Incidental Mutation 'R4666:Cpsf2'
ID 351959
Institutional Source Beutler Lab
Gene Symbol Cpsf2
Ensembl Gene ENSMUSG00000041781
Gene Name cleavage and polyadenylation specific factor 2
Synonyms 100kDa, Cpsf, 2610024B04Rik
MMRRC Submission 041924-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.964) question?
Stock # R4666 (G1)
Quality Score 225
Status Not validated
Chromosome 12
Chromosomal Location 101942247-101972683 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 101949466 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 61 (S61P)
Ref Sequence ENSEMBL: ENSMUSP00000047797 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047357]
AlphaFold O35218
Predicted Effect probably damaging
Transcript: ENSMUST00000047357
AA Change: S61P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000047797
Gene: ENSMUSG00000041781
AA Change: S61P

DomainStartEndE-ValueType
Lactamase_B 17 223 5.22e-1 SMART
Beta-Casp 243 368 1.8e-21 SMART
coiled coil region 380 418 N/A INTRINSIC
Pfam:RMMBL 527 569 1.2e-14 PFAM
Pfam:CPSF100_C 608 779 5.7e-46 PFAM
Meta Mutation Damage Score 0.9238 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 100 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2410137M14Rik G A 17: 37,289,794 (GRCm39) S12L probably benign Het
Abce1 A G 8: 80,414,115 (GRCm39) V532A probably damaging Het
Adamts12 T A 15: 11,311,578 (GRCm39) N1278K probably benign Het
Adipor1 T A 1: 134,352,643 (GRCm39) I138N probably damaging Het
Aox1 C T 1: 58,343,756 (GRCm39) Q480* probably null Het
Arhgef38 C T 3: 132,846,533 (GRCm39) probably null Het
Atmin A G 8: 117,684,698 (GRCm39) D786G probably damaging Het
Bltp3a G T 17: 28,112,477 (GRCm39) W1222L possibly damaging Het
Capn1 A T 19: 6,061,045 (GRCm39) N253K probably benign Het
Cdh8 T C 8: 99,751,534 (GRCm39) T728A possibly damaging Het
Celsr1 A G 15: 85,914,695 (GRCm39) S1093P probably damaging Het
Cep135 C A 5: 76,764,701 (GRCm39) P560T probably benign Het
Chfr C T 5: 110,292,733 (GRCm39) Q167* probably null Het
Chrna4 A G 2: 180,679,286 (GRCm39) S54P probably damaging Het
Cntln A G 4: 84,889,453 (GRCm39) N312S probably benign Het
Cntn6 A G 6: 104,705,245 (GRCm39) E154G probably benign Het
Col6a6 T A 9: 105,644,541 (GRCm39) Y1249F possibly damaging Het
Cpvl C T 6: 53,908,918 (GRCm39) E282K probably benign Het
Cryba2 C T 1: 74,929,207 (GRCm39) D179N probably benign Het
Daglb A T 5: 143,489,104 (GRCm39) R654W probably damaging Het
Dennd3 A G 15: 73,442,709 (GRCm39) D1244G probably damaging Het
Dhx57 T C 17: 80,582,390 (GRCm39) E405G probably damaging Het
Dnah10 T C 5: 124,905,536 (GRCm39) M4060T possibly damaging Het
Dph1 A G 11: 75,072,156 (GRCm39) S238P probably damaging Het
Duox1 C T 2: 122,149,956 (GRCm39) P116S probably benign Het
Ebf1 A G 11: 44,882,384 (GRCm39) N447D probably damaging Het
Epg5 A G 18: 78,056,079 (GRCm39) N1751S probably benign Het
Exoc6 A G 19: 37,558,953 (GRCm39) D75G probably damaging Het
Extl2 T A 3: 115,817,856 (GRCm39) I70N probably damaging Het
Fanca T C 8: 123,995,711 (GRCm39) T1364A probably damaging Het
Fbln7 T A 2: 128,736,830 (GRCm39) probably null Het
Foxa3 G T 7: 18,748,297 (GRCm39) C275* probably null Het
Foxred1 C T 9: 35,122,151 (GRCm39) probably benign Het
Galr2 A G 11: 116,174,455 (GRCm39) T362A probably benign Het
Garem2 C A 5: 30,319,665 (GRCm39) R376S probably damaging Het
Garre1 T C 7: 33,984,198 (GRCm39) M142V probably damaging Het
Gatc T A 5: 115,473,606 (GRCm39) N111I probably benign Het
Gjb4 C A 4: 127,245,571 (GRCm39) K123N probably damaging Het
Gm9894 T C 13: 67,913,213 (GRCm39) noncoding transcript Het
Gtdc1 T C 2: 44,481,937 (GRCm39) N301S probably benign Het
Gtf2ird1 T A 5: 134,412,756 (GRCm39) E55V probably damaging Het
Gtsf1 T C 15: 103,329,632 (GRCm39) I96V probably benign Het
Homer1 T A 13: 93,538,667 (GRCm39) I170N probably damaging Het
Homer3 G A 8: 70,742,793 (GRCm39) probably null Het
Hoxb9 A G 11: 96,165,657 (GRCm39) K242R possibly damaging Het
Ifna14 T C 4: 88,489,573 (GRCm39) R155G probably benign Het
Lrrc7 GAAGTTGTTTGGAGATTCTTATCTTA GA 3: 158,024,045 (GRCm39) probably benign Het
Lsm11 A G 11: 45,824,640 (GRCm39) S296P probably damaging Het
Macrod2 T C 2: 142,059,519 (GRCm39) L265P probably damaging Het
Mcu G A 10: 59,292,521 (GRCm39) L53F probably damaging Het
Mpv17l2 A G 8: 71,213,061 (GRCm39) V104A possibly damaging Het
Myh10 G A 11: 68,692,556 (GRCm39) probably null Het
Nemf T C 12: 69,359,054 (GRCm39) E1031G probably damaging Het
Nhsl1 G A 10: 18,407,153 (GRCm39) S1395N probably damaging Het
Niban3 G T 8: 72,056,469 (GRCm39) E390* probably null Het
Nlrp2 T A 7: 5,322,188 (GRCm39) I82F probably benign Het
Nlrp4e T A 7: 23,036,205 (GRCm39) L686* probably null Het
Nudt12os T A 17: 59,331,546 (GRCm39) noncoding transcript Het
Or10ag57 T A 2: 87,218,220 (GRCm39) I57K probably damaging Het
Or10j5 G A 1: 172,785,157 (GRCm39) S265N probably benign Het
Or2h1b A T 17: 37,462,270 (GRCm39) S44T possibly damaging Het
Or5ac23 A G 16: 59,149,573 (GRCm39) Y100H possibly damaging Het
Or5k16 T C 16: 58,736,947 (GRCm39) D19G probably benign Het
Or8g27 T A 9: 39,129,142 (GRCm39) M163K probably damaging Het
Pde7a T C 3: 19,314,420 (GRCm39) T59A probably damaging Het
Pde7b A C 10: 20,314,496 (GRCm39) D203E probably damaging Het
Phkg2 T A 7: 127,177,156 (GRCm39) I94N possibly damaging Het
Pik3r2 G A 8: 71,221,503 (GRCm39) T667I possibly damaging Het
Pitx3 T A 19: 46,125,540 (GRCm39) H68L possibly damaging Het
Prcd A G 11: 116,558,990 (GRCm39) probably benign Het
Prune2 C T 19: 17,097,552 (GRCm39) R1019* probably null Het
Psap A G 10: 60,136,324 (GRCm39) D486G probably benign Het
Purb A T 11: 6,425,615 (GRCm39) V91E probably damaging Het
Recql C A 6: 142,322,567 (GRCm39) V112F probably damaging Het
Rptor A T 11: 119,634,708 (GRCm39) I175F probably damaging Het
Sbf1 C T 15: 89,179,449 (GRCm39) V1385M probably damaging Het
Serpinb13 C T 1: 106,910,574 (GRCm39) S66L probably damaging Het
Slc35f6 T C 5: 30,812,957 (GRCm39) L37P probably damaging Het
Slc6a3 T A 13: 73,686,700 (GRCm39) N22K possibly damaging Het
Sorl1 A T 9: 41,915,347 (GRCm39) M1294K probably damaging Het
Sp6 C A 11: 96,912,701 (GRCm39) A138E probably benign Het
Spag8 G T 4: 43,653,408 (GRCm39) probably benign Het
Spmip4 G T 6: 50,572,808 (GRCm39) T35K possibly damaging Het
Spon1 T A 7: 113,628,204 (GRCm39) M320K probably benign Het
Tceanc2 A T 4: 107,022,757 (GRCm39) S77T probably damaging Het
Thsd7a T A 6: 12,337,313 (GRCm39) T1235S possibly damaging Het
Thsd7a T A 6: 12,504,012 (GRCm39) I381F possibly damaging Het
Tmc4 T C 7: 3,674,270 (GRCm39) probably null Het
Tmprss11d T C 5: 86,457,260 (GRCm39) D133G probably damaging Het
Trav13n-3 T A 14: 53,574,953 (GRCm39) V65D probably damaging Het
Trpm1 G T 7: 63,852,782 (GRCm39) L65F probably damaging Het
Tyk2 C T 9: 21,025,503 (GRCm39) A741T probably damaging Het
Ube2v1 T A 2: 167,452,297 (GRCm39) Y102F probably damaging Het
Uckl1 A T 2: 181,216,661 (GRCm39) S95T possibly damaging Het
Vcan C A 13: 89,828,053 (GRCm39) W2171L probably damaging Het
Vinac1 T C 2: 128,880,150 (GRCm39) H592R probably benign Het
Vmn1r64 T C 7: 5,887,357 (GRCm39) N62S probably damaging Het
Vmn2r67 T C 7: 84,799,831 (GRCm39) D469G probably benign Het
Vps13b A G 15: 35,640,690 (GRCm39) S1352G probably benign Het
Zbtb38 C T 9: 96,570,436 (GRCm39) R216H probably damaging Het
Other mutations in Cpsf2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00737:Cpsf2 APN 12 101,949,725 (GRCm39) missense probably damaging 1.00
IGL01114:Cpsf2 APN 12 101,956,098 (GRCm39) missense possibly damaging 0.93
IGL01121:Cpsf2 APN 12 101,954,965 (GRCm39) missense probably damaging 1.00
IGL01377:Cpsf2 APN 12 101,953,640 (GRCm39) splice site probably null
IGL01465:Cpsf2 APN 12 101,963,592 (GRCm39) missense probably damaging 1.00
IGL02861:Cpsf2 APN 12 101,965,825 (GRCm39) missense probably benign 0.00
R0469:Cpsf2 UTSW 12 101,955,045 (GRCm39) missense probably damaging 1.00
R0504:Cpsf2 UTSW 12 101,956,262 (GRCm39) missense probably damaging 1.00
R0510:Cpsf2 UTSW 12 101,955,045 (GRCm39) missense probably damaging 1.00
R0626:Cpsf2 UTSW 12 101,951,490 (GRCm39) missense probably benign 0.09
R0697:Cpsf2 UTSW 12 101,949,443 (GRCm39) missense probably benign 0.34
R0837:Cpsf2 UTSW 12 101,963,501 (GRCm39) splice site probably benign
R1475:Cpsf2 UTSW 12 101,951,495 (GRCm39) missense probably damaging 1.00
R1709:Cpsf2 UTSW 12 101,965,801 (GRCm39) missense probably damaging 1.00
R1974:Cpsf2 UTSW 12 101,956,306 (GRCm39) missense probably benign 0.33
R1996:Cpsf2 UTSW 12 101,964,867 (GRCm39) missense probably benign 0.18
R2063:Cpsf2 UTSW 12 101,949,722 (GRCm39) missense probably damaging 1.00
R2164:Cpsf2 UTSW 12 101,951,594 (GRCm39) missense probably damaging 1.00
R2228:Cpsf2 UTSW 12 101,956,088 (GRCm39) missense probably benign 0.00
R3082:Cpsf2 UTSW 12 101,955,069 (GRCm39) missense probably damaging 0.99
R3732:Cpsf2 UTSW 12 101,953,567 (GRCm39) missense probably damaging 0.99
R3732:Cpsf2 UTSW 12 101,953,567 (GRCm39) missense probably damaging 0.99
R3733:Cpsf2 UTSW 12 101,953,567 (GRCm39) missense probably damaging 0.99
R4627:Cpsf2 UTSW 12 101,956,154 (GRCm39) missense probably benign 0.18
R4665:Cpsf2 UTSW 12 101,949,466 (GRCm39) missense probably damaging 1.00
R4765:Cpsf2 UTSW 12 101,963,699 (GRCm39) missense probably damaging 1.00
R4777:Cpsf2 UTSW 12 101,963,091 (GRCm39) missense probably damaging 0.99
R4847:Cpsf2 UTSW 12 101,963,561 (GRCm39) missense probably benign 0.18
R4923:Cpsf2 UTSW 12 101,948,243 (GRCm39) missense probably benign
R4975:Cpsf2 UTSW 12 101,949,752 (GRCm39) missense probably damaging 1.00
R5239:Cpsf2 UTSW 12 101,953,532 (GRCm39) nonsense probably null
R5440:Cpsf2 UTSW 12 101,963,138 (GRCm39) missense probably benign
R5601:Cpsf2 UTSW 12 101,951,614 (GRCm39) splice site probably null
R5603:Cpsf2 UTSW 12 101,964,890 (GRCm39) missense probably benign 0.02
R5841:Cpsf2 UTSW 12 101,951,497 (GRCm39) missense probably damaging 0.99
R6153:Cpsf2 UTSW 12 101,965,619 (GRCm39) splice site probably null
R6663:Cpsf2 UTSW 12 101,965,852 (GRCm39) missense probably damaging 1.00
R7451:Cpsf2 UTSW 12 101,967,051 (GRCm39) missense possibly damaging 0.52
R8357:Cpsf2 UTSW 12 101,968,929 (GRCm39) missense probably damaging 0.99
R8457:Cpsf2 UTSW 12 101,968,929 (GRCm39) missense probably damaging 0.99
R9123:Cpsf2 UTSW 12 101,963,555 (GRCm39) missense probably damaging 0.96
R9433:Cpsf2 UTSW 12 101,948,252 (GRCm39) missense probably damaging 1.00
V8831:Cpsf2 UTSW 12 101,969,400 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGGGAGTCATTGCATTAGCC -3'
(R):5'- CACATCATCCAATGTAAAGAGGG -3'

Sequencing Primer
(F):5'- AGTCATTGCATTAGCCCTTGG -3'
(R):5'- CTTCTGTATTGTGTCGAGACTAAAAG -3'
Posted On 2015-10-08