Mutagenetix > Incidental Mutation

Incidental Mutation 'R4613:Depdc1b'

350994

Institutional Source

Beutler Lab

Gene Symbol

Depdc1b

Ensembl Gene

ENSMUSG00000021697

Gene Name

DEP domain containing 1B

Synonyms

XTP1

MMRRC Submission

041824-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.110) question?

Stock #

R4613 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

108316332-108407782 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 108363643 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 230 (V230A)

Ref Sequence

ENSEMBL: ENSMUSP00000131707 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000051594] [ENSMUST00000163307] [ENSMUST00000171178]

AlphaFold

Q8BH88

Predicted Effect

probably damaging
Transcript: ENSMUST00000051594
AA Change: V230A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000059291
Gene: ENSMUSG00000021697
AA Change: V230A

Domain	Start	End	E-Value	Type
DEP	24	108	4.36e-20	SMART
Pfam:RhoGAP	267	347	8.3e-10	PFAM
low complexity region	464	480	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000163307
AA Change: V230A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000131707
Gene: ENSMUSG00000021697
AA Change: V230A

Domain	Start	End	E-Value	Type
DEP	24	108	4.36e-20	SMART
Pfam:RhoGAP	264	347	7.9e-10	PFAM
low complexity region	464	480	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000167413

Predicted Effect

probably damaging
Transcript: ENSMUST00000171178
AA Change: V230A

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000132972
Gene: ENSMUSG00000021697
AA Change: V230A

Domain	Start	End	E-Value	Type
DEP	24	108	4.36e-20	SMART
Pfam:RhoGAP	264	347	9.1e-10	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172402

Coding Region Coverage

1x: 99.4%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9830107B12Rik	A	T	17: 48,128,557	L130I	probably benign	Het
Abca9	A	G	11: 110,144,784	V670A	probably benign	Het
Adad1	A	G	3: 37,092,033	N517D	probably damaging	Het
Ankle2	T	C	5: 110,231,379	L48P	probably benign	Het
Aoc3	A	T	11: 101,337,659		probably benign	Het
Areg	A	G	5: 91,143,504	K102R	probably benign	Het
Bmp1	T	C	14: 70,508,523	T167A	probably damaging	Het
C4b	C	T	17: 34,734,551	G986D	probably benign	Het
Caml	G	T	13: 55,625,142	G200C	probably damaging	Het
Ccdc40	A	C	11: 119,231,532	R53S	probably benign	Het
Cdh22	T	A	2: 165,143,656	I337L	probably benign	Het
Col12a1	A	T	9: 79,647,601	V2065D	probably benign	Het
Copg2	A	G	6: 30,811,596	S591P	probably benign	Het
Cyp2d34	G	A	15: 82,616,325	P438S	probably damaging	Het
Dchs1	T	C	7: 105,772,724	D163G	probably damaging	Het
Depdc5	T	A	5: 32,975,446	L1300H	probably damaging	Het
Dnah10	G	T	5: 124,762,869		probably null	Het
Dsc2	A	T	18: 20,041,819	D466E	probably damaging	Het
Dthd1	A	G	5: 62,827,068	D372G	probably damaging	Het
Eogt	G	T	6: 97,134,304	Q199K	probably benign	Het
Epha6	C	A	16: 59,666,597	R1029L	possibly damaging	Het
Eppin	C	A	2: 164,589,323	E128*	probably null	Het
Fam102b	A	T	3: 109,027,255	F23I	probably benign	Het
Fam160b1	C	A	19: 57,371,187	P53Q	probably damaging	Het
Fgf20	T	C	8: 40,286,611	R33G	probably benign	Het
Fgg	A	G	3: 83,010,090	N142S	probably damaging	Het
Gba	C	T	3: 89,208,644		probably null	Het
Gli2	A	G	1: 118,837,511	V970A	probably damaging	Het
Gramd1b	A	T	9: 40,307,993	V508D	probably damaging	Het
Gucy2c	T	A	6: 136,708,321	D898V	probably damaging	Het
Kcnj15	T	C	16: 95,295,794	Y92H	probably damaging	Het
L3mbtl3	A	T	10: 26,282,795	S652T	unknown	Het
Ldb2	G	T	5: 44,476,551	Q326K	probably benign	Het
Lipi	C	A	16: 75,560,801	R292L	probably benign	Het
Lrrc36	G	A	8: 105,449,614	V207I	possibly damaging	Het
Lyplal1	C	T	1: 186,088,752	G166D	probably benign	Het
Map1b	A	T	13: 99,430,302	Y1970*	probably null	Het
Map2	A	G	1: 66,425,469	N287D	probably damaging	Het
Map3k11	A	T	19: 5,697,470	Q578L	probably benign	Het
Map3k11	G	T	19: 5,697,471	Q578H	probably damaging	Het
Map4k4	G	A	1: 40,017,191	S1012N	probably benign	Het
Mapk13	A	T	17: 28,769,452	N15Y	probably damaging	Het
Mapk15	G	A	15: 75,995,910	A125T	probably damaging	Het
Mrgprb1	C	A	7: 48,447,708	R152L	possibly damaging	Het
Muc5ac	T	G	7: 141,791,103	Y104D	possibly damaging	Het
Myo1h	A	G	5: 114,348,379	N566S	possibly damaging	Het
Myo1h	C	A	5: 114,351,676	H647Q	probably benign	Het
Neo1	A	G	9: 58,889,041	I1201T	possibly damaging	Het
Nlgn1	T	C	3: 25,436,022	T514A	probably benign	Het
Olfr120	A	G	17: 37,726,696	Y224C	probably damaging	Het
Olfr533	A	T	7: 140,467,068	Y289F	probably damaging	Het
Olfr8	A	G	10: 78,956,065	N287D	probably damaging	Het
Olfr985	T	A	9: 40,127,722	K80*	probably null	Het
Orc2	A	T	1: 58,500,309	L57*	probably null	Het
Otoa	G	A	7: 121,145,568	V850M	probably damaging	Het
Pcnx3	T	C	19: 5,667,219	T1579A	possibly damaging	Het
Pde5a	A	T	3: 122,823,093	Y564F	probably damaging	Het
Pdxk	A	C	10: 78,447,919	I147S	probably damaging	Het
Pfdn5	A	G	15: 102,328,752	D108G	probably benign	Het
Pink1	T	C	4: 138,317,310	D342G	probably damaging	Het
Prkacb	A	T	3: 146,737,998	V336E	probably damaging	Het
Ptpro	C	A	6: 137,416,836	S13*	probably null	Het
Rfng	A	G	11: 120,782,650	L215P	probably damaging	Het
Rpn2	T	C	2: 157,302,425	F336L	possibly damaging	Het
Sacs	A	G	14: 61,211,797		probably null	Het
Sirpb1a	T	A	3: 15,417,037	Y77F	probably benign	Het
Skiv2l2	C	A	13: 112,921,739	E53*	probably null	Het
Slc30a8	A	G	15: 52,333,575	D294G	probably benign	Het
Sox13	T	C	1: 133,388,934	I212V	probably benign	Het
Srebf2	T	A	15: 82,185,348	I657N	possibly damaging	Het
Srsf6	C	A	2: 162,933,709	T146K	probably benign	Het
Strn4	T	C	7: 16,824,163	V162A	possibly damaging	Het
Sulf2	T	C	2: 166,132,605	D53G	probably damaging	Het
Tbc1d8	T	A	1: 39,372,708	I1016F	probably damaging	Het
Tfrc	G	T	16: 32,618,657	A278S	probably damaging	Het
Tnrc6a	T	G	7: 123,184,289		probably null	Het
Vmn1r83	T	C	7: 12,321,768	I121V	probably benign	Het
Vps13d	T	C	4: 145,131,655	S2200G	possibly damaging	Het
Washc2	T	A	6: 116,229,269	D397E	probably damaging	Het
Wipf3	T	C	6: 54,485,555	L250P	probably damaging	Het
Xirp1	A	G	9: 120,019,682	F45S	probably damaging	Het
Xpo5	A	G	17: 46,236,963	T910A	probably benign	Het
Zfp235	T	C	7: 24,141,676	Y507H	probably damaging	Het

Other mutations in Depdc1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00475:Depdc1b	APN	13	108357440	missense	probably benign
IGL01071:Depdc1b	APN	13	108357441	missense	probably benign
IGL01778:Depdc1b	APN	13	108362327	missense	probably benign	0.02
IGL02368:Depdc1b	APN	13	108363579	missense	probably benign
R0310:Depdc1b	UTSW	13	108373841	missense	possibly damaging	0.88
R0483:Depdc1b	UTSW	13	108373848	missense	probably benign	0.03
R0650:Depdc1b	UTSW	13	108323909	missense	probably damaging	1.00
R0900:Depdc1b	UTSW	13	108362260	missense	possibly damaging	0.68
R0932:Depdc1b	UTSW	13	108386835	missense	probably benign	0.23
R1757:Depdc1b	UTSW	13	108323948	missense	probably damaging	1.00
R2174:Depdc1b	UTSW	13	108362253	nonsense	probably null
R2308:Depdc1b	UTSW	13	108373841	missense	possibly damaging	0.88
R3941:Depdc1b	UTSW	13	108368836	missense	probably damaging	1.00
R4213:Depdc1b	UTSW	13	108388691	missense	probably damaging	1.00
R4771:Depdc1b	UTSW	13	108382900	missense	probably benign	0.14
R5224:Depdc1b	UTSW	13	108384820	missense	probably damaging	1.00
R5292:Depdc1b	UTSW	13	108373842	missense	probably damaging	0.99
R6241:Depdc1b	UTSW	13	108324119	missense	possibly damaging	0.78
R6399:Depdc1b	UTSW	13	108324046	missense	probably damaging	1.00
R6418:Depdc1b	UTSW	13	108357422	missense	probably damaging	0.97
R7078:Depdc1b	UTSW	13	108386971	missense	possibly damaging	0.93
R7120:Depdc1b	UTSW	13	108362247	missense	probably benign	0.01
R7127:Depdc1b	UTSW	13	108323928	missense	probably damaging	1.00
R7209:Depdc1b	UTSW	13	108382855	missense	possibly damaging	0.55
R7385:Depdc1b	UTSW	13	108363632	missense	probably damaging	1.00
R8098:Depdc1b	UTSW	13	108324059	missense	probably damaging	0.97
R8552:Depdc1b	UTSW	13	108357425	missense	probably damaging	1.00
R8825:Depdc1b	UTSW	13	108384782	missense	possibly damaging	0.56
R8975:Depdc1b	UTSW	13	108388560	missense	probably null	0.00
R9648:Depdc1b	UTSW	13	108323910	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGCACATGCTGGCTCACATG -3'
(R):5'- TGCTAAATCCTAACCCTGGAC -3'

Sequencing Primer
(F):5'- ATGCTGGCTCACATGTGTACAC -3'
(R):5'- AACCCTGGACACTCATCTTCTTATG -3'

Posted On

2015-10-08