Mutagenetix > Incidental Mutations

Incidental Mutation 'R4659:Nhlrc2'

352721

Institutional Source

Beutler Lab

Gene Symbol

Nhlrc2

Ensembl Gene

ENSMUSG00000025078

Gene Name

NHL repeat containing 2

Synonyms

MMRRC Submission

041919-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R4659 (G1)

Quality Score

205

Status

Validated

Chromosome

Chromosomal Location

56548261-56598846 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 56576267 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 341 (V341A)

Ref Sequence

ENSEMBL: ENSMUSP00000071370 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071423]

AlphaFold

Q8BZW8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000071423
AA Change: V341A

PolyPhen 2 Score 0.863 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000071370
Gene: ENSMUSG00000025078
AA Change: V341A

Domain	Start	End	E-Value	Type
Pfam:Thioredoxin_8	78	174	2.7e-14	PFAM
LY	216	258	8.44e0	SMART
Pfam:NHL	278	304	2.3e-9	PFAM
low complexity region	321	331	N/A	INTRINSIC
Blast:LY	402	446	5e-8	BLAST
LY	467	509	1.91e0	SMART
Pfam:NHL	530	558	1.2e-9	PFAM

Meta Mutation Damage Score

0.2407

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

96% (74/77)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2410089E03Rik	G	T	15: 8,216,276		probably benign	Het
Abcc9	C	A	6: 142,672,595		probably null	Het
Ankrd22	C	T	19: 34,125,568	V118I	probably damaging	Het
Aoc1	A	T	6: 48,906,076	E295D	probably benign	Het
Arap2	T	C	5: 62,654,126	N1114S	possibly damaging	Het
AU021092	C	G	16: 5,212,147	A335P	probably damaging	Het
Carhsp1	T	C	16: 8,664,265	T51A	probably benign	Het
Ccdc144b	T	C	3: 36,025,954	D218G	possibly damaging	Het
Cdc42bpb	T	C	12: 111,339,891	D152G	probably damaging	Het
Cep70	T	A	9: 99,296,341	D497E	possibly damaging	Het
Chrm5	T	C	2: 112,479,757	N338S	probably benign	Het
Cldn8	G	A	16: 88,562,408	H210Y	probably benign	Het
Clhc1	T	A	11: 29,578,229	*586K	probably null	Het
Dopey1	T	A	9: 86,502,032		probably benign	Het
Dync1h1	T	C	12: 110,628,767	F1371S	possibly damaging	Het
Eif6	A	G	2: 155,826,181	I46T	probably damaging	Het
Esco2	G	A	14: 65,826,586	T383M	possibly damaging	Het
Exoc8	T	C	8: 124,897,532	D32G	probably damaging	Het
Fam149b	G	T	14: 20,367,873	S216I	probably benign	Het
Fam219a	T	C	4: 41,521,645	D87G	probably null	Het
Fbxw26	A	T	9: 109,744,871	V71D	probably damaging	Het
Gabra4	T	A	5: 71,641,144	K164M	probably damaging	Het
Gm8603	G	A	17: 13,517,028		noncoding transcript	Het
Gnmt	A	G	17: 46,725,966	F239S	probably damaging	Het
Gpsm1	G	A	2: 26,319,831		probably benign	Het
Jam2	G	A	16: 84,812,952	V151M	probably damaging	Het
Kcnj1	A	T	9: 32,394,148	D2V	probably benign	Het
Limch1	C	T	5: 67,027,557	R797C	probably damaging	Het
Lrrc9	T	A	12: 72,470,264	F597I	probably damaging	Het
Lrriq3	T	A	3: 155,129,453	I275N	possibly damaging	Het
Mcoln1	T	A	8: 3,510,840	S387R	probably damaging	Het
Mgst3	T	A	1: 167,377,279	Q58L	probably damaging	Het
Mical1	G	A	10: 41,486,936		probably benign	Het
Mmp3	C	A	9: 7,453,673	D431E	probably benign	Het
Mx1	T	C	16: 97,455,239		probably null	Het
Myo7a	A	G	7: 98,085,466	L607P	probably damaging	Het
Myt1l	A	G	12: 29,849,457	N153D	probably damaging	Het
Nfu1	A	T	6: 87,019,426	T120S	probably damaging	Het
Notch1	T	C	2: 26,470,889	E1148G	probably damaging	Het
Nqo1	C	T	8: 107,391,044		probably null	Het
Nwd1	T	A	8: 72,695,321	D998E	probably benign	Het
Olfr1049	G	A	2: 86,255,013	Q227*	probably null	Het
Oxct2a	T	C	4: 123,322,680	I303V	probably benign	Het
Parp10	A	T	15: 76,242,985	D58E	probably damaging	Het
Pcdha6	T	A	18: 36,969,239	V495E	probably damaging	Het
Pitrm1	T	A	13: 6,553,182	S88R	probably benign	Het
Pxdn	T	C	12: 29,994,553	V510A	probably benign	Het
Ranbp17	T	A	11: 33,266,288	D820V	probably damaging	Het
Sec24c	G	T	14: 20,683,144	G180C	probably damaging	Het
Serpina3n	T	C	12: 104,413,493	S382P	probably benign	Het
Sestd1	A	T	2: 77,212,499	M237K	probably null	Het
Sf3a2	T	C	10: 80,803,584	I136T	probably damaging	Het
Sh3tc2	A	G	18: 61,974,509	Y197C	probably benign	Het
Speer4b	T	C	5: 27,497,895	K204E	probably benign	Het
Speer4f1	A	C	5: 17,476,223	E33A	possibly damaging	Het
Sspo	T	A	6: 48,484,213	D3529E	probably damaging	Het
Stard13	T	C	5: 151,062,788	D419G	probably benign	Het
Tg	A	G	15: 66,673,920	S164G	possibly damaging	Het
Thap12	A	G	7: 98,710,091		probably benign	Het
Thsd1	C	A	8: 22,259,298	Y667*	probably null	Het
Tnks	A	C	8: 34,849,311	Y885D	possibly damaging	Het
Ttll3	A	G	6: 113,414,141	I896V	probably benign	Het
Txnip	T	G	3: 96,559,427	F190C	probably damaging	Het
Urb1	T	C	16: 90,776,129	D1005G	probably damaging	Het
Usp3	T	C	9: 66,527,070		probably null	Het
Usp54	G	T	14: 20,564,992	Q794K	probably damaging	Het
Xrn2	A	G	2: 147,061,474	Q798R	probably benign	Het
Zfp189	A	G	4: 49,530,342	I482V	probably benign	Het
Zfp28	A	G	7: 6,393,507	N314D	probably benign	Het
Zmym4	A	G	4: 126,948,428		probably null	Het

Other mutations in Nhlrc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01307:Nhlrc2	APN	19	56551799	nonsense	probably null
IGL01524:Nhlrc2	APN	19	56576155	missense	probably benign	0.39
IGL01570:Nhlrc2	APN	19	56574787	missense	possibly damaging	0.87
IGL01653:Nhlrc2	APN	19	56570850	missense	probably benign	0.25
IGL02256:Nhlrc2	APN	19	56597361	missense	probably benign	0.10
IGL02303:Nhlrc2	APN	19	56574848	missense	probably damaging	1.00
IGL02349:Nhlrc2	APN	19	56591719	missense	possibly damaging	0.94
IGL02501:Nhlrc2	APN	19	56570654	nonsense	probably null
R0270:Nhlrc2	UTSW	19	56551870	missense	probably damaging	1.00
R0454:Nhlrc2	UTSW	19	56570527	missense	probably damaging	1.00
R2022:Nhlrc2	UTSW	19	56597278	missense	probably benign	0.06
R3854:Nhlrc2	UTSW	19	56588271	critical splice donor site	probably null
R3855:Nhlrc2	UTSW	19	56588271	critical splice donor site	probably null
R3856:Nhlrc2	UTSW	19	56588271	critical splice donor site	probably null
R4767:Nhlrc2	UTSW	19	56570466	missense	probably benign	0.03
R4992:Nhlrc2	UTSW	19	56570534	missense	probably benign	0.00
R5877:Nhlrc2	UTSW	19	56570584	missense	probably damaging	1.00
R6191:Nhlrc2	UTSW	19	56570859	missense	probably benign	0.00
R6755:Nhlrc2	UTSW	19	56591784	missense	probably benign	0.12
R7164:Nhlrc2	UTSW	19	56592499	missense	probably damaging	1.00
R7507:Nhlrc2	UTSW	19	56597378	missense	not run
R7609:Nhlrc2	UTSW	19	56594896	missense	probably benign
R8811:Nhlrc2	UTSW	19	56594912	missense	probably benign	0.03
R8849:Nhlrc2	UTSW	19	56591752	missense	possibly damaging	0.72

Predicted Primers

PCR Primer
(F):5'- GCCTTCTATGACACTGTGTTCAG -3'
(R):5'- TGCCTTTGCTCTAAACAATGAGC -3'

Sequencing Primer
(F):5'- TGACACTGTGTTCAGATACTCAG -3'
(R):5'- ACAGAAAGGTTTCTCTGTGTAGCTC -3'

Posted On

2015-10-08