Mutagenetix > Incidental Mutation

Incidental Mutation 'R4717:Themis'

354141

Institutional Source

Beutler Lab

Gene Symbol

Themis

Ensembl Gene

ENSMUSG00000049109

Gene Name

thymocyte selection associated

Synonyms

Tsepa, Gasp, E430004N04Rik

MMRRC Submission

041984-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.173) question?

Stock #

R4717 (G1)

Quality Score

134

Status

Not validated

Chromosome

Chromosomal Location

28544356-28759814 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 28665748 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Lysine at position 604 (E604K)

Ref Sequence

ENSEMBL: ENSMUSP00000055315 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000056097] [ENSMUST00000060409] [ENSMUST00000105516] [ENSMUST00000159927]

AlphaFold

Q8BGW0

Predicted Effect

probably benign
Transcript: ENSMUST00000056097

SMART Domains

Protein: ENSMUSP00000060129
Gene: ENSMUSG00000049109

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	266	5.2e-59	PFAM
Pfam:CABIT	282	530	3.7e-48	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000060409
AA Change: E604K

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000055315
Gene: ENSMUSG00000049109
AA Change: E604K

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	272	9.3e-52	PFAM
Pfam:CABIT	282	532	5e-62	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105516

SMART Domains

Protein: ENSMUSP00000101155
Gene: ENSMUSG00000049109

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	272	9e-52	PFAM
Pfam:CABIT	282	532	4.9e-62	PFAM
low complexity region	550	564	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000159927

SMART Domains

Protein: ENSMUSP00000123919
Gene: ENSMUSG00000049109

Domain	Start	End	E-Value	Type
Pfam:CABIT	17	91	1.9e-10	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a protein that plays a regulatory role in both positive and negative T-cell selection during late thymocyte development. The protein functions through T-cell antigen receptor signaling, and is necessary for proper lineage commitment and maturation of T-cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2015]
PHENOTYPE: Homozygous null mice have defects in T cell positive selection that leads to very few alpha-beta T cells being found in the periphery. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330159F19Rik	T	C	10: 29,097,783 (GRCm39)	L60P	probably damaging	Het
Acsf2	T	G	11: 94,450,372 (GRCm39)	M512L	probably benign	Het
Ahrr	T	A	13: 74,363,885 (GRCm39)	H312L	probably benign	Het
Akr1c18	T	C	13: 4,186,717 (GRCm39)	M244V	probably benign	Het
Aldh3b2	A	G	19: 4,031,128 (GRCm39)	Y459C	probably damaging	Het
Arhgap29	A	T	3: 121,803,607 (GRCm39)	I796L	possibly damaging	Het
Arrdc4	T	A	7: 68,391,406 (GRCm39)	D287V	probably damaging	Het
Astn2	A	T	4: 65,562,991 (GRCm39)	I930N	possibly damaging	Het
Bace2	T	A	16: 97,238,073 (GRCm39)	L508Q	probably damaging	Het
Baz2a	G	T	10: 127,960,811 (GRCm39)	C1537F	possibly damaging	Het
Cad	A	G	5: 31,224,030 (GRCm39)		probably null	Het
Capn5	A	T	7: 97,773,126 (GRCm39)	I626N	probably benign	Het
Car8	A	T	4: 8,169,685 (GRCm39)	N274K	probably damaging	Het
Casp14	T	C	10: 78,550,958 (GRCm39)	I76V	probably benign	Het
Ccdc88c	A	G	12: 100,882,925 (GRCm39)	V1649A	probably benign	Het
Cemip	A	T	7: 83,596,488 (GRCm39)	I1092N	probably damaging	Het
Clspn	A	G	4: 126,453,849 (GRCm39)	N91D	probably damaging	Het
Cpxm2	A	G	7: 131,656,574 (GRCm39)	Y563H	possibly damaging	Het
Csnk1g2	T	C	10: 80,473,749 (GRCm39)	V72A	probably benign	Het
Cyp46a1	T	C	12: 108,318,285 (GRCm39)		probably null	Het
Cyp4x1	T	C	4: 114,978,902 (GRCm39)	H206R	probably benign	Het
Dapk1	T	A	13: 60,874,476 (GRCm39)		probably null	Het
Ddx1	A	G	12: 13,290,888 (GRCm39)	W76R	probably damaging	Het
Dhx29	G	A	13: 113,083,469 (GRCm39)	R508H	unknown	Het
Dnah2	T	C	11: 69,320,183 (GRCm39)	D3962G	probably benign	Het
Dnajc14	T	A	10: 128,642,113 (GRCm39)	C12S	possibly damaging	Het
Dock1	T	C	7: 134,449,899 (GRCm39)	I804T	probably damaging	Het
Efs	G	T	14: 55,157,801 (GRCm39)	S170Y	probably damaging	Het
Eml4	G	T	17: 83,755,654 (GRCm39)	W295C	probably benign	Het
Fkbp15	A	G	4: 62,226,306 (GRCm39)	S748P	probably damaging	Het
Ghr	T	G	15: 3,349,235 (GRCm39)	I648L	possibly damaging	Het
Gigyf1	T	A	5: 137,523,494 (GRCm39)	I942N	probably damaging	Het
Gpam	T	A	19: 55,064,046 (GRCm39)	E682D	probably benign	Het
Gsr	A	T	8: 34,183,886 (GRCm39)	K383*	probably null	Het
Hapln1	C	A	13: 89,753,579 (GRCm39)	S248R	probably benign	Het
Haus2	G	T	2: 120,449,583 (GRCm39)	R209L	probably benign	Het
Hhatl	A	G	9: 121,618,943 (GRCm39)	F63S	probably damaging	Het
Hmcn1	A	G	1: 150,494,816 (GRCm39)	M4091T	probably benign	Het
Hspb7	A	G	4: 141,149,896 (GRCm39)	D94G	probably damaging	Het
Irf6	T	A	1: 192,849,742 (GRCm39)		probably null	Het
Itgb2	T	A	10: 77,381,878 (GRCm39)	L60*	probably null	Het
Jmjd1c	C	T	10: 66,993,830 (GRCm39)	Q104*	probably null	Het
Kcnh1	A	G	1: 191,959,025 (GRCm39)	D193G	probably damaging	Het
Klhl25	G	T	7: 75,516,528 (GRCm39)	C478F	probably damaging	Het
Klhl3	T	C	13: 58,178,330 (GRCm39)	D267G	probably damaging	Het
L3mbtl4	T	G	17: 68,762,708 (GRCm39)	H80Q	probably null	Het
Lhcgr	C	A	17: 89,049,895 (GRCm39)	V544F	probably benign	Het
Mfsd4a	T	C	1: 131,985,633 (GRCm39)	N168D	probably benign	Het
Mmp3	A	G	9: 7,449,881 (GRCm39)	Q255R	possibly damaging	Het
Mrgprb3	C	A	7: 48,293,000 (GRCm39)	G184C	probably benign	Het
Mtpap	C	T	18: 4,396,394 (GRCm39)	A562V	possibly damaging	Het
Nid1	T	C	13: 13,681,086 (GRCm39)	V1072A	probably benign	Het
Nsf	T	G	11: 103,714,595 (GRCm39)	K728T	probably damaging	Het
Or10ak7	T	C	4: 118,791,626 (GRCm39)	N140D	probably benign	Het
Or12j3	T	C	7: 139,953,328 (GRCm39)	N65S	probably damaging	Het
Or1e17	T	A	11: 73,831,641 (GRCm39)	S190T	possibly damaging	Het
Or2a5	T	C	6: 42,874,158 (GRCm39)	Y258H	probably damaging	Het
Or4k15b	A	T	14: 50,272,821 (GRCm39)	V13E	probably damaging	Het
Pcsk5	A	T	19: 17,502,631 (GRCm39)	C894S	probably damaging	Het
Pde2a	A	G	7: 101,143,879 (GRCm39)	D166G	probably benign	Het
Pfpl	G	A	19: 12,406,618 (GRCm39)	E290K	probably benign	Het
Pi4kb	A	C	3: 94,906,162 (GRCm39)	I570L	probably damaging	Het
Plxnb2	A	T	15: 89,041,622 (GRCm39)	C1727*	probably null	Het
Poln	A	T	5: 34,286,792 (GRCm39)	D125E	possibly damaging	Het
Pomgnt1	A	G	4: 116,011,412 (GRCm39)	D259G	possibly damaging	Het
Prx	A	T	7: 27,216,152 (GRCm39)	M218L	probably benign	Het
Pxn	A	T	5: 115,690,001 (GRCm39)	Q342L	probably damaging	Het
Rhpn2	A	G	7: 35,033,775 (GRCm39)	D3G	possibly damaging	Het
Rnase2b	C	T	14: 51,400,174 (GRCm39)	T85I	possibly damaging	Het
Rnaseh2b	C	A	14: 62,591,075 (GRCm39)	T142K	probably damaging	Het
Sacs	T	C	14: 61,450,304 (GRCm39)	S4117P	probably damaging	Het
Sdk2	T	C	11: 113,745,195 (GRCm39)	N700S	probably damaging	Het
Sec62	A	C	3: 30,864,020 (GRCm39)	K101Q	unknown	Het
Sel1l2	A	C	2: 140,071,943 (GRCm39)	L659R	possibly damaging	Het
Septin11	A	G	5: 93,304,815 (GRCm39)	I211V	possibly damaging	Het
Slc25a42	C	T	8: 70,642,107 (GRCm39)	E112K	probably damaging	Het
Spem2	T	C	11: 69,708,609 (GRCm39)	N119D	probably benign	Het
Tie1	T	C	4: 118,343,414 (GRCm39)	K150E	probably damaging	Het
Top6bl	A	G	19: 4,675,901 (GRCm39)		probably benign	Het
Ubap2	G	A	4: 41,218,333 (GRCm39)	T258I	possibly damaging	Het
Ushbp1	C	T	8: 71,838,313 (GRCm39)	A664T	probably damaging	Het
Vmn1r1	T	C	1: 181,984,774 (GRCm39)	N297S	possibly damaging	Het
Vmn1r173	A	C	7: 23,402,637 (GRCm39)	I291L	probably damaging	Het
Yy1	A	G	12: 108,759,972 (GRCm39)	I212V	possibly damaging	Het
Zfp442	A	T	2: 150,250,149 (GRCm39)	F527L	probably damaging	Het
Zyg11b	T	A	4: 108,099,069 (GRCm39)	H632L	probably damaging	Het

Other mutations in Themis

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01609:Themis	APN	10	28,544,749 (GRCm39)	splice site	probably benign
IGL01729:Themis	APN	10	28,637,587 (GRCm39)	nonsense	probably null
IGL01833:Themis	APN	10	28,658,307 (GRCm39)	nonsense	probably null
IGL02582:Themis	APN	10	28,637,543 (GRCm39)	missense	probably benign	0.00
IGL02835:Themis	APN	10	28,637,616 (GRCm39)	intron	probably benign
cloudies	UTSW	10	28,637,195 (GRCm39)	nonsense	probably null
currant	UTSW	10	28,658,007 (GRCm39)	missense	probably damaging	1.00
death_valley	UTSW	10	28,544,723 (GRCm39)	missense	probably damaging	1.00
Meteor	UTSW	10	28,657,828 (GRCm39)	missense	possibly damaging	0.90
six_flags	UTSW	10	28,657,903 (GRCm39)	missense	probably damaging	1.00
R0445:Themis	UTSW	10	28,658,007 (GRCm39)	missense	probably damaging	1.00
R0507:Themis	UTSW	10	28,657,828 (GRCm39)	missense	possibly damaging	0.90
R0709:Themis	UTSW	10	28,637,570 (GRCm39)	missense	probably benign	0.00
R1170:Themis	UTSW	10	28,544,744 (GRCm39)	missense	possibly damaging	0.80
R1442:Themis	UTSW	10	28,658,131 (GRCm39)	missense	probably damaging	0.96
R1844:Themis	UTSW	10	28,657,753 (GRCm39)	missense	probably damaging	1.00
R2004:Themis	UTSW	10	28,658,720 (GRCm39)	missense	probably benign	0.28
R2150:Themis	UTSW	10	28,544,723 (GRCm39)	missense	probably damaging	1.00
R2358:Themis	UTSW	10	28,739,376 (GRCm39)	missense	possibly damaging	0.57
R4529:Themis	UTSW	10	28,658,331 (GRCm39)	missense	possibly damaging	0.92
R4693:Themis	UTSW	10	28,658,647 (GRCm39)	missense	probably damaging	1.00
R4801:Themis	UTSW	10	28,637,507 (GRCm39)	missense	probably benign	0.21
R4802:Themis	UTSW	10	28,637,507 (GRCm39)	missense	probably benign	0.21
R5249:Themis	UTSW	10	28,637,195 (GRCm39)	nonsense	probably null
R5557:Themis	UTSW	10	28,657,882 (GRCm39)	missense	possibly damaging	0.90
R5569:Themis	UTSW	10	28,657,887 (GRCm39)	missense	possibly damaging	0.95
R5640:Themis	UTSW	10	28,739,372 (GRCm39)	missense	probably damaging	0.99
R5735:Themis	UTSW	10	28,598,530 (GRCm39)	missense	probably benign	0.09
R6467:Themis	UTSW	10	28,657,762 (GRCm39)	missense	possibly damaging	0.47
R6523:Themis	UTSW	10	28,657,894 (GRCm39)	missense	possibly damaging	0.65
R6727:Themis	UTSW	10	28,657,903 (GRCm39)	missense	probably damaging	1.00
R7014:Themis	UTSW	10	28,665,703 (GRCm39)	missense	probably benign
R7101:Themis	UTSW	10	28,637,422 (GRCm39)	nonsense	probably null
R7185:Themis	UTSW	10	28,657,873 (GRCm39)	missense	probably benign	0.00
R7323:Themis	UTSW	10	28,609,497 (GRCm39)	missense	probably benign
R7386:Themis	UTSW	10	28,665,743 (GRCm39)	missense	probably benign	0.00
R7472:Themis	UTSW	10	28,637,415 (GRCm39)	missense	possibly damaging	0.69
R7555:Themis	UTSW	10	28,657,698 (GRCm39)	missense	possibly damaging	0.67
R7715:Themis	UTSW	10	28,739,305 (GRCm39)	missense	probably benign	0.02
R7825:Themis	UTSW	10	28,658,470 (GRCm39)	missense	probably benign	0.11
R7992:Themis	UTSW	10	28,637,342 (GRCm39)	missense	probably benign	0.02
R8112:Themis	UTSW	10	28,673,502 (GRCm39)	makesense	probably null
R8850:Themis	UTSW	10	28,673,492 (GRCm39)	missense	possibly damaging	0.83
R8954:Themis	UTSW	10	28,665,709 (GRCm39)	missense	probably benign	0.00
R9038:Themis	UTSW	10	28,657,749 (GRCm39)	missense	probably damaging	0.99
R9081:Themis	UTSW	10	28,544,582 (GRCm39)	unclassified	probably benign
R9168:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9169:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9170:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9171:Themis	UTSW	10	28,658,233 (GRCm39)	missense	probably benign	0.01
R9269:Themis	UTSW	10	28,739,390 (GRCm39)	missense	probably benign	0.10
R9404:Themis	UTSW	10	28,665,743 (GRCm39)	missense	probably benign	0.00
R9518:Themis	UTSW	10	28,544,748 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GCCACCGGTCAGTTAAGAAC -3'
(R):5'- CGGCCACTTTATAACATTGTTTCTG -3'

Sequencing Primer
(F):5'- ACCGGTCAGTTAAGAACACTATG -3'
(R):5'- AAACTCCAGTTGCATGGAATG -3'

Posted On

2015-10-21