Mutagenetix > Incidental Mutation

Incidental Mutation 'R0265:Cdhr1'

34881

Institutional Source

Beutler Lab

Gene Symbol

Cdhr1

Ensembl Gene

ENSMUSG00000021803

Gene Name

cadherin-related family member 1

Synonyms

Pcdh21, Prcad

MMRRC Submission

038491-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.142) question?

Stock #

R0265 (G1)

Quality Score

144

Status

Validated

Chromosome

Chromosomal Location

37077857-37098347 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 37081376 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 581 (V581D)

Ref Sequence

ENSEMBL: ENSMUSP00000022337 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022337]

AlphaFold

Q8VHP6

Predicted Effect

probably benign
Transcript: ENSMUST00000022337
AA Change: V581D

PolyPhen 2 Score 0.023 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000022337
Gene: ENSMUSG00000021803
AA Change: V581D

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
CA	57	133	9.4e-7	SMART
CA	157	245	9.44e-21	SMART
CA	269	352	2.06e-12	SMART
CA	383	471	2.68e-11	SMART
CA	495	575	5.26e-19	SMART
CA	594	685	1.64e-6	SMART
transmembrane domain	703	725	N/A	INTRINSIC
low complexity region	734	745	N/A	INTRINSIC
low complexity region	789	799	N/A	INTRINSIC
low complexity region	817	829	N/A	INTRINSIC

Meta Mutation Damage Score

0.2691

Coding Region Coverage

1x: 98.5%
3x: 97.4%
10x: 95.6%
20x: 92.0%

Validation Efficiency

99% (83/84)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the cadherin superfamily of calcium-dependent cell adhesion molecules. The encoded protein is a photoreceptor-specific cadherin that plays a role in outer segment disc morphogenesis. Mutations in this gene are associated with inherited retinal dystrophies. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2013]
PHENOTYPE: Mice homozygous for a targeted null mutation exhibit progressive degeneration of retinal photoreceptor cells and a slight reduction in light responses. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930452B06Rik	T	G	14: 8,431,667	Y655S	probably damaging	Het
9330182L06Rik	T	C	5: 9,434,681	L486P	probably damaging	Het
Abca14	A	G	7: 120,223,627	I321V	probably benign	Het
Adcy7	A	G	8: 88,324,763	D837G	probably damaging	Het
Aldh1a1	T	A	19: 20,640,076	Y457*	probably null	Het
Alox5	T	C	6: 116,420,362	Y287C	probably benign	Het
Ano8	T	C	8: 71,480,524		probably benign	Het
Ap3b1	A	G	13: 94,493,681	K815E	unknown	Het
Atp11a	A	T	8: 12,856,930		probably benign	Het
Atp6v0a1	A	T	11: 101,048,515	D702V	possibly damaging	Het
Cacna1b	T	A	2: 24,761,844	N108Y	probably damaging	Het
Ccdc57	G	C	11: 120,921,811	A39G	probably benign	Het
Cyp2b23	A	G	7: 26,672,879		probably benign	Het
D430041D05Rik	G	C	2: 104,167,950	P1836R	probably damaging	Het
Ddit4l	C	T	3: 137,624,287		probably benign	Het
Dnah8	A	T	17: 30,690,271	I1024F	probably benign	Het
Edc3	T	A	9: 57,727,338	F213I	probably damaging	Het
Edrf1	G	A	7: 133,657,045	D717N	probably damaging	Het
Efna5	G	A	17: 62,651,073	P63S	probably damaging	Het
Entpd3	A	G	9: 120,558,481	Y248C	probably damaging	Het
Flcn	G	A	11: 59,795,809	Q373*	probably null	Het
Fry	T	C	5: 150,434,776	V1908A	probably damaging	Het
Gabrg3	A	T	7: 57,381,617	Y58*	probably null	Het
Gabrp	A	T	11: 33,552,614	Y417N	probably damaging	Het
Golga2	C	A	2: 32,304,952		probably null	Het
Grip2	C	A	6: 91,773,792		probably null	Het
Gsx2	A	G	5: 75,077,068	Y227C	probably damaging	Het
Hif3a	T	C	7: 17,035,868	*665W	probably null	Het
Hist1h2aa	T	C	13: 23,934,649	V63A	probably benign	Het
Hsd3b1	C	A	3: 98,852,773	V301L	probably damaging	Het
Ifitm5	T	C	7: 140,950,008		probably benign	Het
Inpp4a	A	T	1: 37,378,986	D498V	probably damaging	Het
Itga1	A	T	13: 114,992,459	D554E	probably benign	Het
Itk	G	A	11: 46,389,458		probably benign	Het
Kdm3b	T	A	18: 34,795,663		probably benign	Het
Klhl6	A	G	16: 19,948,234	V470A	probably benign	Het
Lamb3	T	A	1: 193,320,531	W95R	probably damaging	Het
Lbhd2	T	A	12: 111,410,242	I41N	probably damaging	Het
Lrp4	A	T	2: 91,490,670	S1014C	probably damaging	Het
Ltbp2	C	T	12: 84,785,969		probably null	Het
Map3k19	A	G	1: 127,822,182	I1144T	possibly damaging	Het
Mfsd10	T	C	5: 34,635,163		probably benign	Het
Mocos	A	G	18: 24,666,276	D189G	probably benign	Het
Mvb12a	T	A	8: 71,547,010	F224L	probably damaging	Het
Myo15	A	T	11: 60,514,897		probably null	Het
Nos2	A	T	11: 78,937,602	H249L	probably damaging	Het
Notum	A	G	11: 120,658,334	M184T	probably benign	Het
Nvl	C	A	1: 181,134,830	D192Y	probably damaging	Het
Olfr1024	T	A	2: 85,904,247	N269I	probably benign	Het
Olfr1065	C	A	2: 86,445,959	V8L	probably benign	Het
Olfr1308	T	C	2: 111,960,494	Y193C	probably damaging	Het
Olfr204	A	T	16: 59,315,071	F112Y	probably damaging	Het
Olfr218	A	G	1: 173,203,917	K187R	probably benign	Het
Osgin1	A	G	8: 119,445,657	I397V	possibly damaging	Het
Otulin	A	G	15: 27,616,424	V123A	probably damaging	Het
P4ha1	A	G	10: 59,348,259	Y181C	probably damaging	Het
Pcdhgc5	A	T	18: 37,821,350	D559V	probably damaging	Het
Phf2	T	C	13: 48,828,794	N151S	unknown	Het
Plxnc1	C	A	10: 94,813,129	G1263C	probably benign	Het
Rad51ap1	A	G	6: 126,924,197	*338Q	probably null	Het
Raver1	A	G	9: 21,075,659	S676P	probably benign	Het
Rfx8	T	C	1: 39,688,577	E196G	possibly damaging	Het
Rreb1	A	T	13: 37,916,155	K187*	probably null	Het
Rxfp1	T	C	3: 79,667,654	T217A	probably benign	Het
Rxra	T	C	2: 27,752,430	L305P	probably damaging	Het
Sardh	T	C	2: 27,227,066		probably benign	Het
Skor2	A	T	18: 76,876,598	E952D	probably damaging	Het
Slc22a29	A	T	19: 8,169,970	S343T	probably benign	Het
Sorbs2	T	C	8: 45,785,337		probably benign	Het
Supt7l	C	T	5: 31,515,918	V329I	probably benign	Het
Taar2	G	A	10: 23,941,495	R311H	probably benign	Het
Tac1	T	C	6: 7,559,165		probably benign	Het
Tcn2	A	T	11: 3,922,044	V361D	probably damaging	Het
Tm2d3	G	A	7: 65,697,834	A170T	possibly damaging	Het
Tnks	G	A	8: 34,839,970	R1142*	probably null	Het
Ttll7	C	A	3: 146,944,160	Y648*	probably null	Het
Umod	G	T	7: 119,466,073	Q578K	probably benign	Het
Upf2	G	A	2: 6,027,204		probably benign	Het
Vmn2r92	C	T	17: 18,167,957	A408V	probably damaging	Het
Washc5	A	G	15: 59,338,960	I1013T	probably benign	Het
Wdr60	T	C	12: 116,257,406		probably benign	Het
Zfp704	C	A	3: 9,565,157	R48L	probably damaging	Het

Other mutations in Cdhr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00673:Cdhr1	APN	14	37085528	missense	probably benign	0.06
IGL01820:Cdhr1	APN	14	37085579	missense	probably benign	0.11
IGL02469:Cdhr1	APN	14	37085600	missense	possibly damaging	0.68
IGL03373:Cdhr1	APN	14	37096300	missense	possibly damaging	0.89
IGL03055:Cdhr1	UTSW	14	37095097	missense	probably benign	0.07
PIT4494001:Cdhr1	UTSW	14	37082856	missense	probably benign	0.07
R0110:Cdhr1	UTSW	14	37080676	missense	probably damaging	0.99
R0219:Cdhr1	UTSW	14	37079601	missense	possibly damaging	0.82
R0450:Cdhr1	UTSW	14	37080676	missense	probably damaging	0.99
R0510:Cdhr1	UTSW	14	37080676	missense	probably damaging	0.99
R0522:Cdhr1	UTSW	14	37094000	critical splice donor site	probably null
R0788:Cdhr1	UTSW	14	37087375	critical splice donor site	probably null
R0880:Cdhr1	UTSW	14	37080634	missense	possibly damaging	0.53
R1209:Cdhr1	UTSW	14	37082942	splice site	probably null
R1253:Cdhr1	UTSW	14	37079625	missense	probably benign
R1604:Cdhr1	UTSW	14	37095093	missense	probably benign	0.29
R1968:Cdhr1	UTSW	14	37079725	missense	probably benign	0.00
R2064:Cdhr1	UTSW	14	37095105	missense	probably benign	0.10
R2248:Cdhr1	UTSW	14	37081377	missense	probably benign
R3843:Cdhr1	UTSW	14	37084927	missense	probably benign	0.03
R4178:Cdhr1	UTSW	14	37082939	splice site	probably null
R4205:Cdhr1	UTSW	14	37080504	missense	probably benign	0.00
R4681:Cdhr1	UTSW	14	37096237	missense	probably benign	0.01
R5039:Cdhr1	UTSW	14	37079643	missense	probably benign	0.02
R5088:Cdhr1	UTSW	14	37089465	missense	probably benign	0.08
R5383:Cdhr1	UTSW	14	37089007	missense	possibly damaging	0.94
R5507:Cdhr1	UTSW	14	37082845	missense	probably damaging	0.98
R5933:Cdhr1	UTSW	14	37089462	missense	probably benign	0.01
R6074:Cdhr1	UTSW	14	37079643	missense	probably benign	0.02
R6291:Cdhr1	UTSW	14	37089465	missense	probably benign	0.31
R6449:Cdhr1	UTSW	14	37090597	missense	probably benign	0.35
R6890:Cdhr1	UTSW	14	37085645	missense	probably damaging	1.00
R6891:Cdhr1	UTSW	14	37097377	splice site	probably null
R7653:Cdhr1	UTSW	14	37082201	missense	probably benign	0.27
R7740:Cdhr1	UTSW	14	37089380	missense	probably damaging	0.98
R7805:Cdhr1	UTSW	14	37081545	missense	probably benign	0.00
R8081:Cdhr1	UTSW	14	37094010	missense	probably benign	0.01
R8147:Cdhr1	UTSW	14	37079652	missense	probably benign	0.02
R8164:Cdhr1	UTSW	14	37079542	missense	probably damaging	1.00
R8283:Cdhr1	UTSW	14	37082780	missense	probably benign	0.00
R8343:Cdhr1	UTSW	14	37091978	missense	probably benign	0.00
R8848:Cdhr1	UTSW	14	37080574	missense	probably benign	0.21
R8938:Cdhr1	UTSW	14	37087448	missense	probably benign	0.17
R9031:Cdhr1	UTSW	14	37094019	missense	probably benign
R9035:Cdhr1	UTSW	14	37088967	missense	possibly damaging	0.69
R9206:Cdhr1	UTSW	14	37080548	missense	probably damaging	0.99
R9246:Cdhr1	UTSW	14	37079697	missense	possibly damaging	0.46
R9274:Cdhr1	UTSW	14	37080607	missense	probably benign	0.15
R9366:Cdhr1	UTSW	14	37089506	missense	possibly damaging	0.92
R9401:Cdhr1	UTSW	14	37098098	missense	probably benign
R9545:Cdhr1	UTSW	14	37095059	missense	possibly damaging	0.51
R9713:Cdhr1	UTSW	14	37079794	missense	probably damaging	1.00
R9797:Cdhr1	UTSW	14	37081505	missense	probably damaging	1.00
X0062:Cdhr1	UTSW	14	37079779	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CGTGGCTTCACTCCCAGAATAAGG -3'
(R):5'- TGGGCTTATCTACACTCAGCCCTG -3'

Sequencing Primer
(F):5'- gcaagttcaacattcaagccc -3'
(R):5'- CTGGGCCAGCCTGGATG -3'

Posted On

2013-05-09