Mutagenetix > Incidental Mutation

Incidental Mutation 'R4625:Ttc3'

346524

Institutional Source

Beutler Lab

Gene Symbol

Ttc3

Ensembl Gene

ENSMUSG00000040785

Gene Name

tetratricopeptide repeat domain 3

Synonyms

2610202A04Rik, D16Ium21, D16Ium21e, TPRD

MMRRC Submission

041890-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.812) question?

Stock #

R4625 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

94370618-94469343 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 94388272 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Stop codon at position 163 (L163*)

Ref Sequence

ENSEMBL: ENSMUSP00000156151 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000117648] [ENSMUST00000119131] [ENSMUST00000122895] [ENSMUST00000139513] [ENSMUST00000141856] [ENSMUST00000143145] [ENSMUST00000145432] [ENSMUST00000145883] [ENSMUST00000147046] [ENSMUST00000147352] [ENSMUST00000151770] [ENSMUST00000155692] [ENSMUST00000231569] [ENSMUST00000232395] [ENSMUST00000153062] [ENSMUST00000152117] [ENSMUST00000153988] [ENSMUST00000150346] [ENSMUST00000154243] [ENSMUST00000231915] [ENSMUST00000232660] [ENSMUST00000149885] [ENSMUST00000150097]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000117648
AA Change: L163*

SMART Domains

Protein: ENSMUSP00000112801
Gene: ENSMUSG00000040785
AA Change: L163*

Domain	Start	End	E-Value	Type
TPR	231	264	3.61e-2	SMART
TPR	265	298	3.32e-1	SMART
Blast:TPR	300	332	2e-12	BLAST
low complexity region	444	459	N/A	INTRINSIC
TPR	576	609	2.55e-2	SMART
low complexity region	720	732	N/A	INTRINSIC
coiled coil region	765	796	N/A	INTRINSIC
low complexity region	1018	1032	N/A	INTRINSIC
low complexity region	1036	1050	N/A	INTRINSIC
low complexity region	1170	1190	N/A	INTRINSIC
low complexity region	1248	1260	N/A	INTRINSIC
low complexity region	1278	1291	N/A	INTRINSIC
coiled coil region	1472	1570	N/A	INTRINSIC
low complexity region	1876	1887	N/A	INTRINSIC
RING	1931	1970	7e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000119131
AA Change: L163*

SMART Domains

Protein: ENSMUSP00000113311
Gene: ENSMUSG00000040785
AA Change: L163*

Domain	Start	End	E-Value	Type
Pfam:TPR_11	229	285	1.1e-12	PFAM
Pfam:TPR_1	232	264	2.1e-4	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000122895
AA Change: L145*

SMART Domains

Protein: ENSMUSP00000123037
Gene: ENSMUSG00000040785
AA Change: L145*

Domain	Start	End	E-Value	Type
TPR	213	246	3.61e-2	SMART
TPR	247	280	3.32e-1	SMART
Blast:TPR	282	314	3e-12	BLAST
low complexity region	426	441	N/A	INTRINSIC
TPR	558	591	2.55e-2	SMART
low complexity region	702	714	N/A	INTRINSIC
coiled coil region	747	778	N/A	INTRINSIC
low complexity region	1000	1014	N/A	INTRINSIC
low complexity region	1018	1032	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127667

SMART Domains

Protein: ENSMUSP00000122425
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
Pfam:TPR_11	22	89	4.7e-16	PFAM
Pfam:TPR_2	24	57	5.7e-4	PFAM
Pfam:TPR_1	25	57	3.5e-5	PFAM
Pfam:TPR_9	35	103	3.2e-6	PFAM
Pfam:TPR_1	58	89	2.1e-4	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127911

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130960

Predicted Effect

probably benign
Transcript: ENSMUST00000139513

SMART Domains

Protein: ENSMUSP00000117881
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
low complexity region	8	22	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000141856

SMART Domains

Protein: ENSMUSP00000117369
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
Pfam:TPR_1	90	121	1e-6	PFAM
Pfam:TPR_2	90	121	7.9e-6	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000143145

Predicted Effect

probably benign
Transcript: ENSMUST00000145432

Predicted Effect

probably benign
Transcript: ENSMUST00000145883

SMART Domains

Protein: ENSMUSP00000123442
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
transmembrane domain	42	64	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000147046

SMART Domains

Protein: ENSMUSP00000119265
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
low complexity region	43	58	N/A	INTRINSIC
Pfam:TPR_1	175	206	5.3e-6	PFAM
low complexity region	319	331	N/A	INTRINSIC
low complexity region	359	382	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000147352
AA Change: L145*

SMART Domains

Protein: ENSMUSP00000116097
Gene: ENSMUSG00000040785
AA Change: L145*

Domain	Start	End	E-Value	Type
TPR	213	246	3.61e-2	SMART
TPR	247	280	3.32e-1	SMART
Blast:TPR	282	314	3e-12	BLAST
low complexity region	426	441	N/A	INTRINSIC
TPR	558	591	2.55e-2	SMART
low complexity region	702	714	N/A	INTRINSIC
coiled coil region	747	778	N/A	INTRINSIC
low complexity region	1000	1014	N/A	INTRINSIC
low complexity region	1018	1032	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000151770
AA Change: L163*

SMART Domains

Protein: ENSMUSP00000121349
Gene: ENSMUSG00000040785
AA Change: L163*

Domain	Start	End	E-Value	Type
TPR	231	264	3.61e-2	SMART
TPR	265	298	3.32e-1	SMART
Blast:TPR	300	332	3e-12	BLAST
low complexity region	444	459	N/A	INTRINSIC
TPR	576	609	2.55e-2	SMART
low complexity region	720	732	N/A	INTRINSIC
coiled coil region	765	796	N/A	INTRINSIC
low complexity region	1018	1032	N/A	INTRINSIC
low complexity region	1036	1050	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000155692
AA Change: L182*

SMART Domains

Protein: ENSMUSP00000122724
Gene: ENSMUSG00000040785
AA Change: L182*

Domain	Start	End	E-Value	Type
TPR	250	283	3.61e-2	SMART
TPR	284	317	3.32e-1	SMART
Blast:TPR	319	351	3e-12	BLAST
low complexity region	463	478	N/A	INTRINSIC
TPR	595	628	2.55e-2	SMART
low complexity region	739	751	N/A	INTRINSIC
coiled coil region	784	815	N/A	INTRINSIC
low complexity region	1037	1051	N/A	INTRINSIC
low complexity region	1055	1069	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151192

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149753

Predicted Effect

probably benign
Transcript: ENSMUST00000231569

Predicted Effect

probably null
Transcript: ENSMUST00000232395
AA Change: L163*

Predicted Effect

probably benign
Transcript: ENSMUST00000153062

Predicted Effect

probably benign
Transcript: ENSMUST00000152117

SMART Domains

Protein: ENSMUSP00000116896
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
low complexity region	43	58	N/A	INTRINSIC
SCOP:d1ihga1	69	201	6e-8	SMART
Blast:TPR	175	208	1e-14	BLAST
low complexity region	319	331	N/A	INTRINSIC
coiled coil region	364	395	N/A	INTRINSIC
low complexity region	617	631	N/A	INTRINSIC
low complexity region	635	649	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000153988

SMART Domains

Protein: ENSMUSP00000118763
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
Blast:TPR	1	22	3e-6	BLAST
low complexity region	134	149	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000150346

SMART Domains

Protein: ENSMUSP00000122726
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
low complexity region	43	58	N/A	INTRINSIC
Pfam:TPR_1	175	206	9.6e-6	PFAM
low complexity region	319	331	N/A	INTRINSIC
coiled coil region	364	395	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154243

Predicted Effect

probably null
Transcript: ENSMUST00000231915
AA Change: L163*

Predicted Effect

probably null
Transcript: ENSMUST00000232660
AA Change: L163*

Predicted Effect

probably benign
Transcript: ENSMUST00000149885

SMART Domains

Protein: ENSMUSP00000122006
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
Pfam:TPR_2	1	31	3.5e-4	PFAM
Pfam:TPR_11	1	58	7.8e-16	PFAM
Pfam:TPR_1	2	31	1.8e-5	PFAM
Pfam:TPR_9	9	58	2.5e-6	PFAM
Pfam:TPR_17	20	53	4.2e-7	PFAM
Pfam:TPR_1	32	58	2.5e-4	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000150097

SMART Domains

Protein: ENSMUSP00000119035
Gene: ENSMUSG00000040785

Domain	Start	End	E-Value	Type
Blast:TPR	1	22	1e-6	BLAST

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

97% (75/77)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700018F24Rik	A	C	5: 145,044,883	E176A	possibly damaging	Het
2010111I01Rik	T	C	13: 63,068,092	S393P	probably benign	Het
4933417A18Rik	G	A	13: 34,932,465	G66S	probably damaging	Het
5830473C10Rik	G	T	5: 90,571,752	V236L	probably damaging	Het
Abcc2	A	G	19: 43,803,739	I320V	probably benign	Het
Abtb1	C	T	6: 88,836,287	A466T	probably benign	Het
Ak6	C	A	13: 100,655,673	T208K	probably benign	Het
Alkbh2	C	T	5: 114,124,226	E148K	probably damaging	Het
Anapc15	T	A	7: 101,901,032		probably benign	Het
Aspn	A	G	13: 49,557,425	D182G	probably benign	Het
Astn1	A	T	1: 158,580,294	D607V	probably damaging	Het
Btnl1	A	G	17: 34,379,751	I114V	probably null	Het
Ccdc159	A	G	9: 21,929,466	S110G	probably benign	Het
Ccdc94	T	A	17: 55,964,598	L173Q	probably damaging	Het
Cdh18	A	C	15: 22,714,042		probably benign	Het
Cdh22	A	G	2: 165,112,606	I665T	probably damaging	Het
Cenpk	T	A	13: 104,249,393	H265Q	possibly damaging	Het
Chd6	A	G	2: 160,969,492	L1397P	probably damaging	Het
Chia1	A	C	3: 106,128,940	N279H	probably benign	Het
Cyp8b1	T	C	9: 121,915,585	E227G	probably damaging	Het
Dmxl2	A	T	9: 54,404,120	N1772K	possibly damaging	Het
Dnah2	A	G	11: 69,463,661	S2244P	probably damaging	Het
Fshr	T	C	17: 88,985,720	Y510C	probably damaging	Het
Gm21188	G	T	13: 120,035,229	R35S	possibly damaging	Het
Gm5087	T	C	14: 13,158,798		noncoding transcript	Het
Gm7135	A	C	1: 97,459,626		noncoding transcript	Het
Hnrnpll	A	T	17: 80,050,862	Y153*	probably null	Het
Htt	T	A	5: 34,829,785	V1116E	probably damaging	Het
Ikzf5	A	T	7: 131,393,753		probably null	Het
Kcnb1	A	G	2: 167,188,233	S131P	probably damaging	Het
Kcnd3	C	T	3: 105,658,766	A421V	probably damaging	Het
Kctd21	A	G	7: 97,347,575	D85G	probably damaging	Het
Kera	A	G	10: 97,609,631	N284S	probably benign	Het
Kif1a	A	T	1: 93,042,659	D952E	probably benign	Het
Klf4	A	G	4: 55,530,370	V247A	probably benign	Het
Krt1	C	T	15: 101,846,187	G543S	unknown	Het
Lamc1	A	G	1: 153,242,696	S910P	probably benign	Het
Lin9	T	A	1: 180,689,280	N512K	probably damaging	Het
Mettl7a1	A	T	15: 100,313,058	Q170L	probably damaging	Het
Mroh2a	A	T	1: 88,254,965	N1205I	possibly damaging	Het
Mrps30	A	G	13: 118,386,714	V174A	probably benign	Het
Myo1g	T	C	11: 6,512,240	E574G	probably damaging	Het
Nphp3	G	A	9: 104,036,159	G997R	possibly damaging	Het
Obscn	A	G	11: 59,067,258	C3748R	probably damaging	Het
Olfr346	A	G	2: 36,688,071	D23G	probably benign	Het
Olfr466	T	A	13: 65,152,860	V212D	possibly damaging	Het
Olfr494	T	C	7: 108,367,688	L66P	probably damaging	Het
Olfr945	A	T	9: 39,258,318	M118K	probably damaging	Het
Orc5	G	T	5: 22,548,005	F10L	probably benign	Het
Ptch1	T	C	13: 63,523,164	T851A	probably benign	Het
Ranbp6	A	T	19: 29,810,863	Y696*	probably null	Het
Rbp3	A	G	14: 33,956,099	Q668R	probably benign	Het
Rfwd3	T	C	8: 111,276,358	T611A	probably benign	Het
Rhcg	T	A	7: 79,601,604	D219V	probably damaging	Het
Rmi1	A	G	13: 58,409,136	R400G	probably benign	Het
Slc25a26	G	T	6: 94,507,652	V58F	probably damaging	Het
Smarca5	T	A	8: 80,710,563	K721N	probably damaging	Het
Sp110	A	C	1: 85,577,329	F434C	probably benign	Het
Speer2	A	T	16: 69,858,754	Y61*	probably null	Het
Spef2	T	C	15: 9,647,438	Y961C	probably damaging	Het
Sptb	C	A	12: 76,587,326		probably null	Het
Svep1	T	G	4: 58,072,698	N2204H	probably damaging	Het
Tmem86a	C	A	7: 47,052,865	P13T	probably damaging	Het
Tmtc2	A	T	10: 105,303,650	S672T	probably benign	Het
Tox2	G	A	2: 163,314,416	S211N	possibly damaging	Het
Trpc6	A	T	9: 8,677,962	E762D	probably benign	Het
Tshb	C	T	3: 102,778,145		probably null	Het
Twsg1	G	T	17: 65,929,551	D161E	probably benign	Het
Uchl4	A	C	9: 64,235,798	D187A	probably damaging	Het
Vmn2r104	A	T	17: 20,048,181	W9R	probably benign	Het
Zfp14	G	A	7: 30,038,595	Q322*	probably null	Het
Znhit3	G	A	11: 84,911,490	P145S	probably damaging	Het

Other mutations in Ttc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00944:Ttc3	APN	16	94426761	splice site	probably null
IGL00979:Ttc3	APN	16	94456718	missense	probably damaging	1.00
IGL01520:Ttc3	APN	16	94390207	missense	probably benign	0.04
IGL01663:Ttc3	APN	16	94409731	critical splice donor site	probably null
IGL01720:Ttc3	APN	16	94385369	missense	probably damaging	0.99
IGL01736:Ttc3	APN	16	94442527	missense	probably damaging	0.99
IGL02045:Ttc3	APN	16	94409681	splice site	probably benign
IGL02203:Ttc3	APN	16	94418598	splice site	probably benign
IGL02327:Ttc3	APN	16	94448108	missense	probably damaging	1.00
IGL02794:Ttc3	APN	16	94467926	missense	probably damaging	1.00
IGL02898:Ttc3	APN	16	94419426	missense	probably damaging	1.00
PIT4378001:Ttc3	UTSW	16	94410906	missense	probably benign	0.01
R0064:Ttc3	UTSW	16	94422247	missense	possibly damaging	0.79
R0098:Ttc3	UTSW	16	94390265	missense	probably benign	0.02
R0112:Ttc3	UTSW	16	94385322	splice site	probably benign
R0135:Ttc3	UTSW	16	94462268	missense	possibly damaging	0.92
R0480:Ttc3	UTSW	16	94432004	nonsense	probably null
R0513:Ttc3	UTSW	16	94426212	missense	probably damaging	1.00
R0532:Ttc3	UTSW	16	94387330	splice site	probably benign
R0607:Ttc3	UTSW	16	94456785	nonsense	probably null
R0742:Ttc3	UTSW	16	94459880	missense	probably benign	0.23
R0905:Ttc3	UTSW	16	94456789	nonsense	probably null
R1118:Ttc3	UTSW	16	94416268	splice site	probably benign
R1355:Ttc3	UTSW	16	94418637	missense	possibly damaging	0.46
R1370:Ttc3	UTSW	16	94418637	missense	possibly damaging	0.46
R1486:Ttc3	UTSW	16	94448129	missense	probably damaging	1.00
R1598:Ttc3	UTSW	16	94422297	missense	probably damaging	1.00
R1641:Ttc3	UTSW	16	94443317	missense	probably benign	0.19
R2092:Ttc3	UTSW	16	94442832	missense	probably benign	0.02
R2232:Ttc3	UTSW	16	94459972	missense	probably benign	0.00
R2339:Ttc3	UTSW	16	94431998	missense	probably damaging	1.00
R2342:Ttc3	UTSW	16	94431998	missense	probably damaging	1.00
R2842:Ttc3	UTSW	16	94431998	missense	probably damaging	1.00
R3117:Ttc3	UTSW	16	94442563	missense	possibly damaging	0.51
R4194:Ttc3	UTSW	16	94422277	missense	probably damaging	0.99
R4329:Ttc3	UTSW	16	94466961	missense	probably damaging	1.00
R4431:Ttc3	UTSW	16	94410958	critical splice donor site	probably null
R4530:Ttc3	UTSW	16	94466877	intron	probably benign
R4531:Ttc3	UTSW	16	94466877	intron	probably benign
R4532:Ttc3	UTSW	16	94466877	intron	probably benign
R4533:Ttc3	UTSW	16	94466877	intron	probably benign
R4588:Ttc3	UTSW	16	94442901	missense	probably benign	0.01
R4676:Ttc3	UTSW	16	94442761	missense	probably damaging	1.00
R4700:Ttc3	UTSW	16	94439241	splice site	probably null
R4856:Ttc3	UTSW	16	94390283	missense	probably benign	0.32
R4867:Ttc3	UTSW	16	94454515	missense	probably damaging	0.96
R4885:Ttc3	UTSW	16	94419465	missense	probably damaging	1.00
R4885:Ttc3	UTSW	16	94426831	critical splice donor site	probably null
R4899:Ttc3	UTSW	16	94429455	missense	probably damaging	1.00
R4997:Ttc3	UTSW	16	94452982	missense	probably damaging	1.00
R5023:Ttc3	UTSW	16	94429359	missense	probably benign	0.01
R5105:Ttc3	UTSW	16	94466934	missense	possibly damaging	0.94
R5205:Ttc3	UTSW	16	94448059	missense	probably benign	0.07
R5287:Ttc3	UTSW	16	94459844	missense	probably benign	0.00
R5338:Ttc3	UTSW	16	94384041	missense	probably damaging	0.99
R5347:Ttc3	UTSW	16	94429620	missense	probably damaging	1.00
R5403:Ttc3	UTSW	16	94459844	missense	probably benign	0.00
R5460:Ttc3	UTSW	16	94457382	missense	probably benign	0.32
R5739:Ttc3	UTSW	16	94439324	nonsense	probably null
R6242:Ttc3	UTSW	16	94442695	missense	probably benign	0.04
R6253:Ttc3	UTSW	16	94457413	critical splice donor site	probably null
R6455:Ttc3	UTSW	16	94418623	start codon destroyed	probably null	0.83
R6559:Ttc3	UTSW	16	94422349	critical splice donor site	probably null
R6564:Ttc3	UTSW	16	94442611	missense	probably damaging	1.00
R6932:Ttc3	UTSW	16	94443453	missense	probably benign
R7331:Ttc3	UTSW	16	94394359	missense	probably benign	0.27
R7497:Ttc3	UTSW	16	94418682	missense	possibly damaging	0.93
R7610:Ttc3	UTSW	16	94427838	missense	probably benign	0.11
R7738:Ttc3	UTSW	16	94387382	missense	probably benign	0.00
R7970:Ttc3	UTSW	16	94457364	missense	probably damaging	1.00
R8052:Ttc3	UTSW	16	94467989	missense	probably benign	0.09
R8087:Ttc3	UTSW	16	94442953	missense	probably benign	0.00
R8309:Ttc3	UTSW	16	94466979	missense	probably damaging	1.00
R8320:Ttc3	UTSW	16	94418676	missense	probably damaging	1.00
R8322:Ttc3	UTSW	16	94454492	missense	probably damaging	1.00
R8518:Ttc3	UTSW	16	94457379	missense	probably benign	0.21
R8670:Ttc3	UTSW	16	94390208	missense	probably damaging	0.99
R8826:Ttc3	UTSW	16	94431970	missense	possibly damaging	0.85
R8868:Ttc3	UTSW	16	94451143	missense	probably benign	0.00
R8873:Ttc3	UTSW	16	94442983	missense	probably damaging	0.97
R8940:Ttc3	UTSW	16	94429499	missense	possibly damaging	0.94
R8993:Ttc3	UTSW	16	94427808	missense	possibly damaging	0.85
R9068:Ttc3	UTSW	16	94403360	missense	probably damaging	1.00
R9119:Ttc3	UTSW	16	94392091	missense	probably damaging	0.98
R9124:Ttc3	UTSW	16	94435530	missense	probably benign	0.00
R9129:Ttc3	UTSW	16	94384349	missense	probably benign	0.02
R9189:Ttc3	UTSW	16	94467972	missense	possibly damaging	0.62
R9217:Ttc3	UTSW	16	94429608	missense	possibly damaging	0.80
R9490:Ttc3	UTSW	16	94444501	missense	probably benign
R9564:Ttc3	UTSW	16	94448059	missense	probably benign	0.07
R9631:Ttc3	UTSW	16	94370722	intron	probably benign
X0022:Ttc3	UTSW	16	94442525	missense	probably benign	0.00
Y5378:Ttc3	UTSW	16	94412129	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- TGAAGATGCCTGTGAGTCCAC -3'
(R):5'- TGTTACAACACCAGTGAGACAAG -3'

Sequencing Primer
(F):5'- GAGTCCACAGTGACTGTTCTTAACG -3'
(R):5'- ATCATCTATGAACACATCCCATCTTC -3'

Posted On

2015-09-25