Mutagenetix > Incidental Mutation

Incidental Mutation 'R4684:Scube2'

353520

Institutional Source

Beutler Lab

Gene Symbol

Scube2

Ensembl Gene

ENSMUSG00000007279

Gene Name

signal peptide, CUB domain, EGF-like 2

Synonyms

ICRFP703B1614Q5.1, Cegf1, ICRFP703N2430Q5.1, 4932442O19Rik

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.527) question?

Stock #

R4684 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

109397897-109464886 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 109409920 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 525 (R525H)

Ref Sequence

ENSEMBL: ENSMUSP00000102339 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000007423] [ENSMUST00000106728] [ENSMUST00000106729]

AlphaFold

Q9JJS0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000007423
AA Change: R651H

PolyPhen 2 Score 0.814 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000007423
Gene: ENSMUSG00000007279
AA Change: R651H

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
EGF_CA	43	83	7.01e-10	SMART
EGF_CA	84	125	1.79e-7	SMART
EGF_CA	126	166	1.5e-9	SMART
EGF	174	212	2.19e-2	SMART
EGF	214	251	4.89e0	SMART
EGF	283	320	5.12e-3	SMART
EGF_CA	321	361	3.7e-9	SMART
EGF_CA	362	400	1.85e-9	SMART
EGF_CA	401	441	2.48e-10	SMART
low complexity region	479	490	N/A	INTRINSIC
low complexity region	577	594	N/A	INTRINSIC
Pfam:GCC2_GCC3	642	692	7.2e-19	PFAM
Pfam:GCC2_GCC3	699	746	2e-16	PFAM
Pfam:GCC2_GCC3	755	802	3.1e-18	PFAM
CUB	807	919	1.23e-19	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000106728
AA Change: R525H

PolyPhen 2 Score 0.958 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000102339
Gene: ENSMUSG00000007279
AA Change: R525H

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
EGF_CA	43	83	7.01e-10	SMART
EGF_CA	84	125	1.79e-7	SMART
EGF_CA	126	166	1.5e-9	SMART
EGF	174	212	2.19e-2	SMART
EGF	214	251	4.89e0	SMART
EGF	283	320	5.12e-3	SMART
EGF_CA	321	361	3.7e-9	SMART
EGF_CA	362	400	1.85e-9	SMART
EGF_CA	401	441	2.48e-10	SMART
low complexity region	451	468	N/A	INTRINSIC
Pfam:GCC2_GCC3	516	566	6.4e-17	PFAM
Pfam:GCC2_GCC3	573	620	3.5e-14	PFAM
Pfam:GCC2_GCC3	629	676	5.4e-16	PFAM
Blast:CUB	678	727	2e-25	BLAST
Blast:CUB	730	796	1e-37	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000106729

SMART Domains

Protein: ENSMUSP00000102340
Gene: ENSMUSG00000007279

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
EGF_CA	43	83	7.01e-10	SMART
EGF_CA	84	125	1.79e-7	SMART
EGF_CA	126	166	1.5e-9	SMART
EGF	174	212	2.19e-2	SMART
EGF	214	251	4.89e0	SMART
EGF	283	320	5.12e-3	SMART
EGF_CA	321	361	3.7e-9	SMART
EGF_CA	362	400	1.85e-9	SMART
EGF_CA	401	441	2.48e-10	SMART
low complexity region	605	622	N/A	INTRINSIC
Pfam:GCC2_GCC3	670	717	1.8e-16	PFAM
Pfam:GCC2_GCC3	726	773	2.7e-18	PFAM
CUB	778	890	1.23e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132113

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138946

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.7%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a null mutation are smaller than controls. Mice also exhibit defective endochondral bone formation and impaired Ihh-mediated chondrocyte differentiation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310039H08Rik	T	C	17: 47,083,872 (GRCm39)	V45A	probably benign	Het
4921509C19Rik	A	G	2: 151,313,791 (GRCm39)	I629T	unknown	Het
4933402N03Rik	T	C	7: 130,740,413 (GRCm39)	R268G	probably damaging	Het
Abca13	A	T	11: 9,384,193 (GRCm39)	R3882*	probably null	Het
Adamts3	T	G	5: 89,850,866 (GRCm39)	T558P	probably damaging	Het
Ano2	A	G	6: 125,767,304 (GRCm39)	N214S	probably benign	Het
Arhgef4	A	T	1: 34,850,866 (GRCm39)		probably null	Het
Boc	C	T	16: 44,320,743 (GRCm39)	A306T	probably benign	Het
Capn10	T	C	1: 92,871,503 (GRCm39)	F367S	probably damaging	Het
Ccdc6	T	C	10: 70,025,086 (GRCm39)		probably benign	Het
Cobll1	G	T	2: 64,929,372 (GRCm39)	S688R	possibly damaging	Het
Cpxm2	G	T	7: 131,650,767 (GRCm39)	P631Q	possibly damaging	Het
Cyp2c68	A	G	19: 39,687,779 (GRCm39)	V406A	possibly damaging	Het
Cyp4a30b	T	A	4: 115,312,200 (GRCm39)	Y118N	probably damaging	Het
Dgki	A	T	6: 37,276,781 (GRCm39)		probably benign	Het
Disp2	A	G	2: 118,623,237 (GRCm39)	N1323S	probably damaging	Het
Dock1	T	A	7: 134,326,138 (GRCm39)	Y42*	probably null	Het
Eps8l1	C	A	7: 4,476,944 (GRCm39)	P471Q	probably damaging	Het
Fam20a	A	C	11: 109,612,513 (GRCm39)	L10R	unknown	Het
Fpr-rs4	T	A	17: 18,242,446 (GRCm39)	I151K	probably damaging	Het
Gga1	C	A	15: 78,769,509 (GRCm39)	P161T	probably damaging	Het
Gm9923	T	A	10: 72,145,306 (GRCm39)	Y52*	probably null	Het
Gucy2g	A	G	19: 55,194,688 (GRCm39)	F910L	probably damaging	Het
H2-T5	A	T	17: 36,476,750 (GRCm39)	H241Q	possibly damaging	Het
Helz	T	C	11: 107,539,971 (GRCm39)	V315A	probably damaging	Het
Hk2	T	C	6: 82,716,629 (GRCm39)	Y301C	probably damaging	Het
Htt	C	T	5: 35,010,109 (GRCm39)	P1521S	probably damaging	Het
Iah1	T	C	12: 21,366,434 (GRCm39)	M1T	probably null	Het
Ik	T	C	18: 36,885,467 (GRCm39)	S287P	probably damaging	Het
Itga1	T	A	13: 115,185,906 (GRCm39)	D32V	probably damaging	Het
Itpr2	A	G	6: 146,274,671 (GRCm39)	F837S	probably damaging	Het
Klk14	A	G	7: 43,341,392 (GRCm39)	I15V	probably benign	Het
Kng2	T	C	16: 22,806,391 (GRCm39)	I603V	possibly damaging	Het
Lama1	T	C	17: 68,080,773 (GRCm39)	I1267T	possibly damaging	Het
Lrp1b	A	C	2: 40,812,316 (GRCm39)	L2430V	probably benign	Het
Lrrn3	T	G	12: 41,504,243 (GRCm39)	K25Q	possibly damaging	Het
Lta4h	T	A	10: 93,304,678 (GRCm39)	N233K	probably benign	Het
Mapk13	T	C	17: 28,989,023 (GRCm39)	I53T	probably damaging	Het
Mdn1	T	C	4: 32,666,430 (GRCm39)	F123L	probably damaging	Het
Myh4	G	C	11: 67,136,637 (GRCm39)	D472H	probably damaging	Het
Nipa2	A	T	7: 55,585,574 (GRCm39)	N121K	probably benign	Het
Nostrin	C	T	2: 69,014,268 (GRCm39)	T408M	probably benign	Het
Oosp2	C	T	19: 11,627,017 (GRCm39)	R102H	probably damaging	Het
Or1j18	A	G	2: 36,624,686 (GRCm39)	M118V	probably damaging	Het
Or4k15b	T	C	14: 50,272,287 (GRCm39)	D191G	probably damaging	Het
Osgin2	T	A	4: 16,001,946 (GRCm39)	I202L	probably benign	Het
Pbld2	C	A	10: 62,893,476 (GRCm39)	R271S	probably damaging	Het
Pex6	C	T	17: 47,023,027 (GRCm39)	T201I	probably benign	Het
Pilra	T	C	5: 137,833,777 (GRCm39)	I96M	probably damaging	Het
Pllp	T	A	8: 95,403,906 (GRCm39)	D47V	possibly damaging	Het
Plxna2	A	G	1: 194,444,902 (GRCm39)	S765G	probably benign	Het
Prkca	A	T	11: 107,852,434 (GRCm39)	Y100N	probably damaging	Het
Prkg1	T	A	19: 31,641,579 (GRCm39)	K35*	probably null	Het
Psmc2	A	G	5: 22,008,263 (GRCm39)	D389G	possibly damaging	Het
Rnf213	A	G	11: 119,331,951 (GRCm39)	T2387A	probably damaging	Het
Ros1	T	C	10: 52,005,192 (GRCm39)	N914S	probably damaging	Het
Ruvbl1	C	A	6: 88,468,581 (GRCm39)	T367K	probably benign	Het
Sec14l4	T	C	11: 3,985,200 (GRCm39)		probably null	Het
Secisbp2l	T	C	2: 125,587,862 (GRCm39)	D751G	probably damaging	Het
Setd3	T	C	12: 108,074,949 (GRCm39)	D402G	probably benign	Het
Slc15a2	T	A	16: 36,578,211 (GRCm39)	K359N	probably damaging	Het
Slc25a21	A	G	12: 57,243,721 (GRCm39)	S2P	probably benign	Het
Slfn8	A	T	11: 82,908,332 (GRCm39)	H70Q	probably benign	Het
Spef2	T	C	15: 9,647,576 (GRCm39)	I944V	probably benign	Het
Spg11	A	G	2: 121,895,557 (GRCm39)	F1887S	probably damaging	Het
Sptbn4	A	T	7: 27,066,160 (GRCm39)	D649E	possibly damaging	Het
Sptbn4	T	C	7: 27,063,844 (GRCm39)	E879G	probably damaging	Het
Stx5a	C	A	19: 8,720,725 (GRCm39)	R121S	probably damaging	Het
Tbcd	T	C	11: 121,384,597 (GRCm39)	L26P	probably damaging	Het
Tecpr1	T	C	5: 144,144,255 (GRCm39)	D649G	probably benign	Het
Tfam	A	G	10: 71,073,677 (GRCm39)	S32P	probably benign	Het
Tmt1b	G	T	10: 128,796,571 (GRCm39)	C79*	probably null	Het
Trmt44	C	T	5: 35,715,387 (GRCm39)	R642H	probably benign	Het
Trpm3	G	A	19: 22,965,145 (GRCm39)	A1547T	probably benign	Het
Ttll6	T	C	11: 96,044,003 (GRCm39)	V519A	probably benign	Het
Umodl1	T	C	17: 31,217,088 (GRCm39)	F1107L	probably benign	Het
Usp5	A	T	6: 124,794,919 (GRCm39)	V677E	probably damaging	Het
Utp20	A	T	10: 88,643,307 (GRCm39)	L605*	probably null	Het
Utrn	T	C	10: 12,620,984 (GRCm39)	D229G	probably damaging	Het
Uty	A	T	Y: 1,176,502 (GRCm39)	L178*	probably null	Het
Vmn2r88	A	T	14: 51,650,791 (GRCm39)	D168V	possibly damaging	Het
Vps13b	T	C	15: 35,646,324 (GRCm39)	V1476A	probably damaging	Het
Vps13b	C	A	15: 35,879,967 (GRCm39)	T3014K	probably benign	Het
Vps13b	C	T	15: 35,841,487 (GRCm39)	H2506Y	probably benign	Het
Vps37c	T	C	19: 10,690,132 (GRCm39)	V198A	probably benign	Het
Zfc3h1	T	C	10: 115,259,290 (GRCm39)	Y1621H	probably benign	Het
Zfp251	T	C	15: 76,738,607 (GRCm39)	D162G	possibly damaging	Het
Zfp292	T	C	4: 34,807,078 (GRCm39)	T1994A	probably benign	Het
Zfp791	A	G	8: 85,837,559 (GRCm39)	Y102H	probably benign	Het

Other mutations in Scube2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Scube2	APN	7	109,407,661 (GRCm39)	missense	probably damaging	1.00
IGL01608:Scube2	APN	7	109,442,461 (GRCm39)	missense	probably benign
IGL02080:Scube2	APN	7	109,451,685 (GRCm39)	missense	probably damaging	1.00
PIT4445001:Scube2	UTSW	7	109,408,387 (GRCm39)	missense	probably benign	0.22
R0020:Scube2	UTSW	7	109,430,095 (GRCm39)	splice site	probably benign
R0020:Scube2	UTSW	7	109,430,095 (GRCm39)	splice site	probably benign
R0106:Scube2	UTSW	7	109,446,115 (GRCm39)	splice site	probably benign
R0230:Scube2	UTSW	7	109,423,971 (GRCm39)	critical splice donor site	probably null
R0255:Scube2	UTSW	7	109,424,079 (GRCm39)	missense	probably damaging	0.98
R0427:Scube2	UTSW	7	109,424,044 (GRCm39)	missense	probably benign	0.00
R0612:Scube2	UTSW	7	109,403,971 (GRCm39)	splice site	probably benign
R0658:Scube2	UTSW	7	109,436,327 (GRCm39)	splice site	probably benign
R0687:Scube2	UTSW	7	109,428,335 (GRCm39)	missense	possibly damaging	0.47
R1087:Scube2	UTSW	7	109,430,882 (GRCm39)	missense	probably damaging	1.00
R1366:Scube2	UTSW	7	109,403,821 (GRCm39)	missense	probably damaging	1.00
R1635:Scube2	UTSW	7	109,442,421 (GRCm39)	missense	possibly damaging	0.90
R1797:Scube2	UTSW	7	109,430,882 (GRCm39)	missense	probably damaging	1.00
R1972:Scube2	UTSW	7	109,408,421 (GRCm39)	missense	probably benign	0.16
R2080:Scube2	UTSW	7	109,407,712 (GRCm39)	missense	possibly damaging	0.77
R2254:Scube2	UTSW	7	109,424,666 (GRCm39)	missense	possibly damaging	0.47
R2315:Scube2	UTSW	7	109,403,908 (GRCm39)	missense	probably damaging	1.00
R2325:Scube2	UTSW	7	109,443,161 (GRCm39)	missense	probably damaging	1.00
R3723:Scube2	UTSW	7	109,407,613 (GRCm39)	splice site	probably benign
R3887:Scube2	UTSW	7	109,442,383 (GRCm39)	splice site	probably benign
R3946:Scube2	UTSW	7	109,456,797 (GRCm39)	missense	possibly damaging	0.81
R4030:Scube2	UTSW	7	109,430,978 (GRCm39)	missense	probably benign	0.09
R4621:Scube2	UTSW	7	109,399,857 (GRCm39)	missense	possibly damaging	0.63
R4736:Scube2	UTSW	7	109,430,412 (GRCm39)	missense	probably benign	0.01
R5096:Scube2	UTSW	7	109,398,451 (GRCm39)	utr 3 prime	probably benign
R5266:Scube2	UTSW	7	109,408,437 (GRCm39)	missense	probably damaging	1.00
R5579:Scube2	UTSW	7	109,409,944 (GRCm39)	missense	probably damaging	1.00
R5669:Scube2	UTSW	7	109,424,646 (GRCm39)	missense	probably benign	0.04
R5838:Scube2	UTSW	7	109,407,651 (GRCm39)	missense	probably damaging	1.00
R5916:Scube2	UTSW	7	109,430,931 (GRCm39)	missense	possibly damaging	0.77
R6056:Scube2	UTSW	7	109,432,220 (GRCm39)	nonsense	probably null
R6731:Scube2	UTSW	7	109,409,944 (GRCm39)	missense	probably damaging	1.00
R6785:Scube2	UTSW	7	109,409,824 (GRCm39)	missense	probably benign
R8197:Scube2	UTSW	7	109,407,684 (GRCm39)	missense	possibly damaging	0.53
R8250:Scube2	UTSW	7	109,463,377 (GRCm39)	missense	probably benign	0.20
R8273:Scube2	UTSW	7	109,408,383 (GRCm39)	missense	probably benign	0.00
R8427:Scube2	UTSW	7	109,399,797 (GRCm39)	missense	probably damaging	1.00
R8882:Scube2	UTSW	7	109,451,680 (GRCm39)	missense	probably damaging	1.00
R9258:Scube2	UTSW	7	109,398,515 (GRCm39)	missense	probably damaging	1.00
R9428:Scube2	UTSW	7	109,428,345 (GRCm39)	missense	probably benign	0.32
R9476:Scube2	UTSW	7	109,430,969 (GRCm39)	missense	probably damaging	1.00
R9510:Scube2	UTSW	7	109,430,969 (GRCm39)	missense	probably damaging	1.00
R9709:Scube2	UTSW	7	109,430,971 (GRCm39)	missense	probably damaging	1.00
Z1177:Scube2	UTSW	7	109,442,408 (GRCm39)	missense	probably damaging	1.00
Z1177:Scube2	UTSW	7	109,437,334 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCATCCAGTGTCTATGGGGAG -3'
(R):5'- ACGCTGTCTTTAAGGGATTTGC -3'

Sequencing Primer
(F):5'- CTGAGTCTAAACAACGACACTGGG -3'
(R):5'- AAGGGATTTGCGTGGGGAG -3'

Posted On

2015-10-21