Mutagenetix > Incidental Mutation

Incidental Mutation 'R4668:Stk25'

352105

Institutional Source

Beutler Lab

Gene Symbol

Stk25

Ensembl Gene

ENSMUSG00000026277

Gene Name

serine/threonine kinase 25 (yeast)

Synonyms

SOK-1, Ste20-like, 1500019J11Rik, Ysk1

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4668 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

93548473-93581937 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 93553205 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 299 (S299P)

Ref Sequence

ENSEMBL: ENSMUSP00000027498 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027498] [ENSMUST00000120301] [ENSMUST00000133769] [ENSMUST00000186287]

AlphaFold

Q9Z2W1

Predicted Effect

probably damaging
Transcript: ENSMUST00000027498
AA Change: S299P

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000027498
Gene: ENSMUSG00000026277
AA Change: S299P

Domain	Start	End	E-Value	Type
S_TKc	20	270	2.92e-98	SMART
low complexity region	292	314	N/A	INTRINSIC
PDB:3W8H\|B	355	426	8e-43	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000120301

SMART Domains

Protein: ENSMUSP00000112725
Gene: ENSMUSG00000034066

Domain	Start	End	E-Value	Type
B41	40	234	1.48e-66	SMART
FERM_C	238	328	3.29e-35	SMART
FA	332	378	1.13e-15	SMART
low complexity region	409	421	N/A	INTRINSIC
low complexity region	440	459	N/A	INTRINSIC
low complexity region	462	473	N/A	INTRINSIC
low complexity region	478	492	N/A	INTRINSIC
RhoGEF	542	728	1.57e-56	SMART
PH	759	857	1.45e-19	SMART
low complexity region	879	890	N/A	INTRINSIC
PH	931	1029	2.62e-17	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125778

Predicted Effect

probably benign
Transcript: ENSMUST00000133769

SMART Domains

Protein: ENSMUSP00000117765
Gene: ENSMUSG00000026277

Domain	Start	End	E-Value	Type
Pfam:Pkinase	20	233	1.7e-63	PFAM
Pfam:Pkinase_Tyr	20	233	2.1e-47	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151068

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154008

Predicted Effect

probably benign
Transcript: ENSMUST00000186287

SMART Domains

Protein: ENSMUSP00000140396
Gene: ENSMUSG00000026277

Domain	Start	End	E-Value	Type
STYKc	20	107	1.9e-4	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the germinal centre kinase III (GCK III) subfamily of the sterile 20 superfamily of kinases. The encoded enzyme plays a role in serine-threonine liver kinase B1 (LKB1) signaling pathway to regulate neuronal polarization and morphology of the Golgi apparatus. The protein is translocated from the Golgi apparatus to the nucleus in response to chemical anoxia and plays a role in regulation of cell death. A pseudogene associated with this gene is located on chromosome 18. Multiple alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Dec 2012]
PHENOTYPE: Germ line null mutants display normal cortical layers and neuronal migration. Acute loss of expression results in impaired neuronal migration. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921528I07Rik	A	T	9: 114,133,779 (GRCm39)		noncoding transcript	Het
6430548M08Rik	T	C	8: 120,887,153 (GRCm39)		probably null	Het
Abca4	G	A	3: 121,948,948 (GRCm39)	G531E	possibly damaging	Het
Acad8	A	G	9: 26,901,923 (GRCm39)	L147P	probably damaging	Het
Acot10	T	C	15: 20,666,028 (GRCm39)	S238G	probably benign	Het
Adamtsl2	A	T	2: 26,985,487 (GRCm39)	H457L	probably benign	Het
Ankrd35	A	T	3: 96,586,524 (GRCm39)	T67S	probably damaging	Het
Aox1	T	G	1: 58,373,853 (GRCm39)	I838S	possibly damaging	Het
Arnt2	T	C	7: 83,924,594 (GRCm39)	N411S	probably damaging	Het
Bmpr2	T	C	1: 59,906,875 (GRCm39)	L656S	probably damaging	Het
Carns1	A	T	19: 4,215,475 (GRCm39)	Y902*	probably null	Het
Cavin1	T	C	11: 100,849,622 (GRCm39)	E336G	probably damaging	Het
Cbl	A	T	9: 44,065,145 (GRCm39)	C728S	probably benign	Het
Ccdc136	C	A	6: 29,411,280 (GRCm39)	Q218K	probably damaging	Het
Cdk19	C	A	10: 40,342,706 (GRCm39)	T196K	probably damaging	Het
Ceacam20	T	C	7: 19,719,952 (GRCm39)	Y495H	probably damaging	Het
Celf2	T	C	2: 6,726,339 (GRCm39)	I47V	probably benign	Het
Ces3a	A	C	8: 105,780,055 (GRCm39)	K299T	probably damaging	Het
Cfap61	A	T	2: 145,985,056 (GRCm39)	I967F	probably damaging	Het
Cnksr1	C	T	4: 133,960,282 (GRCm39)		probably benign	Het
Cped1	T	C	6: 22,237,652 (GRCm39)	Y923H	probably benign	Het
Crip3	T	C	17: 46,740,290 (GRCm39)	L30P	probably damaging	Het
Csmd1	A	G	8: 16,073,905 (GRCm39)	I2030T	possibly damaging	Het
Ctse	C	A	1: 131,590,487 (GRCm39)	P70T	probably damaging	Het
Cyp2b23	A	G	7: 26,372,159 (GRCm39)	F429L	probably damaging	Het
Cyp2c66	T	A	19: 39,165,100 (GRCm39)	D360E	probably damaging	Het
D8Ertd738e	A	T	8: 84,976,110 (GRCm39)	L46*	probably null	Het
Dcp2	T	A	18: 44,548,429 (GRCm39)		probably null	Het
Ddx10	C	A	9: 53,010,513 (GRCm39)	D834Y	possibly damaging	Het
Ddx19a	A	T	8: 111,705,716 (GRCm39)	V245E	probably damaging	Het
Dpf2	A	C	19: 5,954,515 (GRCm39)	D130E	probably benign	Het
Emc8	A	T	8: 121,394,518 (GRCm39)	M67K	probably damaging	Het
Ephb6	T	C	6: 41,591,536 (GRCm39)	L231P	possibly damaging	Het
Erp27	T	C	6: 136,885,150 (GRCm39)	E216G	possibly damaging	Het
Esco1	A	T	18: 10,594,734 (GRCm39)	I184N	possibly damaging	Het
Fdxacb1	T	A	9: 50,681,560 (GRCm39)	D11E	possibly damaging	Het
Fhod3	C	T	18: 25,199,395 (GRCm39)	P689S	probably benign	Het
Fnip1	T	A	11: 54,394,385 (GRCm39)	S940R	probably damaging	Het
Ganc	G	T	2: 120,261,548 (GRCm39)	V343F	probably benign	Het
Gldn	T	A	9: 54,239,302 (GRCm39)	L228*	probably null	Het
Gm1123	C	T	9: 98,891,426 (GRCm39)	R341H	probably damaging	Het
Gtf2f2	T	C	14: 76,155,078 (GRCm39)	Y161C	probably benign	Het
Gtf3c1	T	C	7: 125,266,510 (GRCm39)	T979A	probably damaging	Het
H4c1	A	G	13: 23,944,959 (GRCm39)	V61A	probably benign	Het
Hmcn2	G	T	2: 31,325,804 (GRCm39)	R4277L	probably benign	Het
Hsd17b6	T	A	10: 127,830,295 (GRCm39)		probably null	Het
Igkv12-46	T	C	6: 69,741,781 (GRCm39)	T25A	probably damaging	Het
Inpp5e	G	A	2: 26,291,006 (GRCm39)	R354C	probably damaging	Het
Jcad	T	A	18: 4,680,221 (GRCm39)		probably null	Het
Kcna10	G	T	3: 107,102,010 (GRCm39)	A214S	possibly damaging	Het
Kit	T	C	5: 75,801,880 (GRCm39)		probably null	Het
Kmt2a	G	A	9: 44,735,869 (GRCm39)		probably benign	Het
Lama1	T	C	17: 68,059,429 (GRCm39)	V604A	probably benign	Het
Mesd	T	C	7: 83,544,964 (GRCm39)	V138A	probably damaging	Het
Mmp13	T	C	9: 7,272,580 (GRCm39)	F9S	possibly damaging	Het
Mocos	T	C	18: 24,799,491 (GRCm39)	Y242H	probably benign	Het
Mrc1	A	C	2: 14,298,297 (GRCm39)	T718P	probably damaging	Het
Msh6	T	C	17: 88,292,234 (GRCm39)	S330P	possibly damaging	Het
Myh10	A	G	11: 68,695,468 (GRCm39)	K1532E	probably damaging	Het
Nat9	T	C	11: 115,075,368 (GRCm39)	N91S	probably damaging	Het
Neto2	A	T	8: 86,367,691 (GRCm39)	I351N	probably damaging	Het
Nfx1	A	G	4: 40,976,367 (GRCm39)	N14D	possibly damaging	Het
Nlrp4b	A	G	7: 10,448,660 (GRCm39)	T288A	possibly damaging	Het
Nutm2	C	A	13: 50,627,033 (GRCm39)	T396K	probably benign	Het
Ogdhl	A	G	14: 32,054,493 (GRCm39)	T196A	probably benign	Het
Omg	T	A	11: 79,393,249 (GRCm39)	N203I	probably damaging	Het
Or52b4i	A	G	7: 102,191,811 (GRCm39)	I223V	possibly damaging	Het
Or52r1b	A	T	7: 102,691,058 (GRCm39)	D119V	probably benign	Het
Or5b101	A	T	19: 13,005,445 (GRCm39)	F83I	probably benign	Het
Pdgfrb	A	G	18: 61,197,185 (GRCm39)	Y207C	probably damaging	Het
Pdzd7	T	A	19: 45,034,126 (GRCm39)		probably benign	Het
Pgs1	C	A	11: 117,894,333 (GRCm39)	H157N	probably damaging	Het
Pik3c2a	A	G	7: 115,957,923 (GRCm39)	V1121A	probably benign	Het
Pikfyve	T	A	1: 65,289,432 (GRCm39)	C1235S	probably damaging	Het
Pms1	G	A	1: 53,228,633 (GRCm39)	Q872*	probably null	Het
Ptgs2	A	G	1: 149,976,835 (GRCm39)	T23A	probably benign	Het
Rgl1	T	G	1: 152,397,122 (GRCm39)	R716S	probably damaging	Het
Rif1	A	G	2: 52,001,964 (GRCm39)	E1806G	probably benign	Het
Ripor1	T	C	8: 106,341,284 (GRCm39)	V39A	probably benign	Het
Ryr2	G	T	13: 11,608,003 (GRCm39)	T868N	probably benign	Het
Sec22b	A	T	3: 97,828,438 (GRCm39)	D167V	probably damaging	Het
Sec24d	T	C	3: 123,149,423 (GRCm39)	V810A	probably damaging	Het
Shh	T	C	5: 28,662,853 (GRCm39)	*438W	probably null	Het
Slc25a12	G	A	2: 71,145,406 (GRCm39)	S178L	probably benign	Het
Sorl1	A	T	9: 41,895,804 (GRCm39)	W1784R	probably damaging	Het
Sp3	A	T	2: 72,801,325 (GRCm39)	S229R	probably damaging	Het
Spata31f3	A	G	4: 42,871,608 (GRCm39)	F256L	probably benign	Het
Spdye4c	G	A	2: 128,434,273 (GRCm39)	V5I	possibly damaging	Het
Spint2	A	T	7: 28,959,804 (GRCm39)	V53D	probably damaging	Het
Stard3nl	T	A	13: 19,560,689 (GRCm39)	N29Y	probably damaging	Het
Sult2a3	A	G	7: 13,856,786 (GRCm39)	S45P	probably damaging	Het
Thsd7a	A	T	6: 12,408,967 (GRCm39)	V685E	probably damaging	Het
Tm9sf4	T	A	2: 153,029,228 (GRCm39)	V92D	probably damaging	Het
Top2b	T	G	14: 16,409,189 (GRCm38)	I777M	probably damaging	Het
Topors	G	A	4: 40,262,669 (GRCm39)	T205I	probably damaging	Het
Tpo	T	A	12: 30,153,289 (GRCm39)	Y355F	probably benign	Het
Uba1y	T	A	Y: 826,032 (GRCm39)	M396K	possibly damaging	Het
Vmn1r50	A	T	6: 90,084,513 (GRCm39)	Q86L	probably benign	Het
Vmn1r77	A	G	7: 11,775,358 (GRCm39)	K45E	probably damaging	Het
Vmn2r114	A	C	17: 23,529,447 (GRCm39)	N218K	possibly damaging	Het
Vmn2r66	T	A	7: 84,643,905 (GRCm39)	N835I	probably damaging	Het
Vps54	T	G	11: 21,249,989 (GRCm39)	N458K	probably benign	Het
Zcchc7	G	T	4: 44,895,964 (GRCm39)	C304F	probably damaging	Het
Zfp335	A	T	2: 164,742,206 (GRCm39)	C593S	probably damaging	Het
Zmynd15	C	G	11: 70,353,414 (GRCm39)	P214R	probably damaging	Het

Other mutations in Stk25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01291:Stk25	APN	1	93,551,145 (GRCm39)	splice site	probably null
IGL02952:Stk25	APN	1	93,553,798 (GRCm39)	missense	probably damaging	1.00
IGL03144:Stk25	APN	1	93,556,858 (GRCm39)	missense	probably damaging	1.00
ANU05:Stk25	UTSW	1	93,551,145 (GRCm39)	splice site	probably null
IGL02980:Stk25	UTSW	1	93,555,390 (GRCm39)	missense	probably damaging	1.00
PIT4531001:Stk25	UTSW	1	93,552,346 (GRCm39)	missense	probably benign
R0240:Stk25	UTSW	1	93,554,782 (GRCm39)	missense	probably damaging	1.00
R0240:Stk25	UTSW	1	93,554,782 (GRCm39)	missense	probably damaging	1.00
R0555:Stk25	UTSW	1	93,552,313 (GRCm39)	missense	probably benign	0.00
R1178:Stk25	UTSW	1	93,551,111 (GRCm39)	unclassified	probably benign
R1406:Stk25	UTSW	1	93,552,875 (GRCm39)	unclassified	probably benign
R1493:Stk25	UTSW	1	93,553,322 (GRCm39)	missense	probably benign	0.04
R2875:Stk25	UTSW	1	93,556,973 (GRCm39)	missense	possibly damaging	0.91
R4657:Stk25	UTSW	1	93,553,378 (GRCm39)	unclassified	probably benign
R4686:Stk25	UTSW	1	93,551,142 (GRCm39)	splice site	probably null
R5089:Stk25	UTSW	1	93,552,330 (GRCm39)	missense	probably benign	0.05
R5493:Stk25	UTSW	1	93,563,031 (GRCm39)	missense	probably benign
R6013:Stk25	UTSW	1	93,553,181 (GRCm39)	critical splice donor site	probably null
R8723:Stk25	UTSW	1	93,553,666 (GRCm39)	missense	probably damaging	1.00
R8905:Stk25	UTSW	1	93,556,929 (GRCm39)	missense	probably damaging	1.00
R9249:Stk25	UTSW	1	93,552,806 (GRCm39)	missense	probably benign
R9274:Stk25	UTSW	1	93,552,806 (GRCm39)	missense	probably benign
X0063:Stk25	UTSW	1	93,553,683 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATGCCCTAGACAGTGGACAG -3'
(R):5'- GTGAGGGTGGAATTCAGCTC -3'

Sequencing Primer
(F):5'- GTGATAGTCAAAAGGCCCTGTCC -3'
(R):5'- GGAATTCAGCTCTGACTTTGTC -3'

Posted On

2015-10-08