Mutagenetix > Incidental Mutation

Incidental Mutation 'R4660:Ddx10'

352778

Institutional Source

Beutler Lab

Gene Symbol

Ddx10

Ensembl Gene

ENSMUSG00000053289

Gene Name

DEAD box helicase 10

Synonyms

4632415A01Rik, DEAD (Asp-Glu-Ala-Asp) box polypeptide 10

MMRRC Submission

041920-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.959) question?

Stock #

R4660 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

53009935-53159353 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 53147698 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000065198 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065630]

AlphaFold

Q80Y44

Predicted Effect

probably null
Transcript: ENSMUST00000065630

SMART Domains

Protein: ENSMUSP00000065198
Gene: ENSMUSG00000053289

Domain	Start	End	E-Value	Type
low complexity region	24	43	N/A	INTRINSIC
DEXDc	88	291	1.74e-53	SMART
HELICc	327	410	8.48e-25	SMART
DUF4217	450	513	6.06e-25	SMART
low complexity region	577	594	N/A	INTRINSIC
low complexity region	627	637	N/A	INTRINSIC
low complexity region	658	680	N/A	INTRINSIC
low complexity region	748	773	N/A	INTRINSIC

Meta Mutation Damage Score

0.9502

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 95.0%

Validation Efficiency

96% (102/106)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, and it may be involved in ribosome assembly. Fusion of this gene and the nucleoporin gene, NUP98, by inversion 11 (p15q22) chromosome translocation is found in the patients with de novo or therapy-related myeloid malignancies. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a spontaneous allele exhibit craniofacial defects, including decreased cranium length, cleft palate, and short snout, and show reduced body size, body weight, lean body mass, and bone mineral content. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adra1d	T	C	2: 131,403,062 (GRCm39)	T343A	probably damaging	Het
Angptl4	A	T	17: 33,996,249 (GRCm39)		probably benign	Het
Antxr2	A	T	5: 98,151,913 (GRCm39)		probably null	Het
Ap1b1	T	A	11: 4,966,760 (GRCm39)	V145E	probably damaging	Het
Asns	G	T	6: 7,678,012 (GRCm39)	N355K	probably benign	Het
Asxl3	A	G	18: 22,649,534 (GRCm39)	T508A	probably benign	Het
B4galt7	T	A	13: 55,752,111 (GRCm39)	V54D	possibly damaging	Het
Bach2	C	T	4: 32,562,777 (GRCm39)	P415S	probably benign	Het
Bbs9	G	A	9: 22,490,063 (GRCm39)	R278Q	probably benign	Het
Blzf1	C	T	1: 164,134,062 (GRCm39)		probably benign	Het
Btd	A	T	14: 31,389,760 (GRCm39)	T494S	probably benign	Het
Casp9	C	T	4: 141,540,934 (GRCm39)	T434I	probably benign	Het
Cavin2	T	C	1: 51,340,510 (GRCm39)	S396P	probably benign	Het
Ccnk	C	T	12: 108,168,575 (GRCm39)		probably benign	Het
Cldn8	G	A	16: 88,359,296 (GRCm39)	H210Y	probably benign	Het
Clip1	G	A	5: 123,717,437 (GRCm39)	T1284I	probably damaging	Het
Coch	T	C	12: 51,642,268 (GRCm39)	V80A	probably benign	Het
Cttnbp2	A	G	6: 18,406,536 (GRCm39)	S1052P	probably benign	Het
Cyp2j7	C	T	4: 96,083,579 (GRCm39)	R457K	probably benign	Het
Dalrd3	T	C	9: 108,447,568 (GRCm39)	S129P	probably benign	Het
Dnah7b	A	T	1: 46,328,696 (GRCm39)	T3143S	probably damaging	Het
Dynlt1b	A	G	17: 6,699,279 (GRCm39)	T10A	probably benign	Het
Eif2s2	G	A	2: 154,730,189 (GRCm39)	T36I	probably benign	Het
Fam118b	A	T	9: 35,146,551 (GRCm39)	H105Q	possibly damaging	Het
Galntl5	T	A	5: 25,408,377 (GRCm39)	I250N	probably damaging	Het
Gm11544	C	T	11: 94,736,306 (GRCm39)		noncoding transcript	Het
Gm5709	C	T	3: 59,526,124 (GRCm39)		noncoding transcript	Het
Golgb1	T	A	16: 36,707,980 (GRCm39)	I107N	probably damaging	Het
Gpld1	T	C	13: 25,166,586 (GRCm39)		probably null	Het
Grik1	T	A	16: 87,720,019 (GRCm39)	T768S	probably damaging	Het
H2-T23	T	G	17: 36,341,108 (GRCm39)	Q349P	probably damaging	Het
Ing3	A	T	6: 21,973,710 (GRCm39)		probably benign	Het
Iqgap3	T	G	3: 88,027,483 (GRCm39)	L702R	probably damaging	Het
Itga8	A	G	2: 12,270,069 (GRCm39)	V139A	probably damaging	Het
Jam2	G	A	16: 84,609,840 (GRCm39)	V151M	probably damaging	Het
Kbtbd12	T	C	6: 88,594,772 (GRCm39)	I353V	probably benign	Het
Kif27	T	C	13: 58,471,730 (GRCm39)	E786G	probably damaging	Het
Lingo4	T	A	3: 94,310,672 (GRCm39)	S537T	probably benign	Het
Lipo3	C	T	19: 33,598,360 (GRCm39)		probably benign	Het
Lrrc3	G	T	10: 77,729,866 (GRCm39)		probably benign	Het
Ltbp3	T	A	19: 5,798,814 (GRCm39)		probably null	Het
Lyg1	T	A	1: 37,985,942 (GRCm39)		probably benign	Het
Mcm9	T	C	10: 53,424,623 (GRCm39)	I656V	probably benign	Het
Mfsd8	T	A	3: 40,776,372 (GRCm39)	I427F	probably benign	Het
Mga	T	A	2: 119,769,104 (GRCm39)		probably benign	Het
Miga1	A	G	3: 151,993,155 (GRCm39)	L422P	probably damaging	Het
Msantd3	A	G	4: 48,552,536 (GRCm39)	I42V	probably benign	Het
Mybbp1a	T	C	11: 72,336,538 (GRCm39)	V510A	probably benign	Het
Nccrp1	G	T	7: 28,245,760 (GRCm39)	P135T	probably damaging	Het
Neb	T	A	2: 52,145,600 (GRCm39)	M2975L	possibly damaging	Het
Nfxl1	A	T	5: 72,710,011 (GRCm39)	I171N	probably damaging	Het
Odad2	A	G	18: 7,211,609 (GRCm39)	V755A	possibly damaging	Het
Or10q3	T	C	19: 11,848,412 (GRCm39)	H56R	possibly damaging	Het
Or12j5	A	T	7: 140,083,933 (GRCm39)	F146L	probably benign	Het
Or13a19	T	C	7: 139,903,325 (GRCm39)	F238L	possibly damaging	Het
Otop1	T	G	5: 38,457,368 (GRCm39)	S376A	possibly damaging	Het
Pdgfra	T	C	5: 75,322,932 (GRCm39)	V10A	possibly damaging	Het
Pgs1	T	C	11: 117,910,503 (GRCm39)	V538A	probably damaging	Het
Ppa2	A	T	3: 133,032,445 (GRCm39)	T97S	probably damaging	Het
Pramel22	T	A	4: 143,380,847 (GRCm39)	Y392F	probably benign	Het
Pramel26	A	G	4: 143,538,435 (GRCm39)	S179P	probably benign	Het
Prdm10	G	A	9: 31,238,624 (GRCm39)	C172Y	probably damaging	Het
Prrc2c	G	A	1: 162,508,464 (GRCm39)	P1091L	probably damaging	Het
Pthlh	G	A	6: 147,158,796 (GRCm39)	R55C	probably damaging	Het
Ptpn9	A	T	9: 56,943,782 (GRCm39)	T105S	probably benign	Het
Rundc1	T	A	11: 101,324,830 (GRCm39)	V512E	possibly damaging	Het
Scrib	G	A	15: 75,937,185 (GRCm39)	S307L	probably damaging	Het
Sec23ip	A	G	7: 128,352,010 (GRCm39)	S26G	probably null	Het
Sec61a2	A	G	2: 5,878,504 (GRCm39)		probably benign	Het
Sema3c	T	C	5: 17,877,511 (GRCm39)	V206A	probably damaging	Het
Sgk2	C	T	2: 162,839,763 (GRCm39)	H124Y	possibly damaging	Het
Slc26a6	C	T	9: 108,738,540 (GRCm39)	T592I	probably damaging	Het
Slc5a11	T	C	7: 122,864,486 (GRCm39)	Y361H	probably damaging	Het
Smc6	T	C	12: 11,324,008 (GRCm39)	V51A	probably damaging	Het
Stab1	A	T	14: 30,876,872 (GRCm39)	N817K	possibly damaging	Het
Swt1	A	T	1: 151,283,348 (GRCm39)	D336E	probably benign	Het
Taf13	T	A	3: 108,480,293 (GRCm39)		probably benign	Het
Tmub2	T	C	11: 102,175,845 (GRCm39)		probably benign	Het
Tnf	A	G	17: 35,419,156 (GRCm39)	S209P	probably benign	Het
Try10	A	G	6: 41,334,761 (GRCm39)	Y229C	probably damaging	Het
Ttbk1	G	T	17: 46,788,714 (GRCm39)	Y183*	probably null	Het
Ttc17	A	T	2: 94,194,774 (GRCm39)	I533N	possibly damaging	Het
Tubb6	C	T	18: 67,535,016 (GRCm39)	P305L	probably damaging	Het
Tulp3	G	A	6: 128,300,017 (GRCm39)		probably benign	Het
Usp9x	A	G	X: 12,989,747 (GRCm39)	R776G	possibly damaging	Het
Virma	T	C	4: 11,513,505 (GRCm39)	V453A	probably damaging	Het
Vmn2r103	A	T	17: 20,032,077 (GRCm39)	N617I	probably damaging	Het
Xirp1	G	T	9: 119,846,058 (GRCm39)	L942M	probably damaging	Het
Zc3h7b	T	G	15: 81,676,451 (GRCm39)	V731G	probably benign	Het
Zfp534	C	T	4: 147,759,175 (GRCm39)	G498D	probably benign	Het
Zfp639	T	C	3: 32,574,679 (GRCm39)	Y435H	probably damaging	Het
Zxdc	A	G	6: 90,355,820 (GRCm39)	H443R	probably damaging	Het

Other mutations in Ddx10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00763:Ddx10	APN	9	53,071,326 (GRCm39)	splice site	probably benign
IGL01111:Ddx10	APN	9	53,071,248 (GRCm39)	missense	possibly damaging	0.73
IGL01773:Ddx10	APN	9	53,115,430 (GRCm39)	missense	possibly damaging	0.94
IGL01837:Ddx10	APN	9	53,140,498 (GRCm39)	missense	probably benign	0.16
IGL02036:Ddx10	APN	9	53,115,483 (GRCm39)	missense	probably benign	0.00
IGL02236:Ddx10	APN	9	53,146,682 (GRCm39)	missense	probably damaging	1.00
IGL02939:Ddx10	APN	9	53,115,579 (GRCm39)	missense	possibly damaging	0.63
IGL03294:Ddx10	APN	9	53,028,452 (GRCm39)	critical splice donor site	probably null
R0279:Ddx10	UTSW	9	53,146,604 (GRCm39)	missense	probably damaging	1.00
R1439:Ddx10	UTSW	9	53,151,787 (GRCm39)	missense	probably damaging	1.00
R1501:Ddx10	UTSW	9	53,145,297 (GRCm39)	missense	possibly damaging	0.85
R1529:Ddx10	UTSW	9	53,028,499 (GRCm39)	nonsense	probably null
R1548:Ddx10	UTSW	9	53,060,861 (GRCm39)	critical splice acceptor site	probably null
R1717:Ddx10	UTSW	9	53,071,253 (GRCm39)	missense	probably benign	0.25
R1720:Ddx10	UTSW	9	53,149,371 (GRCm39)	missense	probably damaging	1.00
R1781:Ddx10	UTSW	9	53,118,845 (GRCm39)	missense	probably damaging	1.00
R2005:Ddx10	UTSW	9	53,151,775 (GRCm39)	critical splice donor site	probably null
R2007:Ddx10	UTSW	9	53,124,578 (GRCm39)	missense	probably benign	0.06
R2073:Ddx10	UTSW	9	53,151,805 (GRCm39)	missense	probably benign	0.28
R2075:Ddx10	UTSW	9	53,151,805 (GRCm39)	missense	probably benign	0.28
R2133:Ddx10	UTSW	9	53,060,812 (GRCm39)	missense	probably benign	0.13
R4668:Ddx10	UTSW	9	53,010,513 (GRCm39)	missense	possibly damaging	0.55
R4706:Ddx10	UTSW	9	53,145,231 (GRCm39)	missense	probably damaging	1.00
R4814:Ddx10	UTSW	9	53,115,405 (GRCm39)	missense	possibly damaging	0.54
R5394:Ddx10	UTSW	9	53,145,157 (GRCm39)	nonsense	probably null
R5655:Ddx10	UTSW	9	53,120,987 (GRCm39)	critical splice donor site	probably null
R5874:Ddx10	UTSW	9	53,140,498 (GRCm39)	missense	possibly damaging	0.95
R6341:Ddx10	UTSW	9	53,115,551 (GRCm39)	missense	probably benign	0.00
R6534:Ddx10	UTSW	9	53,134,988 (GRCm39)	missense	probably damaging	1.00
R6801:Ddx10	UTSW	9	53,159,207 (GRCm39)	nonsense	probably null
R6994:Ddx10	UTSW	9	53,115,411 (GRCm39)	missense	probably damaging	0.99
R7155:Ddx10	UTSW	9	53,028,588 (GRCm39)	missense	probably benign	0.00
R7380:Ddx10	UTSW	9	53,151,786 (GRCm39)	missense	probably damaging	1.00
R7753:Ddx10	UTSW	9	53,136,904 (GRCm39)	missense	probably damaging	1.00
R8101:Ddx10	UTSW	9	53,136,820 (GRCm39)	missense	probably damaging	0.98
R8782:Ddx10	UTSW	9	53,146,588 (GRCm39)	missense	probably damaging	0.99
R8962:Ddx10	UTSW	9	53,149,377 (GRCm39)	missense	probably damaging	1.00
R8998:Ddx10	UTSW	9	53,140,534 (GRCm39)	missense	possibly damaging	0.64
R8999:Ddx10	UTSW	9	53,140,534 (GRCm39)	missense	possibly damaging	0.64
R9283:Ddx10	UTSW	9	53,146,656 (GRCm39)	missense	probably benign	0.01
X0019:Ddx10	UTSW	9	53,145,296 (GRCm39)	missense	probably damaging	1.00
X0063:Ddx10	UTSW	9	53,136,873 (GRCm39)	missense	probably damaging	1.00
Z1177:Ddx10	UTSW	9	53,115,811 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TTCTCTTTCCCAAAGCATGCAAAC -3'
(R):5'- TCATCTTCAAGGTGTTGGAAGCC -3'

Sequencing Primer
(F):5'- GATAGCCTGTCCATCTGTCTGAAAG -3'
(R):5'- CAAGGTGTTGGAAGCCTTATACC -3'

Posted On

2015-10-08