Mutagenetix > Incidental Mutations

Incidental Mutation 'R4679:Irak1'

349967

Institutional Source

Beutler Lab

Gene Symbol

Irak1

Ensembl Gene

ENSMUSG00000031392

Gene Name

interleukin-1 receptor-associated kinase 1

Synonyms

IRAK-1, Il1rak, Plpk, mPLK

MMRRC Submission

041932-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4679 (G1)

Quality Score

222

Status

Validated

Chromosome

Chromosomal Location

74013914-74023918 bp(-) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to C at 74022389 bp

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000127115 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033769] [ENSMUST00000068286] [ENSMUST00000100750] [ENSMUST00000101458] [ENSMUST00000114352] [ENSMUST00000114353] [ENSMUST00000114354] [ENSMUST00000114360] [ENSMUST00000124417] [ENSMUST00000126583] [ENSMUST00000128436] [ENSMUST00000170481]

Predicted Effect

probably benign
Transcript: ENSMUST00000033769

SMART Domains

Protein: ENSMUSP00000033769
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	3e-14	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	189	N/A	INTRINSIC
Pfam:Pkinase_Tyr	213	518	5.5e-36	PFAM
Pfam:Pkinase	213	522	4.2e-40	PFAM
low complexity region	607	616	N/A	INTRINSIC
low complexity region	680	694	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000068286

SMART Domains

Protein: ENSMUSP00000064448
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	4.4e-13	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	188	N/A	INTRINSIC
Pfam:Pkinase	212	518	5.1e-41	PFAM
Pfam:Pkinase_Tyr	212	518	6.3e-37	PFAM
low complexity region	567	576	N/A	INTRINSIC
low complexity region	640	654	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100750

SMART Domains

Protein: ENSMUSP00000098314
Gene: ENSMUSG00000031393

Domain	Start	End	E-Value	Type
low complexity region	23	44	N/A	INTRINSIC
low complexity region	65	81	N/A	INTRINSIC
MBD	92	169	7.34e-36	SMART
AT_hook	185	197	5.16e0	SMART
low complexity region	231	238	N/A	INTRINSIC
AT_hook	265	277	1.2e2	SMART
low complexity region	340	403	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000101458

SMART Domains

Protein: ENSMUSP00000099001
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	4.1e-13	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	188	N/A	INTRINSIC
Pfam:Pkinase	212	516	1.3e-40	PFAM
Pfam:Pkinase_Tyr	212	517	1.9e-36	PFAM
low complexity region	540	549	N/A	INTRINSIC
low complexity region	613	627	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000102173

Predicted Effect

probably benign
Transcript: ENSMUST00000114352

SMART Domains

Protein: ENSMUSP00000109992
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	4.4e-13	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	188	N/A	INTRINSIC
Pfam:Pkinase	212	518	5.1e-41	PFAM
Pfam:Pkinase_Tyr	212	518	6.3e-37	PFAM
low complexity region	567	576	N/A	INTRINSIC
low complexity region	640	654	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114353

SMART Domains

Protein: ENSMUSP00000109993
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	1e-10	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	188	N/A	INTRINSIC
S_TKc	212	537	6.6e-15	SMART
low complexity region	561	575	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114354

SMART Domains

Protein: ENSMUSP00000109994
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	1.5e-12	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	189	N/A	INTRINSIC
Pfam:Pkinase	213	519	6e-41	PFAM
Pfam:Pkinase_Tyr	213	519	7.4e-37	PFAM
low complexity region	568	577	N/A	INTRINSIC
low complexity region	641	655	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114360

SMART Domains

Protein: ENSMUSP00000110000
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
Pfam:Death	28	103	4.4e-13	PFAM
low complexity region	104	123	N/A	INTRINSIC
low complexity region	158	188	N/A	INTRINSIC
Pfam:Pkinase	212	518	5.1e-41	PFAM
Pfam:Pkinase_Tyr	212	518	6.3e-37	PFAM
low complexity region	567	576	N/A	INTRINSIC
low complexity region	640	654	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124417

SMART Domains

Protein: ENSMUSP00000116167
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	10	41	N/A	INTRINSIC
SCOP:d1b6cb_	48	97	6e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000124580

SMART Domains

Protein: ENSMUSP00000117379
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	49	79	N/A	INTRINSIC
SCOP:d1b6cb_	86	135	2e-14	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000126583

SMART Domains

Protein: ENSMUSP00000115508
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	261	1.7e-29	PFAM
Pfam:Pkinase_Tyr	1	261	3.2e-31	PFAM
low complexity region	310	319	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140130

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000175166

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128759

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144353

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146210

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148706

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149809

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149871

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145677

Predicted Effect

probably benign
Transcript: ENSMUST00000138397

SMART Domains

Protein: ENSMUSP00000121016
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	145	9.7e-18	PFAM
Pfam:Pkinase_Tyr	2	125	2.5e-13	PFAM
low complexity region	207	221	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000132144

SMART Domains

Protein: ENSMUSP00000117042
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
low complexity region	22	53	N/A	INTRINSIC
SCOP:d1b6cb_	60	109	2e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000128436

SMART Domains

Protein: ENSMUSP00000118570
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
SCOP:d1qpca_	63	93	3e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000148317

SMART Domains

Protein: ENSMUSP00000122519
Gene: ENSMUSG00000031392

Domain	Start	End	E-Value	Type
SCOP:d1ir3a_	32	98	1e-6	SMART
low complexity region	123	132	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000170481

SMART Domains

Protein: ENSMUSP00000127115
Gene: ENSMUSG00000031393

Domain	Start	End	E-Value	Type
low complexity region	23	44	N/A	INTRINSIC
low complexity region	65	81	N/A	INTRINSIC
MBD	92	169	7.34e-36	SMART
AT_hook	185	197	5.16e0	SMART
low complexity region	231	238	N/A	INTRINSIC
AT_hook	265	277	1.2e2	SMART
low complexity region	340	403	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.9%

Validation Efficiency

98% (112/114)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the interleukin-1 receptor-associated kinase 1, one of two putative serine/threonine kinases that become associated with the interleukin-1 receptor (IL1R) upon stimulation. This gene is partially responsible for IL1-induced upregulation of the transcription factor NF-kappa B. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene display an essentially normal phenotype. Cytokine production and response to endotoxin are attenuated however. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110043O21Rik	C	T	4: 35,226,033		probably benign	Het
AA986860	T	A	1: 130,742,403	S121T	possibly damaging	Het
Abcb9	A	G	5: 124,078,804	V450A	probably benign	Het
Abcg1	A	T	17: 31,114,261	R659S	probably benign	Het
Acad9	A	T	3: 36,088,840	N508I	possibly damaging	Het
Acrbp	T	A	6: 125,060,918	C393S	probably damaging	Het
Adcy7	T	C	8: 88,317,937	V486A	probably benign	Het
Adgrf1	G	T	17: 43,310,493	L540F	probably damaging	Het
Ap5m1	T	C	14: 49,078,828	I285T	probably benign	Het
Arhgap27	G	T	11: 103,360,949		probably benign	Het
Armc5	A	T	7: 128,240,104	E198V	possibly damaging	Het
Atp8b5	A	T	4: 43,365,955	K742M	probably benign	Het
Atp9a	T	G	2: 168,661,964	T603P	possibly damaging	Het
Bsn	A	G	9: 108,110,130	S2808P	unknown	Het
Catsper4	T	C	4: 134,226,605	N81S	probably damaging	Het
Ccl17	C	G	8: 94,810,500	T10S	probably benign	Het
Cdc123	A	T	2: 5,844,892	V6D	probably damaging	Het
Cdca2	T	C	14: 67,714,966	K14E	possibly damaging	Het
Cdh3	C	A	8: 106,539,856	T302K	probably damaging	Het
Cdh9	A	G	15: 16,850,959	M605V	probably benign	Het
Cdk4	A	G	10: 127,064,911	E144G	possibly damaging	Het
Clasp1	C	T	1: 118,543,271	A879V	probably damaging	Het
Cldn8	G	A	16: 88,562,408	H210Y	probably benign	Het
Cntn5	T	C	9: 9,970,531	D518G	probably benign	Het
Cog1	C	T	11: 113,652,290	A208V	probably damaging	Het
Col4a2	T	A	8: 11,431,337	H836Q	possibly damaging	Het
Copb1	T	C	7: 114,248,976	D108G	probably damaging	Het
Csmd3	A	T	15: 48,161,083	Y600*	probably null	Het
Cyb5r1	T	A	1: 134,407,833	H164Q	probably benign	Het
Dkc1	A	G	X: 75,100,992	I215V	probably benign	Het
Enpep	A	G	3: 129,303,713		probably null	Het
Fam71b	T	A	11: 46,404,813	M4K	possibly damaging	Het
Fbln7	A	G	2: 128,894,886	Y311C	probably damaging	Het
Fign	A	C	2: 63,979,261	L555R	probably damaging	Het
Fkbp7	A	T	2: 76,671,688		probably benign	Het
Fmn2	T	C	1: 174,503,162	S373P	unknown	Het
Frmd4b	C	T	6: 97,295,666	D868N	possibly damaging	Het
Gfpt2	A	G	11: 49,823,737	N321S	probably benign	Het
Glmn	G	T	5: 107,561,075	T372K	probably damaging	Het
Gm26602	C	T	10: 79,910,974		probably benign	Het
Gm6797	A	G	X: 8,639,694		noncoding transcript	Het
Gpat3	T	A	5: 100,893,456	F383L	probably damaging	Het
Grrp1	A	G	4: 134,251,436	S244P	probably damaging	Het
H2-M11	C	T	17: 36,548,150	T194I	possibly damaging	Het
Hcn1	C	T	13: 117,657,015	H268Y	probably benign	Het
Hectd4	G	T	5: 121,325,251	C2345F	possibly damaging	Het
Htt	A	G	5: 34,820,080	D770G	probably benign	Het
Ints3	T	C	3: 90,408,510	T316A	possibly damaging	Het
Ipo9	A	G	1: 135,394,169	F608L	probably benign	Het
Jam2	G	A	16: 84,812,952	V151M	probably damaging	Het
Lag3	T	A	6: 124,904,545	Q488L	possibly damaging	Het
Large2	A	T	2: 92,367,558	L266Q	probably benign	Het
Lrp3	T	G	7: 35,203,940	D327A	probably damaging	Het
Mamstr	C	A	7: 45,644,692		probably benign	Het
Mettl14	G	A	3: 123,369,414		probably benign	Het
Miga1	A	G	3: 152,322,475	V139A	probably damaging	Het
Mthfd2l	A	C	5: 90,948,911	R130S	probably benign	Het
Myo1b	A	G	1: 51,757,973	I970T	possibly damaging	Het
Nat10	C	A	2: 103,732,170	W607L	probably damaging	Het
Nop56	A	G	2: 130,278,273	T183A	probably benign	Het
Olfr1258	A	G	2: 89,930,664	Y285C	possibly damaging	Het
Olfr239	A	G	17: 33,199,393	H115R	probably benign	Het
Olfr291	T	A	7: 84,856,904	Y178*	probably null	Het
Olfr464	T	A	11: 87,914,310	M199L	probably benign	Het
Olfr592	A	G	7: 103,187,102	Y167C	probably benign	Het
Olfr710	A	T	7: 106,944,945	S19T	probably benign	Het
Pcdhb12	T	C	18: 37,436,949	F383L	probably damaging	Het
Pde4dip	C	A	3: 97,695,005	D2252Y	probably damaging	Het
Peg10	GC	GCTCC	6: 4,756,452		probably benign	Het
Plscr2	T	G	9: 92,287,770	L91R	probably benign	Het
Plxnc1	T	A	10: 94,794,444	Y1531F	probably damaging	Het
Ptprq	A	T	10: 107,685,182	F710I	probably benign	Het
Rad51ap2	A	G	12: 11,456,551	E158G	probably damaging	Het
Rasip1	T	A	7: 45,627,823	H18Q	possibly damaging	Het
Rcsd1	T	A	1: 165,655,924	N166I	probably damaging	Het
Ripor1	T	A	8: 105,617,785	I517K	possibly damaging	Het
Ryr2	T	A	13: 11,824,369	H506L	probably benign	Het
Secisbp2l	C	T	2: 125,740,737	G933D	possibly damaging	Het
Sept14	T	C	5: 129,693,026	D202G	possibly damaging	Het
Siglec1	A	T	2: 131,073,411	L1420Q	possibly damaging	Het
Slc22a29	T	A	19: 8,161,584	I505F	possibly damaging	Het
Sorcs1	T	A	19: 50,182,669	Y927F	probably benign	Het
Spats2	T	G	15: 99,180,722	M191R	possibly damaging	Het
Sycp1	C	T	3: 102,922,462		probably null	Het
T2	A	G	17: 8,391,016	E99G	possibly damaging	Het
Taf3	G	A	2: 10,048,564		probably benign	Het
Tnfsf10	A	T	3: 27,335,579	N263I	probably damaging	Het
Treml2	A	T	17: 48,308,175	R229S	probably benign	Het
Trmt13	T	C	3: 116,589,755	K125E	probably damaging	Het
Ttc9	G	T	12: 81,631,601	C66F	probably damaging	Het
Vmn2r63	C	T	7: 42,928,120	M331I	probably benign	Het
Zfp353-ps	T	C	8: 42,082,214		noncoding transcript	Het
Zfp932	A	T	5: 110,009,894	H486L	probably damaging	Het

Other mutations in Irak1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0830:Irak1	UTSW	X	74016583	missense	probably damaging	0.98
R2114:Irak1	UTSW	X	74022612	missense	possibly damaging	0.89
R2115:Irak1	UTSW	X	74022612	missense	possibly damaging	0.89
R2117:Irak1	UTSW	X	74022612	missense	possibly damaging	0.89
R2202:Irak1	UTSW	X	74017138	missense	probably damaging	0.99
R2205:Irak1	UTSW	X	74017138	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CTGTTCCACCTCTGTTAAGAAGC -3'
(R):5'- GAGATTTCCCAAGGCACCTG -3'

Sequencing Primer
(F):5'- AAGAAGCTCTGTTTCACCATAGTCC -3'
(R):5'- GGCACCTGCAACTTCTCTGAAG -3'

Posted On

2015-10-08