg4	A	G	9: 56,804,694 (GRCm39)	E1835G	probably damaging	Het
Cubn	A	T	2: 13,480,846 (GRCm39)		probably null	Het
Cubn	T	C	2: 13,429,505 (GRCm39)	N1332S	probably benign	Het
Cubn	T	C	2: 13,445,325 (GRCm39)	T1014A	possibly damaging	Het
Efnb1	T	C	X: 98,180,634 (GRCm39)		probably benign	Het
Elf2	G	T	3: 51,215,611 (GRCm39)	P33Q	probably damaging	Het
Fap	C	T	2: 62,333,746 (GRCm39)	G633D	probably damaging	Het
Gm10288	T	C	3: 146,544,675 (GRCm39)		noncoding transcript	Het
Got2	T	C	8: 96,596,166 (GRCm39)	N318S	probably benign	Het
Guk1	A	T	11: 59,076,854 (GRCm39)	F76L	probably damaging	Het
H2-K2	A	T	17: 34,215,639 (GRCm39)		probably benign	Het
Helz2	C	A	2: 180,874,552 (GRCm39)	G1981C	probably damaging	Het
Hinfp	G	A	9: 44,209,536 (GRCm39)	H250Y	probably damaging	Het
Hnrnpm	C	T	17: 33,871,242 (GRCm39)		probably null	Het
Hsd11b2	T	A	8: 106,249,699 (GRCm39)	V270E	possibly damaging	Het
Igbp1b	A	T	6: 138,635,201 (GRCm39)	M81K	probably damaging	Het
Kif11	A	G	19: 37,399,957 (GRCm39)	T815A	probably benign	Het
Kit	G	A	5: 75,781,581 (GRCm39)	V337I	probably benign	Het
Klf11	T	C	12: 24,703,582 (GRCm39)	S6P	probably damaging	Het
Klk13	T	C	7: 43,373,245 (GRCm39)	V193A	probably benign	Het
Krt73	T	A	15: 101,708,324 (GRCm39)		probably benign	Het
L1td1	T	A	4: 98,625,419 (GRCm39)	L538*	probably null	Het
Macf1	A	G	4: 123,326,572 (GRCm39)	L2061P	probably damaging	Het
Mcm2	A	G	6: 88,860,998 (GRCm39)	I900T	probably damaging	Het
Med16	A	T	10: 79,736,034 (GRCm39)	N371K	possibly damaging	Het
Mepce	A	C	5: 137,783,698 (GRCm39)	D209E	possibly damaging	Het
Mrc2	C	G	11: 105,238,692 (GRCm39)	P1249R	probably benign	Het
Mx2	A	T	16: 97,357,295 (GRCm39)	I463L	probably benign	Het
Naaa	A	T	5: 92,412,994 (GRCm39)	N73K	probably damaging	Het
Nags	T	A	11: 102,038,771 (GRCm39)	L404Q	probably damaging	Het
Neb	A	G	2: 52,133,402 (GRCm39)	Y3379H	probably damaging	Het
Or11j4	T	C	14: 50,630,536 (GRCm39)	S108P	probably damaging	Het
Or4f53	A	C	2: 111,087,466 (GRCm39)	N2T	probably benign	Het
Or51a42	T	C	7: 103,708,728 (GRCm39)	H27R	probably benign	Het
Or51ah3	T	A	7: 103,209,829 (GRCm39)	Y48*	probably null	Het
Or51f5	C	A	7: 102,424,076 (GRCm39)	S115*	probably null	Het
Pcnt	A	G	10: 76,228,414 (GRCm39)	F1584L	probably benign	Het
Pdgfra	G	A	5: 75,328,596 (GRCm39)	V243I	probably damaging	Het
Polr2a	T	C	11: 69,634,497 (GRCm39)	I689V	possibly damaging	Het
Ppfia4	C	A	1: 134,251,962 (GRCm39)		probably benign	Het
Prmt8	C	A	6: 127,688,771 (GRCm39)	V200L	probably damaging	Het
Prpf8	T	A	11: 75,397,188 (GRCm39)	I2007N	possibly damaging	Het
Ptpn6	T	C	6: 124,705,113 (GRCm39)	E230G	probably damaging	Het
R3hcc1l	G	A	19: 42,551,587 (GRCm39)	V195I	probably damaging	Het
Rb1cc1	C	T	1: 6,333,071 (GRCm39)	T1330I	probably damaging	Het
Reep3	G	T	10: 66,857,575 (GRCm39)	T172N	probably benign	Het
Rfwd3	A	G	8: 112,020,655 (GRCm39)	V236A	probably benign	Het
Rgs22	T	C	15: 36,104,698 (GRCm39)	I121V	probably damaging	Het
Robo1	T	A	16: 72,461,058 (GRCm39)	F11I	probably benign	Het
Rsrc2	A	G	5: 123,878,910 (GRCm39)		probably benign	Het
Rubcn	A	G	16: 32,668,316 (GRCm39)	V117A	probably benign	Het
Scamp1	T	G	13: 94,347,088 (GRCm39)	N192T	probably benign	Het
Scn8a	T	A	15: 100,916,245 (GRCm39)	I1218N	probably damaging	Het
Serinc1	A	G	10: 57,399,304 (GRCm39)	S200P	probably damaging	Het
Serpinb9f	T	A	13: 33,518,574 (GRCm39)	F358Y	probably damaging	Het
Slc12a5	T	C	2: 164,839,165 (GRCm39)		probably null	Het
Slc5a4b	T	C	10: 75,906,462 (GRCm39)	M386V	possibly damaging	Het
Smarca5	A	G	8: 81,431,329 (GRCm39)	F963L	probably benign	Het
Smchd1	A	T	17: 71,718,886 (GRCm39)	F828I	probably benign	Het
Smr2l	A	T	5: 88,430,230 (GRCm39)	H42L	possibly damaging	Het
Stab2	G	T	10: 86,733,824 (GRCm39)	Q1333K	probably benign	Het
Svop	T	C	5: 114,176,600 (GRCm39)	S349G	probably benign	Het
Tdrd1	G	A	19: 56,830,998 (GRCm39)	S271N	probably benign	Het
Tec	G	A	5: 72,941,081 (GRCm39)	P159S	probably benign	Het
Tec	T	C	5: 72,920,899 (GRCm39)		probably benign	Het
Tfip11	G	A	5: 112,483,521 (GRCm39)	M645I	probably benign	Het
Thap12	A	T	7: 98,364,488 (GRCm39)	T219S	probably benign	Het
Tmem87a	C	T	2: 120,205,988 (GRCm39)	R329H	probably damaging	Het
Tpsab1	A	G	17: 25,562,719 (GRCm39)	Y227H	probably damaging	Het
Urah	G	A	7: 140,417,602 (GRCm39)	V114I	probably benign	Het
Wnt5a	G	A	14: 28,244,811 (GRCm39)	E353K	probably damaging	Het
Zfp1004	G	A	2: 150,033,784 (GRCm39)	R35K	possibly damaging	Het
Zfp101	A	T	17: 33,599,952 (GRCm39)	H601Q	possibly damaging	Het

Other mutations in Nhsl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00230:Nhsl1	APN	10	18,403,357 (GRCm39)	missense	probably benign	0.07
IGL01121:Nhsl1	APN	10	18,387,458 (GRCm39)	missense	probably damaging	1.00
IGL01775:Nhsl1	APN	10	18,400,222 (GRCm39)	missense	probably damaging	0.99
IGL02143:Nhsl1	APN	10	18,387,383 (GRCm39)	missense	possibly damaging	0.74
IGL02606:Nhsl1	APN	10	18,387,385 (GRCm39)	missense	probably damaging	1.00
IGL02642:Nhsl1	APN	10	18,284,138 (GRCm39)	missense	possibly damaging	0.96
IGL02866:Nhsl1	APN	10	18,403,355 (GRCm39)	missense	probably damaging	0.99
IGL03263:Nhsl1	APN	10	18,373,827 (GRCm39)	nonsense	probably null
IGL03380:Nhsl1	APN	10	18,399,627 (GRCm39)	nonsense	probably null
PIT4651001:Nhsl1	UTSW	10	18,284,183 (GRCm39)	missense	probably damaging	0.98
R0046:Nhsl1	UTSW	10	18,401,417 (GRCm39)	missense	probably damaging	1.00
R0046:Nhsl1	UTSW	10	18,401,417 (GRCm39)	missense	probably damaging	1.00
R0116:Nhsl1	UTSW	10	18,400,990 (GRCm39)	nonsense	probably null
R0245:Nhsl1	UTSW	10	18,400,856 (GRCm39)	missense	probably damaging	1.00
R0288:Nhsl1	UTSW	10	18,399,794 (GRCm39)	missense	probably damaging	1.00
R0648:Nhsl1	UTSW	10	18,407,474 (GRCm39)	missense	possibly damaging	0.92
R1055:Nhsl1	UTSW	10	18,401,223 (GRCm39)	missense	probably benign	0.08
R1300:Nhsl1	UTSW	10	18,284,209 (GRCm39)	missense	probably benign
R1384:Nhsl1	UTSW	10	18,284,261 (GRCm39)	missense	probably null	0.96
R1453:Nhsl1	UTSW	10	18,407,323 (GRCm39)	missense	probably damaging	1.00
R1523:Nhsl1	UTSW	10	18,284,103 (GRCm39)	missense	probably benign
R1595:Nhsl1	UTSW	10	18,402,096 (GRCm39)	missense	probably damaging	0.98
R1786:Nhsl1	UTSW	10	18,400,412 (GRCm39)	missense	probably benign	0.28
R1836:Nhsl1	UTSW	10	18,400,653 (GRCm39)	missense	possibly damaging	0.87
R1878:Nhsl1	UTSW	10	18,400,027 (GRCm39)	missense	probably damaging	1.00
R2013:Nhsl1	UTSW	10	18,387,340 (GRCm39)	missense	probably damaging	1.00
R2014:Nhsl1	UTSW	10	18,387,340 (GRCm39)	missense	probably damaging	1.00
R2015:Nhsl1	UTSW	10	18,387,340 (GRCm39)	missense	probably damaging	1.00
R3115:Nhsl1	UTSW	10	18,400,916 (GRCm39)	missense	probably damaging	1.00
R3116:Nhsl1	UTSW	10	18,400,916 (GRCm39)	missense	probably damaging	1.00
R3754:Nhsl1	UTSW	10	18,391,782 (GRCm39)	missense	probably damaging	0.99
R4342:Nhsl1	UTSW	10	18,402,437 (GRCm39)	missense	probably damaging	1.00
R4595:Nhsl1	UTSW	10	18,403,357 (GRCm39)	missense	probably benign	0.07
R4604:Nhsl1	UTSW	10	18,407,158 (GRCm39)	missense	probably damaging	0.99
R4666:Nhsl1	UTSW	10	18,407,153 (GRCm39)	missense	probably damaging	1.00
R5223:Nhsl1	UTSW	10	18,402,074 (GRCm39)	missense	probably damaging	1.00
R5258:Nhsl1	UTSW	10	18,400,070 (GRCm39)	nonsense	probably null
R5707:Nhsl1	UTSW	10	18,402,251 (GRCm39)	missense	probably damaging	1.00
R5796:Nhsl1	UTSW	10	18,399,998 (GRCm39)	missense	probably benign	0.06
R5960:Nhsl1	UTSW	10	18,402,724 (GRCm39)	missense	probably benign
R6190:Nhsl1	UTSW	10	18,345,789 (GRCm39)	intron	probably benign
R6272:Nhsl1	UTSW	10	18,400,253 (GRCm39)	missense	probably benign	0.01
R6677:Nhsl1	UTSW	10	18,401,610 (GRCm39)	missense	probably damaging	0.98
R6714:Nhsl1	UTSW	10	18,400,459 (GRCm39)	missense	possibly damaging	0.74
R6765:Nhsl1	UTSW	10	18,407,062 (GRCm39)	missense	probably benign	0.01
R6892:Nhsl1	UTSW	10	18,400,091 (GRCm39)	missense	probably damaging	1.00
R7049:Nhsl1	UTSW	10	18,407,386 (GRCm39)	missense	probably damaging	0.99
R7060:Nhsl1	UTSW	10	18,402,251 (GRCm39)	missense	probably damaging	1.00
R7236:Nhsl1	UTSW	10	18,401,512 (GRCm39)	missense	probably damaging	1.00
R7299:Nhsl1	UTSW	10	18,403,419 (GRCm39)	splice site	probably null
R7305:Nhsl1	UTSW	10	18,407,434 (GRCm39)	missense	possibly damaging	0.94
R7513:Nhsl1	UTSW	10	18,399,700 (GRCm39)	missense	probably damaging	1.00
R7566:Nhsl1	UTSW	10	18,391,867 (GRCm39)	missense	probably damaging	1.00
R8008:Nhsl1	UTSW	10	18,284,186 (GRCm39)	missense	probably damaging	0.96
R8135:Nhsl1	UTSW	10	18,407,180 (GRCm39)	missense	probably damaging	1.00
R8240:Nhsl1	UTSW	10	18,402,487 (GRCm39)	missense	probably benign	0.34
R8391:Nhsl1	UTSW	10	18,400,691 (GRCm39)	missense	possibly damaging	0.67
R8396:Nhsl1	UTSW	10	18,400,910 (GRCm39)	missense	probably benign	0.00
R8752:Nhsl1	UTSW	10	18,407,113 (GRCm39)	missense	probably benign	0.01
R9022:Nhsl1	UTSW	10	18,403,409 (GRCm39)	missense	possibly damaging	0.74
R9087:Nhsl1	UTSW	10	18,407,030 (GRCm39)	missense	probably damaging	1.00
R9360:Nhsl1	UTSW	10	18,194,898 (GRCm39)	missense	probably damaging	1.00
R9396:Nhsl1	UTSW	10	18,399,749 (GRCm39)	missense	probably damaging	1.00
R9665:Nhsl1	UTSW	10	18,401,599 (GRCm39)	missense	possibly damaging	0.53
R9673:Nhsl1	UTSW	10	18,402,665 (GRCm39)	missense	possibly damaging	0.87
Z1177:Nhsl1	UTSW	10	18,402,337 (GRCm39)	missense	probably benign	0.05

Predicted Primers

PCR Primer
(F):5'- GTGTGTTAAACACCACAGCCTTGTC -3'
(R):5'- ATGGAGGGGATTCTAAGCGTCACC -3'

Sequencing Primer
(F):5'- cttttagcaatcctcgtgcc -3'
(R):5'- CGTCGTATTTATGGAGACACTCAG -3'

Posted On

2013-05-09