Mutagenetix > Incidental Mutations

Incidental Mutation 'R4679:Cdh9'

349952

Institutional Source

Beutler Lab

Gene Symbol

Cdh9

Ensembl Gene

ENSMUSG00000025370

Gene Name

cadherin 9

Synonyms

T1-cadherin

MMRRC Submission

041932-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.172) question?

Stock #

R4679 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

16728756-16857094 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 16850959 bp

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 605 (M605V)

Ref Sequence

ENSEMBL: ENSMUSP00000154022 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026432] [ENSMUST00000228307]

Predicted Effect

probably benign
Transcript: ENSMUST00000026432
AA Change: M605V

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000026432
Gene: ENSMUSG00000025370
AA Change: M605V

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
CA	75	156	2.84e-15	SMART
CA	180	265	5.63e-28	SMART
CA	289	381	1.12e-13	SMART
CA	404	485	8.03e-24	SMART
CA	508	595	1.34e-2	SMART
transmembrane domain	613	635	N/A	INTRINSIC
Pfam:Cadherin_C	638	782	1.5e-54	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227900

Predicted Effect

probably benign
Transcript: ENSMUST00000228307
AA Change: M605V

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.9%

Validation Efficiency

98% (112/114)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a type II classical cadherin from the cadherin superfamily, integral membrane proteins that mediate calcium-dependent cell-cell adhesion. Mature cadherin proteins are composed of a large N-terminal extracellular domain, a single membrane-spanning domain, and a small, highly conserved C-terminal cytoplasmic domain. The extracellular domain consists of 5 subdomains, each containing a cadherin motif, and appears to determine the specificity of the protein's homophilic cell adhesion activity. Type II (atypical) cadherins are defined based on their lack of a HAV cell adhesion recognition sequence specific to type I cadherins. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous knockout results in the formation of abnormal axonal arbors in some retinal type 5 bipolar cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110043O21Rik	C	T	4: 35,226,033		probably benign	Het
AA986860	T	A	1: 130,742,403	S121T	possibly damaging	Het
Abcb9	A	G	5: 124,078,804	V450A	probably benign	Het
Abcg1	A	T	17: 31,114,261	R659S	probably benign	Het
Acad9	A	T	3: 36,088,840	N508I	possibly damaging	Het
Acrbp	T	A	6: 125,060,918	C393S	probably damaging	Het
Adcy7	T	C	8: 88,317,937	V486A	probably benign	Het
Adgrf1	G	T	17: 43,310,493	L540F	probably damaging	Het
Ap5m1	T	C	14: 49,078,828	I285T	probably benign	Het
Arhgap27	G	T	11: 103,360,949		probably benign	Het
Armc5	A	T	7: 128,240,104	E198V	possibly damaging	Het
Atp8b5	A	T	4: 43,365,955	K742M	probably benign	Het
Atp9a	T	G	2: 168,661,964	T603P	possibly damaging	Het
Bsn	A	G	9: 108,110,130	S2808P	unknown	Het
Catsper4	T	C	4: 134,226,605	N81S	probably damaging	Het
Ccl17	C	G	8: 94,810,500	T10S	probably benign	Het
Cdc123	A	T	2: 5,844,892	V6D	probably damaging	Het
Cdca2	T	C	14: 67,714,966	K14E	possibly damaging	Het
Cdh3	C	A	8: 106,539,856	T302K	probably damaging	Het
Cdk4	A	G	10: 127,064,911	E144G	possibly damaging	Het
Clasp1	C	T	1: 118,543,271	A879V	probably damaging	Het
Cldn8	G	A	16: 88,562,408	H210Y	probably benign	Het
Cntn5	T	C	9: 9,970,531	D518G	probably benign	Het
Cog1	C	T	11: 113,652,290	A208V	probably damaging	Het
Col4a2	T	A	8: 11,431,337	H836Q	possibly damaging	Het
Copb1	T	C	7: 114,248,976	D108G	probably damaging	Het
Csmd3	A	T	15: 48,161,083	Y600*	probably null	Het
Cyb5r1	T	A	1: 134,407,833	H164Q	probably benign	Het
Dkc1	A	G	X: 75,100,992	I215V	probably benign	Het
Enpep	A	G	3: 129,303,713		probably null	Het
Fam71b	T	A	11: 46,404,813	M4K	possibly damaging	Het
Fbln7	A	G	2: 128,894,886	Y311C	probably damaging	Het
Fign	A	C	2: 63,979,261	L555R	probably damaging	Het
Fkbp7	A	T	2: 76,671,688		probably benign	Het
Fmn2	T	C	1: 174,503,162	S373P	unknown	Het
Frmd4b	C	T	6: 97,295,666	D868N	possibly damaging	Het
Gfpt2	A	G	11: 49,823,737	N321S	probably benign	Het
Glmn	G	T	5: 107,561,075	T372K	probably damaging	Het
Gm26602	C	T	10: 79,910,974		probably benign	Het
Gm6797	A	G	X: 8,639,694		noncoding transcript	Het
Gpat3	T	A	5: 100,893,456	F383L	probably damaging	Het
Grrp1	A	G	4: 134,251,436	S244P	probably damaging	Het
H2-M11	C	T	17: 36,548,150	T194I	possibly damaging	Het
Hcn1	C	T	13: 117,657,015	H268Y	probably benign	Het
Hectd4	G	T	5: 121,325,251	C2345F	possibly damaging	Het
Htt	A	G	5: 34,820,080	D770G	probably benign	Het
Ints3	T	C	3: 90,408,510	T316A	possibly damaging	Het
Ipo9	A	G	1: 135,394,169	F608L	probably benign	Het
Irak1	A	C	X: 74,022,389		probably benign	Het
Jam2	G	A	16: 84,812,952	V151M	probably damaging	Het
Lag3	T	A	6: 124,904,545	Q488L	possibly damaging	Het
Large2	A	T	2: 92,367,558	L266Q	probably benign	Het
Lrp3	T	G	7: 35,203,940	D327A	probably damaging	Het
Mamstr	C	A	7: 45,644,692		probably benign	Het
Mettl14	G	A	3: 123,369,414		probably benign	Het
Miga1	A	G	3: 152,322,475	V139A	probably damaging	Het
Mthfd2l	A	C	5: 90,948,911	R130S	probably benign	Het
Myo1b	A	G	1: 51,757,973	I970T	possibly damaging	Het
Nat10	C	A	2: 103,732,170	W607L	probably damaging	Het
Nop56	A	G	2: 130,278,273	T183A	probably benign	Het
Olfr1258	A	G	2: 89,930,664	Y285C	possibly damaging	Het
Olfr239	A	G	17: 33,199,393	H115R	probably benign	Het
Olfr291	T	A	7: 84,856,904	Y178*	probably null	Het
Olfr464	T	A	11: 87,914,310	M199L	probably benign	Het
Olfr592	A	G	7: 103,187,102	Y167C	probably benign	Het
Olfr710	A	T	7: 106,944,945	S19T	probably benign	Het
Pcdhb12	T	C	18: 37,436,949	F383L	probably damaging	Het
Pde4dip	C	A	3: 97,695,005	D2252Y	probably damaging	Het
Peg10	GC	GCTCC	6: 4,756,452		probably benign	Het
Plscr2	T	G	9: 92,287,770	L91R	probably benign	Het
Plxnc1	T	A	10: 94,794,444	Y1531F	probably damaging	Het
Ptprq	A	T	10: 107,685,182	F710I	probably benign	Het
Rad51ap2	A	G	12: 11,456,551	E158G	probably damaging	Het
Rasip1	T	A	7: 45,627,823	H18Q	possibly damaging	Het
Rcsd1	T	A	1: 165,655,924	N166I	probably damaging	Het
Ripor1	T	A	8: 105,617,785	I517K	possibly damaging	Het
Ryr2	T	A	13: 11,824,369	H506L	probably benign	Het
Secisbp2l	C	T	2: 125,740,737	G933D	possibly damaging	Het
Sept14	T	C	5: 129,693,026	D202G	possibly damaging	Het
Siglec1	A	T	2: 131,073,411	L1420Q	possibly damaging	Het
Slc22a29	T	A	19: 8,161,584	I505F	possibly damaging	Het
Sorcs1	T	A	19: 50,182,669	Y927F	probably benign	Het
Spats2	T	G	15: 99,180,722	M191R	possibly damaging	Het
Sycp1	C	T	3: 102,922,462		probably null	Het
T2	A	G	17: 8,391,016	E99G	possibly damaging	Het
Taf3	G	A	2: 10,048,564		probably benign	Het
Tnfsf10	A	T	3: 27,335,579	N263I	probably damaging	Het
Treml2	A	T	17: 48,308,175	R229S	probably benign	Het
Trmt13	T	C	3: 116,589,755	K125E	probably damaging	Het
Ttc9	G	T	12: 81,631,601	C66F	probably damaging	Het
Vmn2r63	C	T	7: 42,928,120	M331I	probably benign	Het
Zfp353-ps	T	C	8: 42,082,214		noncoding transcript	Het
Zfp932	A	T	5: 110,009,894	H486L	probably damaging	Het

Other mutations in Cdh9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00429:Cdh9	APN	15	16828362	missense	probably damaging	1.00
IGL00555:Cdh9	APN	15	16823406	missense	probably damaging	1.00
IGL01110:Cdh9	APN	15	16855926	missense	possibly damaging	0.63
IGL01432:Cdh9	APN	15	16830947	missense	probably damaging	1.00
IGL01768:Cdh9	APN	15	16778225	missense	possibly damaging	0.51
IGL02043:Cdh9	APN	15	16856232	missense	probably damaging	1.00
IGL02304:Cdh9	APN	15	16848601	missense	probably benign	0.01
IGL02380:Cdh9	APN	15	16856000	missense	possibly damaging	0.79
IGL02505:Cdh9	APN	15	16855989	missense	probably damaging	1.00
IGL02675:Cdh9	APN	15	16849076	splice site	probably null
IGL02679:Cdh9	APN	15	16832230	missense	probably damaging	0.97
IGL03288:Cdh9	APN	15	16856049	missense	probably damaging	1.00
R0426:Cdh9	UTSW	15	16823454	critical splice donor site	probably null
R0726:Cdh9	UTSW	15	16831044	missense	probably benign	0.00
R1335:Cdh9	UTSW	15	16850792	missense	probably benign	0.00
R1368:Cdh9	UTSW	15	16848482	splice site	probably benign
R1766:Cdh9	UTSW	15	16778306	missense	probably damaging	1.00
R1916:Cdh9	UTSW	15	16823275	missense	probably benign	0.03
R2325:Cdh9	UTSW	15	16778200	missense	probably benign
R2424:Cdh9	UTSW	15	16850354	missense	probably damaging	1.00
R3104:Cdh9	UTSW	15	16855814	missense	probably damaging	1.00
R3837:Cdh9	UTSW	15	16823438	nonsense	probably null
R3839:Cdh9	UTSW	15	16823438	nonsense	probably null
R4241:Cdh9	UTSW	15	16849079	critical splice acceptor site	probably null
R4248:Cdh9	UTSW	15	16850388	missense	probably benign	0.00
R4576:Cdh9	UTSW	15	16832239	missense	possibly damaging	0.73
R4896:Cdh9	UTSW	15	16778156	missense	probably benign	0.12
R4961:Cdh9	UTSW	15	16850828	missense	probably benign
R5050:Cdh9	UTSW	15	16778147	missense	probably benign	0.12
R5089:Cdh9	UTSW	15	16778276	missense	probably damaging	1.00
R5268:Cdh9	UTSW	15	16851013	missense	probably benign
R5567:Cdh9	UTSW	15	16855844	missense	probably damaging	1.00
R5646:Cdh9	UTSW	15	16823285	missense	probably damaging	1.00
R5894:Cdh9	UTSW	15	16832100	missense	possibly damaging	0.47
R6440:Cdh9	UTSW	15	16823423	missense	probably benign	0.01
R6441:Cdh9	UTSW	15	16823423	missense	probably benign	0.01
R7225:Cdh9	UTSW	15	16856073	missense	probably damaging	1.00
R7247:Cdh9	UTSW	15	16778255	missense	probably damaging	1.00
R7593:Cdh9	UTSW	15	16823175	missense	probably damaging	1.00
R7615:Cdh9	UTSW	15	16856230	missense	probably damaging	1.00
R7632:Cdh9	UTSW	15	16851029	splice site	probably null
R7991:Cdh9	UTSW	15	16828403	missense	probably damaging	1.00
R8035:Cdh9	UTSW	15	16831066	missense	probably damaging	0.97
RF006:Cdh9	UTSW	15	16855830	missense	probably damaging	0.97
X0062:Cdh9	UTSW	15	16848539	missense	possibly damaging	0.81
Z1177:Cdh9	UTSW	15	16850364	missense	probably benign	0.16

Predicted Primers

PCR Primer
(F):5'- CCTCTTCAGATAATACAGCAGGAATTG -3'
(R):5'- CCAAGGTCATTAGAACCATAAGTG -3'

Sequencing Primer
(F):5'- TTGTAACTCGAAAAGATGGGTACAGC -3'
(R):5'- CAGAGGGCATTGGATCCCATTATAC -3'

Posted On

2015-10-08