Mutagenetix > Incidental Mutation

Incidental Mutation 'R4667:Msh6'

352091

Institutional Source

Beutler Lab

Gene Symbol

Msh6

Ensembl Gene

ENSMUSG00000005370

Gene Name

mutS homolog 6

Synonyms

Gtmbp, GTBP, Msh6

MMRRC Submission

042012-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4667 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

88282490-88298320 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 88292234 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 330 (S330P)

Ref Sequence

ENSEMBL: ENSMUSP00000005503 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005503]

AlphaFold

P54276

Predicted Effect

possibly damaging
Transcript: ENSMUST00000005503
AA Change: S330P

PolyPhen 2 Score 0.893 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000005503
Gene: ENSMUSG00000005370
AA Change: S330P

Domain	Start	End	E-Value	Type
low complexity region	23	46	N/A	INTRINSIC
low complexity region	76	87	N/A	INTRINSIC
PWWP	90	152	9.01e-30	SMART
low complexity region	198	212	N/A	INTRINSIC
low complexity region	216	230	N/A	INTRINSIC
low complexity region	239	264	N/A	INTRINSIC
low complexity region	273	291	N/A	INTRINSIC
low complexity region	373	389	N/A	INTRINSIC
Pfam:MutS_I	406	525	4.7e-35	PFAM
Pfam:MutS_II	536	700	1.4e-10	PFAM
MUTSd	750	1100	4.56e-86	SMART
MUTSac	1125	1319	1.68e-116	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the DNA mismatch repair MutS family. In E. coli, the MutS protein helps in the recognition of mismatched nucleotides prior to their repair. A highly conserved region of approximately 150 aa, called the Walker-A adenine nucleotide binding motif, exists in MutS homologs. The encoded protein heterodimerizes with MSH2 to form a mismatch recognition complex that functions as a bidirectional molecular switch that exchanges ADP and ATP as DNA mismatches are bound and dissociated. Mutations in this gene may be associated with hereditary nonpolyposis colon cancer, colorectal cancer, and endometrial cancer. Transcripts variants encoding different isoforms have been described. [provided by RefSeq, Jul 2013]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit premature death and are predisposed to tumor formation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 109 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acad8	A	G	9: 26,901,923 (GRCm39)	L147P	probably damaging	Het
Adgra3	T	A	5: 50,136,298 (GRCm39)	Y729F	possibly damaging	Het
Ago2	A	G	15: 73,018,265 (GRCm39)	Y58H	probably damaging	Het
Akap13	A	G	7: 75,378,842 (GRCm39)	T2128A	probably damaging	Het
Ankhd1	C	A	18: 36,781,074 (GRCm39)	P2042Q	possibly damaging	Het
Arhgef15	T	C	11: 68,845,387 (GRCm39)	K155R	probably benign	Het
Atp10b	T	C	11: 43,138,345 (GRCm39)	F1209L	probably damaging	Het
B130006D01Rik	A	T	11: 95,617,335 (GRCm39)		probably benign	Het
Bmpr2	T	C	1: 59,906,875 (GRCm39)	L656S	probably damaging	Het
Bnip5	G	T	17: 29,127,287 (GRCm39)	Q241K	possibly damaging	Het
Btbd17	A	G	11: 114,684,683 (GRCm39)	F119L	possibly damaging	Het
Ccdc191	G	T	16: 43,751,646 (GRCm39)	K267N	probably damaging	Het
Cd200l1	A	G	16: 45,264,526 (GRCm39)	S11P	probably benign	Het
Ceacam20	T	C	7: 19,719,952 (GRCm39)	Y495H	probably damaging	Het
Celf2	T	C	2: 6,726,339 (GRCm39)	I47V	probably benign	Het
Cemip2	G	A	19: 21,774,715 (GRCm39)	R119H	probably benign	Het
Cemip2	C	T	19: 21,822,145 (GRCm39)	A1180V	probably benign	Het
Chd9	T	C	8: 91,760,428 (GRCm39)	S2058P	possibly damaging	Het
Clcn6	T	C	4: 148,108,624 (GRCm39)	E135G	possibly damaging	Het
Cntn1	T	A	15: 92,192,960 (GRCm39)	N687K	probably damaging	Het
Col1a2	A	T	6: 4,512,412 (GRCm39)	M99L	unknown	Het
Cpeb2	T	C	5: 43,391,235 (GRCm39)		probably benign	Het
Csn1s2b	A	G	5: 87,970,170 (GRCm39)	T134A	possibly damaging	Het
Cst13	A	T	2: 148,665,001 (GRCm39)		probably benign	Het
Cyp2c66	T	A	19: 39,165,100 (GRCm39)	D360E	probably damaging	Het
Dhx8	A	G	11: 101,628,987 (GRCm39)	S179G	unknown	Het
Dip2b	A	G	15: 100,049,241 (GRCm39)	I212V	probably benign	Het
Dnah9	G	A	11: 66,046,357 (GRCm39)	H64Y	probably benign	Het
Dnal1	T	C	12: 84,183,474 (GRCm39)		probably benign	Het
Dse	T	G	10: 34,029,008 (GRCm39)	Y694S	probably damaging	Het
Dync2h1	T	C	9: 7,051,411 (GRCm39)	I3175V	probably benign	Het
Elf5	A	G	2: 103,279,405 (GRCm39)	N209D	probably damaging	Het
Elovl1	A	G	4: 118,287,984 (GRCm39)	Y40C	probably damaging	Het
Erp27	T	C	6: 136,885,150 (GRCm39)	E216G	possibly damaging	Het
F5	G	A	1: 164,001,755 (GRCm39)	V153I	probably benign	Het
Fam186a	G	A	15: 99,842,413 (GRCm39)	T1277I	possibly damaging	Het
Fam90a1a	A	T	8: 22,453,362 (GRCm39)	H239L	possibly damaging	Het
Fchsd2	G	T	7: 100,899,656 (GRCm39)	R334L	probably damaging	Het
Fermt3	T	C	19: 6,980,288 (GRCm39)	Y369C	probably damaging	Het
Fhod3	C	T	18: 25,199,395 (GRCm39)	P689S	probably benign	Het
Fnbp1l	G	T	3: 122,350,216 (GRCm39)	Q332K	probably benign	Het
Frem3	T	C	8: 81,390,049 (GRCm39)	S1767P	probably damaging	Het
Ggt5	T	C	10: 75,438,865 (GRCm39)	L121P	probably damaging	Het
Gphn	T	C	12: 78,501,591 (GRCm39)	S119P	probably damaging	Het
Herc2	A	G	7: 55,781,001 (GRCm39)	D1222G	probably damaging	Het
Hmx3	T	C	7: 131,146,111 (GRCm39)	I273T	possibly damaging	Het
Hnrnpu	A	G	1: 178,159,746 (GRCm39)		probably benign	Het
Hspg2	C	T	4: 137,266,956 (GRCm39)	T1987I	possibly damaging	Het
Ighv1-22	T	A	12: 114,710,071 (GRCm39)	Q58L	probably damaging	Het
Ighv14-3	T	A	12: 114,023,875 (GRCm39)	I7F	probably benign	Het
Kcns3	C	A	12: 11,141,784 (GRCm39)	R305L	probably damaging	Het
Kcnu1	C	T	8: 26,400,949 (GRCm39)	A699V	possibly damaging	Het
Kif22	A	C	7: 126,632,500 (GRCm39)	L270W	probably damaging	Het
Lrp2	G	T	2: 69,319,642 (GRCm39)	H1960Q	probably benign	Het
Marchf7	C	T	2: 60,071,394 (GRCm39)	Q94*	probably null	Het
Mcoln3	A	T	3: 145,836,959 (GRCm39)	I264F	probably benign	Het
Mdn1	A	C	4: 32,679,572 (GRCm39)	T706P	probably damaging	Het
Mfsd2b	A	G	12: 4,917,636 (GRCm39)	C137R	probably benign	Het
Mmp25	A	G	17: 23,863,581 (GRCm39)	V83A	probably benign	Het
Mocos	T	C	18: 24,799,491 (GRCm39)	Y242H	probably benign	Het
Mtus2	T	C	5: 148,235,070 (GRCm39)	S1156P	possibly damaging	Het
Muc5b	G	A	7: 141,396,116 (GRCm39)	R124H	unknown	Het
Mybbp1a	G	A	11: 72,338,797 (GRCm39)	E775K	possibly damaging	Het
Myo10	A	G	15: 25,793,239 (GRCm39)	E1272G	possibly damaging	Het
Nars1	A	G	18: 64,638,302 (GRCm39)	S254P	possibly damaging	Het
Ncapd2	A	G	6: 125,161,481 (GRCm39)	I211T	possibly damaging	Het
Ncoa7	A	T	10: 30,566,786 (GRCm39)	W582R	probably damaging	Het
Npr3	T	A	15: 11,905,553 (GRCm39)	D58V	possibly damaging	Het
Nr3c1	G	T	18: 39,561,780 (GRCm39)	T430K	probably benign	Het
Odf2l	A	G	3: 144,833,801 (GRCm39)	T111A	probably benign	Het
Ogdh	G	T	11: 6,290,600 (GRCm39)	C406F	probably benign	Het
Olfml2a	T	G	2: 38,839,022 (GRCm39)	S190A	probably damaging	Het
Optn	T	C	2: 5,037,950 (GRCm39)	K415E	probably benign	Het
Or10n1	T	C	9: 39,525,034 (GRCm39)	M57T	probably damaging	Het
Or52a20	A	G	7: 103,365,845 (GRCm39)	T15A	probably benign	Het
Or8b12i	T	C	9: 20,082,394 (GRCm39)	I158V	probably benign	Het
Or8g52	G	T	9: 39,631,005 (GRCm39)	V161F	probably benign	Het
Pakap	A	T	4: 57,855,655 (GRCm39)	D328V	possibly damaging	Het
Perm1	C	A	4: 156,304,663 (GRCm39)	S803*	probably null	Het
Pex14	T	C	4: 149,068,542 (GRCm39)	T84A	probably benign	Het
Pih1d2	T	A	9: 50,532,252 (GRCm39)	Y103*	probably null	Het
Pikfyve	T	A	1: 65,289,432 (GRCm39)	C1235S	probably damaging	Het
Polr1a	A	G	6: 71,894,805 (GRCm39)	N171S	probably benign	Het
Prrx1	A	G	1: 163,081,616 (GRCm39)	S201P	probably benign	Het
Psme2b	A	T	11: 48,836,493 (GRCm39)	N151K	probably benign	Het
Serpinb5	A	T	1: 106,800,025 (GRCm39)	T72S	probably benign	Het
Sgsm1	A	G	5: 113,407,913 (GRCm39)		probably null	Het
Sipa1l2	T	C	8: 126,180,209 (GRCm39)	R1063G	possibly damaging	Het
Slc19a3	T	C	1: 83,000,520 (GRCm39)	T166A	probably benign	Het
Slc5a4b	T	C	10: 75,910,879 (GRCm39)	Y319C	possibly damaging	Het
Stard3nl	T	A	13: 19,560,689 (GRCm39)	N29Y	probably damaging	Het
Sult6b2	G	T	6: 142,747,421 (GRCm39)	C109*	probably null	Het
Tcf25	A	G	8: 124,123,764 (GRCm39)	E467G	possibly damaging	Het
Tmem177	A	T	1: 119,837,950 (GRCm39)	V243D	probably benign	Het
Top2b	T	G	14: 16,409,189 (GRCm38)	I777M	probably damaging	Het
Tspan11	T	A	6: 127,920,678 (GRCm39)	C208*	probably null	Het
Ttc1	A	G	11: 43,636,144 (GRCm39)	V33A	probably benign	Het
Tut4	G	A	4: 108,352,356 (GRCm39)	E357K	probably damaging	Het
Uck1	T	A	2: 32,146,046 (GRCm39)	H283L	probably damaging	Het
Utrn	A	C	10: 12,573,797 (GRCm39)	V1091G	probably benign	Het
Vmn1r11	A	T	6: 57,114,483 (GRCm39)	H49L	probably damaging	Het
Vmn1r160	G	T	7: 22,571,478 (GRCm39)	S277I	probably benign	Het
Vmn1r18	A	T	6: 57,367,069 (GRCm39)	S162T	probably benign	Het
Vps37b	A	G	5: 124,148,795 (GRCm39)	L80P	probably damaging	Het
Wfdc3	T	C	2: 164,585,006 (GRCm39)	M1V	probably null	Het
Wrn	A	T	8: 33,814,366 (GRCm39)	N116K	probably benign	Het
Wscd2	G	T	5: 113,715,333 (GRCm39)	G391V	probably damaging	Het
Zfp286	A	G	11: 62,671,428 (GRCm39)	V215A	probably benign	Het
Zfp568	A	G	7: 29,722,702 (GRCm39)	H549R	probably damaging	Het

Other mutations in Msh6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01691:Msh6	APN	17	88,292,907 (GRCm39)	missense	probably benign
IGL01834:Msh6	APN	17	88,293,140 (GRCm39)	missense	probably damaging	1.00
IGL01904:Msh6	APN	17	88,292,160 (GRCm39)	missense	probably benign
IGL01957:Msh6	APN	17	88,292,519 (GRCm39)	missense	possibly damaging	0.73
IGL02117:Msh6	APN	17	88,298,234 (GRCm39)	unclassified	probably benign
IGL02234:Msh6	APN	17	88,294,229 (GRCm39)	missense	probably damaging	1.00
IGL02512:Msh6	APN	17	88,292,160 (GRCm39)	missense	probably benign
IGL02651:Msh6	APN	17	88,296,943 (GRCm39)	missense	probably damaging	1.00
IGL03381:Msh6	APN	17	88,292,537 (GRCm39)	missense	probably damaging	1.00
medea	UTSW	17	88,287,651 (GRCm39)	nonsense	probably null
medusa	UTSW	17	88,295,891 (GRCm39)	unclassified	probably benign
PIT4449001:Msh6	UTSW	17	88,293,616 (GRCm39)	missense	probably damaging	0.96
R0196:Msh6	UTSW	17	88,287,788 (GRCm39)	missense	possibly damaging	0.95
R0324:Msh6	UTSW	17	88,294,048 (GRCm39)	nonsense	probably null
R0492:Msh6	UTSW	17	88,282,679 (GRCm39)	missense	probably benign
R0711:Msh6	UTSW	17	88,294,112 (GRCm39)	missense	probably damaging	1.00
R1065:Msh6	UTSW	17	88,295,891 (GRCm39)	unclassified	probably benign
R1454:Msh6	UTSW	17	88,292,186 (GRCm39)	missense	probably benign	0.00
R1740:Msh6	UTSW	17	88,293,150 (GRCm39)	missense	possibly damaging	0.72
R1770:Msh6	UTSW	17	88,287,651 (GRCm39)	nonsense	probably null
R1771:Msh6	UTSW	17	88,291,950 (GRCm39)	missense	probably benign	0.17
R1919:Msh6	UTSW	17	88,292,553 (GRCm39)	missense	probably benign	0.01
R1926:Msh6	UTSW	17	88,293,653 (GRCm39)	missense	probably benign
R2026:Msh6	UTSW	17	88,297,771 (GRCm39)	missense	probably damaging	1.00
R2095:Msh6	UTSW	17	88,295,661 (GRCm39)	missense	possibly damaging	0.93
R2097:Msh6	UTSW	17	88,292,844 (GRCm39)	missense	probably benign	0.00
R2149:Msh6	UTSW	17	88,293,516 (GRCm39)	missense	probably damaging	1.00
R2156:Msh6	UTSW	17	88,293,568 (GRCm39)	nonsense	probably null
R2167:Msh6	UTSW	17	88,296,911 (GRCm39)	missense	probably damaging	1.00
R2382:Msh6	UTSW	17	88,292,159 (GRCm39)	missense	probably benign
R3005:Msh6	UTSW	17	88,295,713 (GRCm39)	missense	probably benign	0.34
R3160:Msh6	UTSW	17	88,292,909 (GRCm39)	missense	probably damaging	1.00
R3162:Msh6	UTSW	17	88,292,909 (GRCm39)	missense	probably damaging	1.00
R3162:Msh6	UTSW	17	88,292,909 (GRCm39)	missense	probably damaging	1.00
R3774:Msh6	UTSW	17	88,293,609 (GRCm39)	missense	probably damaging	1.00
R3775:Msh6	UTSW	17	88,293,609 (GRCm39)	missense	probably damaging	1.00
R4350:Msh6	UTSW	17	88,292,012 (GRCm39)	missense	probably damaging	1.00
R4424:Msh6	UTSW	17	88,298,217 (GRCm39)	nonsense	probably null
R4499:Msh6	UTSW	17	88,287,697 (GRCm39)	missense	probably damaging	1.00
R4668:Msh6	UTSW	17	88,292,234 (GRCm39)	missense	possibly damaging	0.89
R4669:Msh6	UTSW	17	88,292,234 (GRCm39)	missense	possibly damaging	0.89
R4849:Msh6	UTSW	17	88,290,947 (GRCm39)	missense	possibly damaging	0.94
R5137:Msh6	UTSW	17	88,287,716 (GRCm39)	missense	possibly damaging	0.83
R5472:Msh6	UTSW	17	88,291,989 (GRCm39)	missense	possibly damaging	0.81
R5594:Msh6	UTSW	17	88,293,497 (GRCm39)	missense	probably benign	0.00
R5607:Msh6	UTSW	17	88,294,329 (GRCm39)	missense	probably damaging	1.00
R5608:Msh6	UTSW	17	88,294,329 (GRCm39)	missense	probably damaging	1.00
R5660:Msh6	UTSW	17	88,292,147 (GRCm39)	missense	possibly damaging	0.94
R6243:Msh6	UTSW	17	88,290,999 (GRCm39)	missense	possibly damaging	0.69
R6279:Msh6	UTSW	17	88,287,677 (GRCm39)	missense	probably damaging	1.00
R6357:Msh6	UTSW	17	88,291,888 (GRCm39)	nonsense	probably null
R6399:Msh6	UTSW	17	88,294,319 (GRCm39)	missense	probably damaging	1.00
R6453:Msh6	UTSW	17	88,293,167 (GRCm39)	missense	probably damaging	1.00
R6646:Msh6	UTSW	17	88,293,870 (GRCm39)	missense	possibly damaging	0.80
R7404:Msh6	UTSW	17	88,282,548 (GRCm39)
R7837:Msh6	UTSW	17	88,292,094 (GRCm39)	missense	probably damaging	1.00
R8004:Msh6	UTSW	17	88,294,215 (GRCm39)	missense	probably damaging	1.00
R8296:Msh6	UTSW	17	88,294,340 (GRCm39)	missense	probably damaging	1.00
R8326:Msh6	UTSW	17	88,294,340 (GRCm39)	missense	probably damaging	1.00
R8377:Msh6	UTSW	17	88,292,598 (GRCm39)	missense	probably damaging	1.00
R8715:Msh6	UTSW	17	88,293,195 (GRCm39)	missense	probably benign
R9752:Msh6	UTSW	17	88,293,963 (GRCm39)	missense	probably damaging	1.00
X0026:Msh6	UTSW	17	88,298,042 (GRCm39)	missense	probably benign	0.00
X0026:Msh6	UTSW	17	88,293,609 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGAAGCGACGGGTCATCTC -3'
(R):5'- AAATTCAGGGTGATCGGGGC -3'

Sequencing Primer
(F):5'- GGCTCTGATGTAGAATTCAAGCC -3'
(R):5'- GGGCGTCTCCTGTGCTCATC -3'

Posted On

2015-10-08