Incidental Mutation 'R4616:Vmn1r209'
ID 351059
Institutional Source Beutler Lab
Gene Symbol Vmn1r209
Ensembl Gene ENSMUSG00000071491
Gene Name vomeronasal 1 receptor 209
Synonyms Gm11315
MMRRC Submission 041827-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.096) question?
Stock # R4616 (G1)
Quality Score 225
Status Validated
Chromosome 13
Chromosomal Location 22989750-22990688 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 22990135 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Glutamine at position 185 (L185Q)
Ref Sequence ENSEMBL: ENSMUSP00000153997 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095961] [ENSMUST00000227038] [ENSMUST00000227265]
AlphaFold Q5NC97
Predicted Effect probably damaging
Transcript: ENSMUST00000095961
AA Change: L185Q

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000093657
Gene: ENSMUSG00000071491
AA Change: L185Q

DomainStartEndE-ValueType
Pfam:TAS2R 2 294 9.8e-9 PFAM
Pfam:V1R 34 297 3e-36 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000227038
AA Change: L185Q

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
Predicted Effect probably damaging
Transcript: ENSMUST00000227265
AA Change: L185Q

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.6%
Validation Efficiency 100% (64/64)
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acod1 C T 14: 103,292,781 (GRCm39) T435M probably benign Het
Adgrf5 T C 17: 43,763,331 (GRCm39) F1078L probably benign Het
Adh6a A T 3: 138,030,708 (GRCm39) N110I probably damaging Het
Aldh16a1 T C 7: 44,798,212 (GRCm39) probably benign Het
Aopep G A 13: 63,446,565 (GRCm39) E123K probably damaging Het
Arhgef17 A G 7: 100,531,692 (GRCm39) F1302S probably damaging Het
Bcl2a1a C T 9: 88,839,506 (GRCm39) R135W probably damaging Het
Bpifa6 T C 2: 153,824,908 (GRCm39) S28P possibly damaging Het
C9 A G 15: 6,520,944 (GRCm39) D51G probably damaging Het
Cfb T A 17: 35,078,044 (GRCm39) H962L probably benign Het
Chn2 G A 6: 54,267,388 (GRCm39) M292I probably damaging Het
Clec16a T A 16: 10,462,747 (GRCm39) probably null Het
Cyp1a1 T C 9: 57,609,039 (GRCm39) S307P probably benign Het
Dsg3 T C 18: 20,664,616 (GRCm39) V538A probably benign Het
Erbb3 G A 10: 128,408,639 (GRCm39) Q815* probably null Het
Fam90a1a C A 8: 22,453,862 (GRCm39) Q406K possibly damaging Het
Frmd3 T C 4: 74,106,109 (GRCm39) V585A probably benign Het
Gm8214 T C 1: 183,414,094 (GRCm39) noncoding transcript Het
Gpld1 G A 13: 25,168,799 (GRCm39) G771D probably damaging Het
Gpr20 T C 15: 73,567,585 (GRCm39) N268S probably benign Het
Gria2 A T 3: 80,614,204 (GRCm39) I612N probably damaging Het
Ifit1bl1 T C 19: 34,572,010 (GRCm39) E149G probably damaging Het
Ighv1-82 T C 12: 115,916,280 (GRCm39) T77A probably benign Het
Ighv2-9 G T 12: 113,842,839 (GRCm39) T76K probably damaging Het
Igkv6-13 A T 6: 70,435,019 (GRCm39) M1K probably null Het
Igkv8-21 A T 6: 70,292,141 (GRCm39) S34T probably benign Het
Itpr1 A G 6: 108,458,184 (GRCm39) N1985D probably damaging Het
Jkampl A G 6: 73,446,252 (GRCm39) V99A probably benign Het
Lama3 T C 18: 12,637,454 (GRCm39) probably null Het
Lamc2 T C 1: 153,041,915 (GRCm39) Y73C probably damaging Het
Maff A G 15: 79,241,898 (GRCm39) D105G probably damaging Het
Mep1a C T 17: 43,797,132 (GRCm39) V312M possibly damaging Het
Mfap4 C A 11: 61,376,335 (GRCm39) probably benign Het
Mplkipl1 C T 19: 61,164,364 (GRCm39) G24R unknown Het
Mrgbp A T 2: 180,227,107 (GRCm39) silent Het
Mtmr4 T C 11: 87,501,761 (GRCm39) L548S probably damaging Het
Myo7b T C 18: 32,136,540 (GRCm39) probably null Het
Myo9a T C 9: 59,728,932 (GRCm39) I596T probably damaging Het
Or2f1b G T 6: 42,739,352 (GRCm39) R122L probably benign Het
Or52e3 C T 7: 102,869,629 (GRCm39) R235* probably null Het
Pcsk5 T G 19: 17,538,114 (GRCm39) Q904H probably benign Het
Pdzrn3 G T 6: 101,128,970 (GRCm39) H565Q probably damaging Het
Phkg2 C T 7: 127,176,792 (GRCm39) R61W probably damaging Het
Pkd2l1 C A 19: 44,142,573 (GRCm39) A490S probably damaging Het
Pomgnt1 T A 4: 116,012,087 (GRCm39) I337N probably damaging Het
Psmd3 T C 11: 98,573,752 (GRCm39) V66A probably benign Het
Ptger3 T C 3: 157,272,931 (GRCm39) S93P probably damaging Het
Rbm27 T A 18: 42,434,840 (GRCm39) D301E probably damaging Het
Rdh16 A T 10: 127,637,382 (GRCm39) probably null Het
Slc35a5 A T 16: 44,964,655 (GRCm39) F193I probably benign Het
Slc4a4 A G 5: 89,186,420 (GRCm39) K167R probably damaging Het
Sort1 A T 3: 108,262,857 (GRCm39) T772S possibly damaging Het
Sptbn5 T A 2: 119,879,238 (GRCm39) noncoding transcript Het
Stard5 G T 7: 83,282,489 (GRCm39) probably benign Het
Tbc1d22a A G 15: 86,119,886 (GRCm39) T61A probably damaging Het
Tox2 T C 2: 163,162,567 (GRCm39) L479P probably damaging Het
Usp53 A T 3: 122,752,769 (GRCm39) M80K probably damaging Het
Vmn2r59 A G 7: 41,661,862 (GRCm39) I651T probably benign Het
Vsig1 G T X: 139,827,135 (GRCm39) A95S probably benign Het
Zfhx4 T C 3: 5,478,127 (GRCm39) S3556P possibly damaging Het
Other mutations in Vmn1r209
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01773:Vmn1r209 APN 13 22,990,450 (GRCm39) missense probably damaging 1.00
IGL01788:Vmn1r209 APN 13 22,989,832 (GRCm39) missense probably damaging 0.97
IGL02738:Vmn1r209 APN 13 22,990,290 (GRCm39) nonsense probably null
IGL03177:Vmn1r209 APN 13 22,990,024 (GRCm39) missense possibly damaging 0.46
IGL03199:Vmn1r209 APN 13 22,990,220 (GRCm39) missense possibly damaging 0.89
R0437:Vmn1r209 UTSW 13 22,990,526 (GRCm39) missense probably benign 0.01
R0497:Vmn1r209 UTSW 13 22,990,118 (GRCm39) missense probably damaging 1.00
R0506:Vmn1r209 UTSW 13 22,990,114 (GRCm39) missense probably damaging 0.98
R1496:Vmn1r209 UTSW 13 22,989,934 (GRCm39) missense probably damaging 1.00
R1644:Vmn1r209 UTSW 13 22,990,652 (GRCm39) missense possibly damaging 0.52
R1829:Vmn1r209 UTSW 13 22,990,409 (GRCm39) missense possibly damaging 0.95
R2360:Vmn1r209 UTSW 13 22,989,836 (GRCm39) missense probably damaging 1.00
R3434:Vmn1r209 UTSW 13 22,990,267 (GRCm39) missense probably benign 0.04
R3435:Vmn1r209 UTSW 13 22,990,267 (GRCm39) missense probably benign 0.04
R4082:Vmn1r209 UTSW 13 22,989,785 (GRCm39) missense probably null 0.15
R4451:Vmn1r209 UTSW 13 22,990,668 (GRCm39) missense probably benign 0.02
R4618:Vmn1r209 UTSW 13 22,990,619 (GRCm39) missense possibly damaging 0.87
R4801:Vmn1r209 UTSW 13 22,989,826 (GRCm39) missense probably damaging 1.00
R4802:Vmn1r209 UTSW 13 22,989,826 (GRCm39) missense probably damaging 1.00
R6035:Vmn1r209 UTSW 13 22,990,202 (GRCm39) missense probably benign 0.02
R6035:Vmn1r209 UTSW 13 22,990,202 (GRCm39) missense probably benign 0.02
R6908:Vmn1r209 UTSW 13 22,990,400 (GRCm39) missense possibly damaging 0.60
R7162:Vmn1r209 UTSW 13 22,990,128 (GRCm39) missense probably damaging 1.00
R7772:Vmn1r209 UTSW 13 22,990,664 (GRCm39) missense possibly damaging 0.77
R8328:Vmn1r209 UTSW 13 22,990,643 (GRCm39) missense probably benign 0.00
R8335:Vmn1r209 UTSW 13 22,989,977 (GRCm39) missense probably damaging 1.00
R8903:Vmn1r209 UTSW 13 22,990,684 (GRCm39) missense probably benign 0.00
R8919:Vmn1r209 UTSW 13 22,990,223 (GRCm39) missense probably benign
R8932:Vmn1r209 UTSW 13 22,990,343 (GRCm39) missense probably damaging 1.00
R9307:Vmn1r209 UTSW 13 22,990,072 (GRCm39) missense probably damaging 0.98
R9343:Vmn1r209 UTSW 13 22,990,546 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AAAGGCACAATCAGTCCAGTAG -3'
(R):5'- ACTAAGGCCAAGGTCTGCATG -3'

Sequencing Primer
(F):5'- CAATCAGTCCAGTAGAAGAAAACG -3'
(R):5'- GGCACATCCTTTTATTCTTCCTATAC -3'
Posted On 2015-10-08