Mutagenetix > Incidental Mutation

Incidental Mutation 'R4647:Tnn'

350315

Institutional Source

Beutler Lab

Gene Symbol

Tnn

Ensembl Gene

ENSMUSG00000026725

Gene Name

tenascin N

Synonyms

Tnw, tenascin-W

MMRRC Submission

041908-MU

Accession Numbers

Genbank: NM_177839.3; Ensembl: ENSMUST00000039178

Essential gene?

Possibly non essential (E-score: 0.321) question?

Stock #

R4647 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

160085029-160153580 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 160146042 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 252 (M252V)

Ref Sequence

ENSEMBL: ENSMUSP00000115685 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039178] [ENSMUST00000131919]

AlphaFold

Q80Z71

Predicted Effect

probably benign
Transcript: ENSMUST00000039178
AA Change: M252V

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000039452
Gene: ENSMUSG00000026725
AA Change: M252V

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
coiled coil region	100	132	N/A	INTRINSIC
EGF_like	170	198	3.5e1	SMART
EGF	201	229	2.29e1	SMART
EGF_like	232	260	2.86e1	SMART
FN3	262	341	1.81e-8	SMART
FN3	351	432	1.08e-6	SMART
FN3	443	521	1.19e-8	SMART
FN3	531	608	2.64e-10	SMART
FN3	619	696	1.6e-9	SMART
FN3	707	784	9.04e-9	SMART
FN3	795	872	7.34e-9	SMART
FN3	883	960	9.04e-9	SMART
FN3	971	1048	1.07e-10	SMART
FN3	1059	1136	7.57e-11	SMART
FN3	1147	1224	4.59e-10	SMART
FN3	1235	1312	1.95e-4	SMART
FBG	1327	1539	1.16e-114	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000131919
AA Change: M252V

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000115685
Gene: ENSMUSG00000026725
AA Change: M252V

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
coiled coil region	100	132	N/A	INTRINSIC
EGF_like	170	198	3.5e1	SMART
EGF	201	229	2.29e1	SMART
EGF_like	232	260	2.86e1	SMART
FN3	262	341	1.81e-8	SMART
FN3	351	432	1.08e-6	SMART
FN3	443	521	1.19e-8	SMART
FN3	531	608	2.64e-10	SMART
FN3	619	696	1.6e-9	SMART
FN3	707	784	9.04e-9	SMART
FN3	795	872	7.57e-11	SMART
FN3	883	960	4.59e-10	SMART
FN3	971	1048	1.95e-4	SMART
FBG	1063	1275	1.16e-114	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

Allele List at MGI

All alleles(2) : Targeted, other(2)

Other mutations in this stock

Total: 139 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700031F05Rik	G	T	X: 102,860,909	N132K	possibly damaging	Het
Aatf	T	C	11: 84,471,197	D313G	possibly damaging	Het
Abcb11	T	G	2: 69,285,271	D583A	probably damaging	Het
Adgrv1	A	T	13: 81,528,795	Y1252*	probably null	Het
Aim2	T	C	1: 173,455,524		silent	Het
Angpt1	T	A	15: 42,676,184	Y93F	probably benign	Het
Ankrd27	C	T	7: 35,638,234	P991L	probably benign	Het
Ap1s3	C	T	1: 79,614,203		probably null	Het
Apbb1	A	C	7: 105,565,538	S500A	probably benign	Het
Arc	G	A	15: 74,671,525	A283V	probably damaging	Het
Bbs10	A	G	10: 111,301,134	K703E	probably benign	Het
C1galt1c1	A	T	X: 38,631,472	S216T	probably benign	Het
C1qtnf4	T	A	2: 90,889,652	S90T	probably damaging	Het
Cachd1	A	T	4: 100,953,130	K310*	probably null	Het
Calhm1	A	G	19: 47,143,801	L125P	probably damaging	Het
Carmil1	G	A	13: 24,137,179	L278F	probably damaging	Het
Ccar1	A	T	10: 62,747,417	Y972*	probably null	Het
Cd163	C	T	6: 124,320,621	P909S	probably damaging	Het
Cd44	T	A	2: 102,837,929	H268L	possibly damaging	Het
Cdkl2	A	T	5: 92,017,213	L517Q	probably damaging	Het
Cep68	G	T	11: 20,239,349	N554K	probably benign	Het
Ces1d	A	G	8: 93,166,410	W515R	probably damaging	Het
Clca4b	A	C	3: 144,928,525	H102Q	probably benign	Het
Cldn15	T	A	5: 136,974,483	I142N	probably damaging	Het
Cmklr1	T	A	5: 113,614,640	D100V	probably damaging	Het
Crocc2	G	A	1: 93,168,794	V24M	possibly damaging	Het
D430041D05Rik	G	A	2: 104,258,443	P63S	probably damaging	Het
Ddx39	A	T	8: 83,722,273	H259L	probably benign	Het
Dhx16	C	G	17: 35,885,635	A565G	probably benign	Het
Dimt1	A	T	13: 106,947,655	D50V	probably benign	Het
Dock9	A	T	14: 121,586,246	L1428H	probably damaging	Het
Dpp4	G	T	2: 62,334,605	T700K	probably damaging	Het
E030030I06Rik	T	A	10: 22,148,845	R56S	unknown	Het
Eea1	A	G	10: 96,028,393	T925A	probably benign	Het
Ext1	A	G	15: 53,089,987	S494P	possibly damaging	Het
Fam171a1	G	A	2: 3,220,291	E140K	probably damaging	Het
Fam19a5	T	G	15: 87,720,582	S115A	probably damaging	Het
Fgfr3	C	T	5: 33,734,986		probably benign	Het
Gabra6	A	G	11: 42,307,372	I407T	probably damaging	Het
Gm13089	T	C	4: 143,699,344	M10V	probably benign	Het
Gm16223	C	A	5: 42,214,611	L115M	unknown	Het
Gm4781	G	T	10: 100,397,000		noncoding transcript	Het
Gm9772	T	A	17: 22,007,032	I70F	possibly damaging	Het
Gpr107	T	A	2: 31,210,501	F497Y	probably damaging	Het
Grm7	T	A	6: 110,914,383	Y192*	probably null	Het
Gtf2ird2	G	A	5: 134,216,192	A431T	probably damaging	Het
H2-K2	T	A	17: 33,976,015		noncoding transcript	Het
H2-M11	T	A	17: 36,547,991	V141D	probably benign	Het
Hmcn1	A	G	1: 150,675,511		probably null	Het
Hmcn2	A	T	2: 31,399,019	Q2280L	possibly damaging	Het
Hmg20b	T	A	10: 81,348,582	Q129L	probably damaging	Het
Igfbp7	T	A	5: 77,351,296	Q285L	possibly damaging	Het
Igkv13-85	T	A	6: 68,930,736		probably benign	Het
Inpp5e	A	T	2: 26,407,914	L225H	probably benign	Het
Inpp5f	T	A	7: 128,659,109	V91E	possibly damaging	Het
Khdc3	A	G	9: 73,102,586	E26G	possibly damaging	Het
Klra5	T	A	6: 129,899,376	D156V	probably damaging	Het
Kmo	C	A	1: 175,659,774	Y430*	probably null	Het
Lbx2	A	G	6: 83,088,046	D188G	probably damaging	Het
Lcorl	A	T	5: 45,733,589	L474*	probably null	Het
Lnx1	C	T	5: 74,610,796	V350I	probably benign	Het
Lrrc45	T	A	11: 120,719,121	S464T	probably benign	Het
Ltc4s	T	A	11: 50,237,225	T61S	probably benign	Het
Luc7l3	A	C	11: 94,309,641	N50K	probably damaging	Het
Ly75	G	A	2: 60,308,278	T1415M	probably damaging	Het
Macf1	T	C	4: 123,473,627	E2447G	probably benign	Het
Map3k21	A	G	8: 125,942,111	D812G	probably benign	Het
Mbtd1	C	T	11: 93,924,611	H342Y	probably damaging	Het
Mest	C	T	6: 30,745,110	R226*	probably null	Het
Mindy1	A	T	3: 95,282,743		probably benign	Het
Mmp13	A	T	9: 7,274,233	D180V	probably damaging	Het
Mn1	A	G	5: 111,420,083	T640A	probably benign	Het
Msi2	T	C	11: 88,718,038	H18R	possibly damaging	Het
Myo18a	T	A	11: 77,817,950	V61E	probably damaging	Het
Myo19	T	G	11: 84,894,642	I237S	probably damaging	Het
Ncaph2	T	A	15: 89,370,432	L416Q	probably damaging	Het
Nlrp1a	T	A	11: 71,097,126		probably null	Het
Olfr1450	A	G	19: 12,954,077	I163V	probably benign	Het
Olfr282	G	T	15: 98,437,576	V36F	probably benign	Het
Olfr353	A	G	2: 36,890,651	F66L	probably benign	Het
Olfr559	A	G	7: 102,724,092	S133P	probably damaging	Het
Olfr710	A	T	7: 106,944,340	N220K	probably benign	Het
Padi2	T	C	4: 140,944,446	F495S	probably damaging	Het
Pan3	G	T	5: 147,527,203	D535Y	probably damaging	Het
Paqr3	T	A	5: 97,108,210	R102*	probably null	Het
Patl1	T	A	19: 11,914,434	D34E	probably damaging	Het
Pcdha6	A	T	18: 36,969,136	T461S	probably damaging	Het
Pcnt	T	C	10: 76,354,213	S2830G	probably benign	Het
Pdgfa	G	A	5: 138,979,184	T181I	probably benign	Het
Pds5a	C	A	5: 65,656,318	D275Y	probably damaging	Het
Plod2	T	A	9: 92,605,450	Y607*	probably null	Het
Pomt2	G	T	12: 87,118,083	T517K	possibly damaging	Het
Prdm1	T	C	10: 44,439,690	T817A	probably damaging	Het
Prdm2	T	C	4: 143,132,955	D1255G	possibly damaging	Het
Prex2	T	A	1: 11,162,285	C859S	probably damaging	Het
Ralgapa2	A	T	2: 146,387,629	M1077K	possibly damaging	Het
Ralgds	T	C	2: 28,545,520		probably null	Het
Rasa3	T	C	8: 13,588,865	E314G	probably null	Het
Rasa4	T	A	5: 136,101,363	D324E	probably damaging	Het
Rbm46	A	T	3: 82,864,458	D283E	probably benign	Het
Rnf139	A	T	15: 58,899,987	L620F	probably benign	Het
Rptor	T	A	11: 119,891,163	N1105K	probably benign	Het
Scaf11	A	T	15: 96,420,100		probably null	Het
Sectm1b	A	T	11: 121,055,934	V45E	probably damaging	Het
Selenon	A	G	4: 134,545,657	W157R	probably damaging	Het
Sema3b	C	A	9: 107,599,051	R657L	possibly damaging	Het
Setd1b	C	T	5: 123,148,112	A407V	unknown	Het
Sh3tc1	C	T	5: 35,706,318	A842T	probably damaging	Het
Shank2	A	G	7: 144,411,829	E1268G	probably damaging	Het
Shmt1	G	A	11: 60,801,465	S155F	probably damaging	Het
Sim2	A	G	16: 94,123,526	E510G	possibly damaging	Het
Slc25a46	A	T	18: 31,600,192	I168N	probably damaging	Het
Slc26a4	T	G	12: 31,540,526	D376A	possibly damaging	Het
Slfn14	G	T	11: 83,276,658	A677E	probably benign	Het
Slk	G	T	19: 47,620,274	Q555H	possibly damaging	Het
Synj1	A	T	16: 90,973,989	D517E	probably damaging	Het
Syvn1	G	A	19: 6,051,474	R440Q	probably benign	Het
Tas2r118	A	T	6: 23,969,468	I198N	probably damaging	Het
Tdh	A	G	14: 63,493,756	L323P	possibly damaging	Het
Tet2	A	T	3: 133,488,082	M197K	probably benign	Het
Timeless	A	G	10: 128,239,956	Y19C	possibly damaging	Het
Trdn	G	T	10: 33,195,981	E215*	probably null	Het
Trmt1l	G	T	1: 151,457,881	V712F	possibly damaging	Het
Tti1	T	C	2: 158,007,020		probably benign	Het
Ulk4	T	C	9: 121,141,852	H1018R	probably benign	Het
Vim	A	T	2: 13,582,495	H461L	probably benign	Het
Vmn2r118	T	A	17: 55,610,665	E282D	probably damaging	Het
Vmn2r31	T	A	7: 7,384,368	I735F	probably damaging	Het
Vmn2r88	A	G	14: 51,418,793	M829V	probably benign	Het
Washc4	T	A	10: 83,574,543	M665K	possibly damaging	Het
Wbp2	T	A	11: 116,082,381	M67L	probably benign	Het
Wdr81	T	A	11: 75,445,988	E1525V	probably damaging	Het
Xbp1	A	G	11: 5,522,006	D44G	probably damaging	Het
Zfhx4	T	G	3: 5,399,281	F1500V	probably damaging	Het
Zfp286	A	C	11: 62,783,733	Y95*	probably null	Het
Zfp872	A	G	9: 22,199,761	T178A	possibly damaging	Het
Zkscan5	A	G	5: 145,218,830	H364R	possibly damaging	Het
Zp3r	A	T	1: 130,577,960	Y422N	probably damaging	Het
Zscan10	C	T	17: 23,610,340	R542C	probably benign	Het

Other mutations in Tnn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00095:Tnn	APN	1	160125451	missense	possibly damaging	0.65
IGL00433:Tnn	APN	1	160098206	splice site	probably benign
IGL00858:Tnn	APN	1	160088392	critical splice donor site	probably null
IGL00939:Tnn	APN	1	160147530	missense	probably damaging	1.00
IGL01569:Tnn	APN	1	160120554	missense	possibly damaging	0.51
IGL01591:Tnn	APN	1	160125574	missense	probably damaging	1.00
IGL01628:Tnn	APN	1	160147602	missense	possibly damaging	0.89
IGL01811:Tnn	APN	1	160107135	missense	probably damaging	1.00
IGL01813:Tnn	APN	1	160088438	missense	probably damaging	1.00
IGL02340:Tnn	APN	1	160145205	missense	probably benign	0.00
IGL02488:Tnn	APN	1	160140593	missense	probably benign	0.21
IGL02535:Tnn	APN	1	160122652	splice site	probably null
IGL02563:Tnn	APN	1	160114553	missense	probably damaging	1.00
IGL02572:Tnn	APN	1	160086107	missense	probably damaging	1.00
IGL02740:Tnn	APN	1	160140777	splice site	probably benign
IGL02818:Tnn	APN	1	160116278	missense	possibly damaging	0.86
IGL03284:Tnn	APN	1	160125452	missense	probably benign	0.01
1mM(1):Tnn	UTSW	1	160097341	missense	probably damaging	1.00
PIT4305001:Tnn	UTSW	1	160086077	missense	possibly damaging	0.91
R0023:Tnn	UTSW	1	160104928	missense	probably benign	0.00
R0234:Tnn	UTSW	1	160088466	missense	probably damaging	1.00
R0234:Tnn	UTSW	1	160088466	missense	probably damaging	1.00
R0316:Tnn	UTSW	1	160120567	missense	possibly damaging	0.93
R0492:Tnn	UTSW	1	160120757	missense	probably damaging	0.99
R0547:Tnn	UTSW	1	160116337	intron	probably benign
R1067:Tnn	UTSW	1	160125398	missense	probably damaging	1.00
R1563:Tnn	UTSW	1	160125415	missense	probably damaging	1.00
R1565:Tnn	UTSW	1	160097265	missense	probably damaging	1.00
R1615:Tnn	UTSW	1	160118408	missense	possibly damaging	0.93
R1637:Tnn	UTSW	1	160147600	missense	probably damaging	1.00
R1707:Tnn	UTSW	1	160145144	missense	probably damaging	1.00
R1758:Tnn	UTSW	1	160147584	missense	possibly damaging	0.61
R1797:Tnn	UTSW	1	160140688	missense	probably damaging	1.00
R1847:Tnn	UTSW	1	160116182	missense	possibly damaging	0.51
R1925:Tnn	UTSW	1	160097229	missense	probably damaging	1.00
R2182:Tnn	UTSW	1	160140600	splice site	probably null
R2196:Tnn	UTSW	1	160097228	nonsense	probably null
R2225:Tnn	UTSW	1	160147465	missense	probably damaging	1.00
R2227:Tnn	UTSW	1	160147465	missense	probably damaging	1.00
R2286:Tnn	UTSW	1	160110509	missense	possibly damaging	0.89
R2850:Tnn	UTSW	1	160139287	missense	probably benign	0.00
R3110:Tnn	UTSW	1	160116286	missense	possibly damaging	0.71
R3111:Tnn	UTSW	1	160107055	missense	probably damaging	0.98
R3112:Tnn	UTSW	1	160116286	missense	possibly damaging	0.71
R3729:Tnn	UTSW	1	160146240	missense	probably damaging	1.00
R4183:Tnn	UTSW	1	160097355	missense	probably damaging	1.00
R4439:Tnn	UTSW	1	160116080	missense	probably benign
R4441:Tnn	UTSW	1	160116080	missense	probably benign
R4588:Tnn	UTSW	1	160145111	missense	probably benign	0.25
R4646:Tnn	UTSW	1	160146042	missense	probably benign
R4648:Tnn	UTSW	1	160146042	missense	probably benign
R4701:Tnn	UTSW	1	160147768	missense	possibly damaging	0.72
R4703:Tnn	UTSW	1	160116245	missense	possibly damaging	0.84
R4737:Tnn	UTSW	1	160146089	missense	probably damaging	1.00
R4801:Tnn	UTSW	1	160145033	missense	possibly damaging	0.90
R4802:Tnn	UTSW	1	160145033	missense	possibly damaging	0.90
R4868:Tnn	UTSW	1	160130873	missense	possibly damaging	0.64
R4977:Tnn	UTSW	1	160120618	missense	probably damaging	1.00
R5011:Tnn	UTSW	1	160126379	missense	possibly damaging	0.89
R5026:Tnn	UTSW	1	160146137	missense	probably benign	0.00
R5027:Tnn	UTSW	1	160145211	missense	probably damaging	1.00
R5049:Tnn	UTSW	1	160140738	missense	probably benign	0.00
R5119:Tnn	UTSW	1	160120552	missense	probably damaging	0.98
R5128:Tnn	UTSW	1	160122894	missense	probably damaging	0.98
R5234:Tnn	UTSW	1	160144999	missense	possibly damaging	0.95
R5398:Tnn	UTSW	1	160147522	missense	probably benign	0.00
R5424:Tnn	UTSW	1	160122702	missense	possibly damaging	0.69
R5452:Tnn	UTSW	1	160110261	missense	probably benign	0.13
R5466:Tnn	UTSW	1	160120536	missense	possibly damaging	0.93
R6022:Tnn	UTSW	1	160110358	missense	probably benign	0.00
R6062:Tnn	UTSW	1	160098278	missense	probably damaging	1.00
R6086:Tnn	UTSW	1	160086120	missense	probably damaging	1.00
R6132:Tnn	UTSW	1	160146071	missense	probably damaging	0.96
R6324:Tnn	UTSW	1	160145204	missense	probably damaging	0.96
R6455:Tnn	UTSW	1	160114719	missense	probably damaging	1.00
R6563:Tnn	UTSW	1	160088398	missense	probably damaging	1.00
R6650:Tnn	UTSW	1	160114583	missense	probably damaging	1.00
R6806:Tnn	UTSW	1	160120708	missense	possibly damaging	0.95
R6810:Tnn	UTSW	1	160104842	missense	probably damaging	1.00
R7157:Tnn	UTSW	1	160126377	nonsense	probably null
R7243:Tnn	UTSW	1	160107117	missense	probably benign	0.07
R7340:Tnn	UTSW	1	160146022	missense	probably damaging	0.98
R7472:Tnn	UTSW	1	160110347	missense	probably benign	0.12
R7502:Tnn	UTSW	1	160110359	missense	probably benign	0.00
R7527:Tnn	UTSW	1	160118504	missense	possibly damaging	0.51
R7608:Tnn	UTSW	1	160088414	nonsense	probably null
R7746:Tnn	UTSW	1	160114685	missense	probably damaging	0.97
R8096:Tnn	UTSW	1	160122841	missense	probably damaging	1.00
R8136:Tnn	UTSW	1	160107060	missense	probably damaging	0.96
R8191:Tnn	UTSW	1	160125518	missense	probably damaging	1.00
R8334:Tnn	UTSW	1	160118483	missense	probably damaging	1.00
R8335:Tnn	UTSW	1	160118483	missense	probably damaging	1.00
R8337:Tnn	UTSW	1	160118483	missense	probably damaging	1.00
R8338:Tnn	UTSW	1	160118483	missense	probably damaging	1.00
R8427:Tnn	UTSW	1	160130686	missense	probably damaging	0.99
R8433:Tnn	UTSW	1	160097220	missense	possibly damaging	0.81
R8479:Tnn	UTSW	1	160122827	missense	probably benign	0.06
R8505:Tnn	UTSW	1	160146023	missense	probably damaging	0.98
R8554:Tnn	UTSW	1	160110416	missense	probably damaging	1.00
R8717:Tnn	UTSW	1	160116276	missense	possibly damaging	0.51
R8850:Tnn	UTSW	1	160110244	critical splice donor site	probably null
R8928:Tnn	UTSW	1	160125529	missense	probably damaging	1.00
R9209:Tnn	UTSW	1	160126416	missense	probably benign	0.02
X0019:Tnn	UTSW	1	160086146	missense	probably damaging	1.00
Z1176:Tnn	UTSW	1	160146293	missense	probably benign
Z1177:Tnn	UTSW	1	160126527	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GCATTCTATCAGAATCAGGACCA -3'
(R):5'- TGTGTGACGCGCCCTATGT -3'

Sequencing Primer
(F):5'- GCAGGAGACCCAGGACTTTATTC -3'
(R):5'- CCTATGTGGGGGTCGACTGC -3'

Posted On

2015-10-08