Mutagenetix > Incidental Mutation

Incidental Mutation 'R4684:Cobll1'

353488

Institutional Source

Beutler Lab

Gene Symbol

Cobll1

Ensembl Gene

ENSMUSG00000034903

Gene Name

Cobl-like 1

Synonyms

D430044D16Rik, Coblr1

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.352) question?

Stock #

R4684 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

65088339-65239403 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 65099028 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Serine to Arginine at position 688 (S688R)

Ref Sequence

ENSEMBL: ENSMUSP00000099787 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090896] [ENSMUST00000102726] [ENSMUST00000112429] [ENSMUST00000112430] [ENSMUST00000112431]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000090896
AA Change: S651R

PolyPhen 2 Score 0.526 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000088412
Gene: ENSMUSG00000034903
AA Change: S651R

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	1.3e-38	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	426	438	N/A	INTRINSIC
low complexity region	1023	1034	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102726
AA Change: S688R

PolyPhen 2 Score 0.897 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000099787
Gene: ENSMUSG00000034903
AA Change: S688R

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	5.6e-39	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1060	1071	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112429
AA Change: S689R

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108048
Gene: ENSMUSG00000034903
AA Change: S689R

Domain	Start	End	E-Value	Type
Pfam:Cobl	148	239	5.4e-49	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1061	1072	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112430
AA Change: S650R

PolyPhen 2 Score 0.826 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108049
Gene: ENSMUSG00000034903
AA Change: S650R

Domain	Start	End	E-Value	Type
low complexity region	146	157	N/A	INTRINSIC
Pfam:Cobl	185	263	1.3e-38	PFAM
low complexity region	331	342	N/A	INTRINSIC
low complexity region	425	437	N/A	INTRINSIC
low complexity region	1022	1033	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112431
AA Change: S689R

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108050
Gene: ENSMUSG00000034903
AA Change: S689R

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	5.6e-39	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1061	1072	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155768

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310039H08Rik	T	C	17: 46,772,946 (GRCm38)	V45A	probably benign	Het
4921509C19Rik	A	G	2: 151,471,871 (GRCm38)	I629T	unknown	Het
4933402N03Rik	T	C	7: 131,138,684 (GRCm38)	R268G	probably damaging	Het
Abca13	A	T	11: 9,434,193 (GRCm38)	R3882*	probably null	Het
Adamts3	T	G	5: 89,703,007 (GRCm38)	T558P	probably damaging	Het
Ano2	A	G	6: 125,790,341 (GRCm38)	N214S	probably benign	Het
Arhgef4	A	T	1: 34,811,785 (GRCm38)		probably null	Het
Boc	C	T	16: 44,500,380 (GRCm38)	A306T	probably benign	Het
Capn10	T	C	1: 92,943,781 (GRCm38)	F367S	probably damaging	Het
Ccdc6	T	C	10: 70,189,256 (GRCm38)		probably benign	Het
Cpxm2	G	T	7: 132,049,038 (GRCm38)	P631Q	possibly damaging	Het
Cyp2c68	A	G	19: 39,699,335 (GRCm38)	V406A	possibly damaging	Het
Cyp4a30b	T	A	4: 115,455,003 (GRCm38)	Y118N	probably damaging	Het
Dgki	A	T	6: 37,299,846 (GRCm38)		probably benign	Het
Disp2	A	G	2: 118,792,756 (GRCm38)	N1323S	probably damaging	Het
Dock1	T	A	7: 134,724,409 (GRCm38)	Y42*	probably null	Het
Eps8l1	C	A	7: 4,473,945 (GRCm38)	P471Q	probably damaging	Het
Fam20a	A	C	11: 109,721,687 (GRCm38)	L10R	unknown	Het
Fpr-rs4	T	A	17: 18,022,184 (GRCm38)	I151K	probably damaging	Het
Gga1	C	A	15: 78,885,309 (GRCm38)	P161T	probably damaging	Het
Gm8909	A	T	17: 36,165,858 (GRCm38)	H241Q	possibly damaging	Het
Gm9923	T	A	10: 72,309,476 (GRCm38)	Y52*	probably null	Het
Gucy2g	A	G	19: 55,206,256 (GRCm38)	F910L	probably damaging	Het
Helz	T	C	11: 107,649,145 (GRCm38)	V315A	probably damaging	Het
Hk2	T	C	6: 82,739,648 (GRCm38)	Y301C	probably damaging	Het
Htt	C	T	5: 34,852,765 (GRCm38)	P1521S	probably damaging	Het
Iah1	T	C	12: 21,316,433 (GRCm38)	M1T	probably null	Het
Ik	T	C	18: 36,752,414 (GRCm38)	S287P	probably damaging	Het
Itga1	T	A	13: 115,049,370 (GRCm38)	D32V	probably damaging	Het
Itpr2	A	G	6: 146,373,173 (GRCm38)	F837S	probably damaging	Het
Klk14	A	G	7: 43,691,968 (GRCm38)	I15V	probably benign	Het
Kng2	T	C	16: 22,987,641 (GRCm38)	I603V	possibly damaging	Het
Lama1	T	C	17: 67,773,778 (GRCm38)	I1267T	possibly damaging	Het
Lrp1b	A	C	2: 40,922,304 (GRCm38)	L2430V	probably benign	Het
Lrrn3	T	G	12: 41,454,244 (GRCm38)	K25Q	possibly damaging	Het
Lta4h	T	A	10: 93,468,816 (GRCm38)	N233K	probably benign	Het
Mapk13	T	C	17: 28,770,049 (GRCm38)	I53T	probably damaging	Het
Mdn1	T	C	4: 32,666,430 (GRCm38)	F123L	probably damaging	Het
Myh4	G	C	11: 67,245,811 (GRCm38)	D472H	probably damaging	Het
Nipa2	A	T	7: 55,935,826 (GRCm38)	N121K	probably benign	Het
Nostrin	C	T	2: 69,183,924 (GRCm38)	T408M	probably benign	Het
Oosp2	C	T	19: 11,649,653 (GRCm38)	R102H	probably damaging	Het
Or1j18	A	G	2: 36,734,674 (GRCm38)	M118V	probably damaging	Het
Or4k15b	T	C	14: 50,034,830 (GRCm38)	D191G	probably damaging	Het
Osgin2	T	A	4: 16,001,946 (GRCm38)	I202L	probably benign	Het
Pbld2	C	A	10: 63,057,697 (GRCm38)	R271S	probably damaging	Het
Pex6	C	T	17: 46,712,101 (GRCm38)	T201I	probably benign	Het
Pilra	T	C	5: 137,835,515 (GRCm38)	I96M	probably damaging	Het
Pllp	T	A	8: 94,677,278 (GRCm38)	D47V	possibly damaging	Het
Plxna2	A	G	1: 194,762,594 (GRCm38)	S765G	probably benign	Het
Prkca	A	T	11: 107,961,608 (GRCm38)	Y100N	probably damaging	Het
Prkg1	T	A	19: 31,664,179 (GRCm38)	K35*	probably null	Het
Psmc2	A	G	5: 21,803,265 (GRCm38)	D389G	possibly damaging	Het
Rnf213	A	G	11: 119,441,125 (GRCm38)	T2387A	probably damaging	Het
Ros1	T	C	10: 52,129,096 (GRCm38)	N914S	probably damaging	Het
Ruvbl1	C	A	6: 88,491,599 (GRCm38)	T367K	probably benign	Het
Scube2	C	T	7: 109,810,713 (GRCm38)	R525H	probably damaging	Het
Sec14l4	T	C	11: 4,035,200 (GRCm38)		probably null	Het
Secisbp2l	T	C	2: 125,745,942 (GRCm38)	D751G	probably damaging	Het
Setd3	T	C	12: 108,108,690 (GRCm38)	D402G	probably benign	Het
Slc15a2	T	A	16: 36,757,849 (GRCm38)	K359N	probably damaging	Het
Slc25a21	A	G	12: 57,196,936 (GRCm38)	S2P	probably benign	Het
Slfn8	A	T	11: 83,017,506 (GRCm38)	H70Q	probably benign	Het
Spef2	T	C	15: 9,647,490 (GRCm38)	I944V	probably benign	Het
Spg11	A	G	2: 122,065,076 (GRCm38)	F1887S	probably damaging	Het
Sptbn4	T	C	7: 27,364,419 (GRCm38)	E879G	probably damaging	Het
Sptbn4	A	T	7: 27,366,735 (GRCm38)	D649E	possibly damaging	Het
Stx5a	C	A	19: 8,743,361 (GRCm38)	R121S	probably damaging	Het
Tbcd	T	C	11: 121,493,771 (GRCm38)	L26P	probably damaging	Het
Tecpr1	T	C	5: 144,207,437 (GRCm38)	D649G	probably benign	Het
Tfam	A	G	10: 71,237,847 (GRCm38)	S32P	probably benign	Het
Tmt1b	G	T	10: 128,960,702 (GRCm38)	C79*	probably null	Het
Trmt44	C	T	5: 35,558,043 (GRCm38)	R642H	probably benign	Het
Trpm3	G	A	19: 22,987,781 (GRCm38)	A1547T	probably benign	Het
Ttll6	T	C	11: 96,153,177 (GRCm38)	V519A	probably benign	Het
Umodl1	T	C	17: 30,998,114 (GRCm38)	F1107L	probably benign	Het
Usp5	A	T	6: 124,817,956 (GRCm38)	V677E	probably damaging	Het
Utp20	A	T	10: 88,807,445 (GRCm38)	L605*	probably null	Het
Utrn	T	C	10: 12,745,240 (GRCm38)	D229G	probably damaging	Het
Uty	A	T	Y: 1,176,502 (GRCm38)	L178*	probably null	Het
Vmn2r88	A	T	14: 51,413,334 (GRCm38)	D168V	possibly damaging	Het
Vps13b	T	C	15: 35,646,178 (GRCm38)	V1476A	probably damaging	Het
Vps13b	C	T	15: 35,841,341 (GRCm38)	H2506Y	probably benign	Het
Vps13b	C	A	15: 35,879,821 (GRCm38)	T3014K	probably benign	Het
Vps37c	T	C	19: 10,712,768 (GRCm38)	V198A	probably benign	Het
Zfc3h1	T	C	10: 115,423,385 (GRCm38)	Y1621H	probably benign	Het
Zfp251	T	C	15: 76,854,407 (GRCm38)	D162G	possibly damaging	Het
Zfp292	T	C	4: 34,807,078 (GRCm38)	T1994A	probably benign	Het
Zfp791	A	G	8: 85,110,930 (GRCm38)	Y102H	probably benign	Het

Other mutations in Cobll1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00789:Cobll1	APN	2	65,126,013 (GRCm38)	missense	probably damaging	1.00
IGL01074:Cobll1	APN	2	65,107,848 (GRCm38)	missense	probably damaging	1.00
IGL01093:Cobll1	APN	2	65,098,237 (GRCm38)	missense	probably damaging	1.00
IGL02411:Cobll1	APN	2	65,097,740 (GRCm38)	missense	probably damaging	1.00
IGL02419:Cobll1	APN	2	65,151,048 (GRCm38)	missense	probably damaging	1.00
IGL02550:Cobll1	APN	2	65,107,863 (GRCm38)	missense	probably damaging	1.00
IGL02607:Cobll1	APN	2	65,151,085 (GRCm38)	missense	probably damaging	0.98
IGL02829:Cobll1	APN	2	65,126,045 (GRCm38)	missense	probably damaging	1.00
IGL02802:Cobll1	UTSW	2	65,098,319 (GRCm38)	missense	probably damaging	0.99
R0313:Cobll1	UTSW	2	65,095,744 (GRCm38)	nonsense	probably null
R0314:Cobll1	UTSW	2	65,089,521 (GRCm38)	missense	possibly damaging	0.81
R0322:Cobll1	UTSW	2	65,102,098 (GRCm38)	missense	possibly damaging	0.84
R0846:Cobll1	UTSW	2	65,102,065 (GRCm38)	splice site	probably null
R1163:Cobll1	UTSW	2	65,098,279 (GRCm38)	missense	probably damaging	0.96
R1242:Cobll1	UTSW	2	65,151,169 (GRCm38)	critical splice acceptor site	probably null
R1364:Cobll1	UTSW	2	65,126,310 (GRCm38)	splice site	probably benign
R1445:Cobll1	UTSW	2	65,099,136 (GRCm38)	missense	probably damaging	1.00
R1610:Cobll1	UTSW	2	65,133,642 (GRCm38)	missense	probably damaging	1.00
R1836:Cobll1	UTSW	2	65,126,236 (GRCm38)	missense	probably damaging	1.00
R2102:Cobll1	UTSW	2	65,098,210 (GRCm38)	missense	probably damaging	1.00
R3154:Cobll1	UTSW	2	65,107,050 (GRCm38)	missense	probably benign	0.00
R4580:Cobll1	UTSW	2	65,151,073 (GRCm38)	missense	probably benign	0.00
R4638:Cobll1	UTSW	2	65,099,237 (GRCm38)	missense	probably benign	0.03
R4906:Cobll1	UTSW	2	65,097,693 (GRCm38)	missense	probably benign	0.01
R4923:Cobll1	UTSW	2	65,099,258 (GRCm38)	missense	possibly damaging	0.87
R5100:Cobll1	UTSW	2	65,125,901 (GRCm38)	missense	probably benign	0.26
R5269:Cobll1	UTSW	2	65,133,771 (GRCm38)	nonsense	probably null
R5419:Cobll1	UTSW	2	65,103,357 (GRCm38)	missense	possibly damaging	0.57
R5637:Cobll1	UTSW	2	65,125,903 (GRCm38)	missense	possibly damaging	0.90
R5745:Cobll1	UTSW	2	65,098,457 (GRCm38)	missense	probably damaging	0.99
R5777:Cobll1	UTSW	2	65,103,268 (GRCm38)	missense	probably benign	0.27
R6303:Cobll1	UTSW	2	65,098,033 (GRCm38)	missense	possibly damaging	0.68
R6471:Cobll1	UTSW	2	65,107,884 (GRCm38)	missense	probably damaging	1.00
R7027:Cobll1	UTSW	2	65,089,503 (GRCm38)	missense	probably benign	0.00
R7132:Cobll1	UTSW	2	65,133,768 (GRCm38)	missense	probably damaging	1.00
R7197:Cobll1	UTSW	2	65,098,538 (GRCm38)	missense	probably benign	0.00
R7365:Cobll1	UTSW	2	65,098,373 (GRCm38)	missense	probably damaging	0.99
R7607:Cobll1	UTSW	2	65,095,857 (GRCm38)	missense	probably benign	0.02
R7899:Cobll1	UTSW	2	65,125,931 (GRCm38)	missense	probably damaging	1.00
R7996:Cobll1	UTSW	2	65,150,985 (GRCm38)	missense	possibly damaging	0.93
R8175:Cobll1	UTSW	2	65,099,231 (GRCm38)	missense	probably benign
R8212:Cobll1	UTSW	2	65,102,080 (GRCm38)	missense	probably benign	0.08
R8549:Cobll1	UTSW	2	65,098,450 (GRCm38)	missense	probably damaging	1.00
R8832:Cobll1	UTSW	2	65,099,258 (GRCm38)	missense	probably damaging	1.00
R9189:Cobll1	UTSW	2	65,150,989 (GRCm38)	missense	probably damaging	1.00
R9253:Cobll1	UTSW	2	65,151,159 (GRCm38)	missense	probably benign	0.10
R9273:Cobll1	UTSW	2	65,099,012 (GRCm38)	missense	probably damaging	1.00
R9309:Cobll1	UTSW	2	65,125,927 (GRCm38)	missense	probably damaging	0.96
R9332:Cobll1	UTSW	2	65,103,172 (GRCm38)	missense	probably benign
R9469:Cobll1	UTSW	2	65,136,430 (GRCm38)	missense	probably damaging	1.00
X0020:Cobll1	UTSW	2	65,103,322 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TGGAGTCTTGCCTATAAAGTGG -3'
(R):5'- CATCTAACAGCATCGCCAGG -3'

Sequencing Primer
(F):5'- CTTTAGGTAAGAAGCAGCTGGATTC -3'
(R):5'- TCGCCAGGACCAGATCAAAAATTG -3'

Posted On

2015-10-21