Mutagenetix > Incidental Mutation

Incidental Mutation 'R4723:Gkn3'

354597

Institutional Source

Beutler Lab

Gene Symbol

Gkn3

Ensembl Gene

ENSMUSG00000030048

Gene Name

gastrokine 3

Synonyms

1190003M12Rik

MMRRC Submission

041959-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.054) question?

Stock #

R4723 (G1)

Quality Score

197

Status

Validated

Chromosome

Chromosomal Location

87360301-87365917 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 87360507 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 163 (A163T)

Ref Sequence

ENSEMBL: ENSMUSP00000032127 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032127] [ENSMUST00000032128]

AlphaFold

Q9D0T7

Predicted Effect

probably damaging
Transcript: ENSMUST00000032127
AA Change: A163T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000032127
Gene: ENSMUSG00000030048
AA Change: A163T

Domain	Start	End	E-Value	Type
transmembrane domain	13	32	N/A	INTRINSIC
BRICHOS	63	155	1.47e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000032128

SMART Domains

Protein: ENSMUSP00000032128
Gene: ENSMUSG00000030049

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
BRICHOS	54	151	6.63e-34	SMART

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.3%

Validation Efficiency

94% (77/82)

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrv1	T	C	13: 81,581,644 (GRCm39)	D4800G	probably benign	Het
Akna	T	C	4: 63,305,269 (GRCm39)	D499G	probably benign	Het
Arid1b	A	C	17: 5,387,565 (GRCm39)	I1673L	probably benign	Het
Bcr	T	A	10: 75,011,161 (GRCm39)	M24K	probably benign	Het
Bsn	A	G	9: 107,989,854 (GRCm39)	V1966A	probably benign	Het
Ccdc39	T	C	3: 33,867,227 (GRCm39)	N928S	possibly damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,619,782 (GRCm39)		probably benign	Het
Cdc6	G	A	11: 98,799,657 (GRCm39)		probably null	Het
Cfap97d2	A	T	8: 13,785,937 (GRCm39)	N69I	probably damaging	Het
Cmtm1	C	T	8: 105,020,307 (GRCm39)	A371T	probably damaging	Het
Cmtm7	A	C	9: 114,592,459 (GRCm39)	V46G	possibly damaging	Het
Cmtr1	A	G	17: 29,906,131 (GRCm39)		probably null	Het
Col5a3	T	C	9: 20,720,887 (GRCm39)	H149R	unknown	Het
Coro7	T	G	16: 4,449,858 (GRCm39)	Q634P	probably benign	Het
Crym	A	G	7: 119,800,298 (GRCm39)		probably null	Het
Csmd3	A	T	15: 47,532,556 (GRCm39)	F2546L	probably benign	Het
Dmap1	T	C	4: 117,533,236 (GRCm39)	T273A	probably benign	Het
Dnah1	T	C	14: 30,994,899 (GRCm39)	Y2786C	probably damaging	Het
Echs1	A	C	7: 139,690,561 (GRCm39)		probably benign	Het
Edem3	T	A	1: 151,680,449 (GRCm39)	F525I	possibly damaging	Het
Exosc3	T	C	4: 45,319,642 (GRCm39)	I127V	probably benign	Het
Fam193a	A	G	5: 34,578,130 (GRCm39)	D208G	probably benign	Het
Farp2	T	C	1: 93,508,621 (GRCm39)	V773A	probably benign	Het
Gas6	A	G	8: 13,516,848 (GRCm39)	V550A	probably damaging	Het
Gm2423	A	G	13: 13,406,961 (GRCm39)		noncoding transcript	Het
Grin1	T	C	2: 25,184,482 (GRCm39)	S911G	probably benign	Het
Hkdc1	T	C	10: 62,236,133 (GRCm39)	I470V	probably benign	Het
Hsdl2	T	A	4: 59,593,270 (GRCm39)		probably benign	Het
Iars2	A	G	1: 185,048,176 (GRCm39)	Y519H	probably damaging	Het
Ikbkb	A	T	8: 23,159,623 (GRCm39)	M455K	probably benign	Het
Keap1	G	T	9: 21,142,706 (GRCm39)	H516Q	probably benign	Het
Klk1b27	A	T	7: 43,705,956 (GRCm39)	I220F	probably damaging	Het
Knop1	G	A	7: 118,455,087 (GRCm39)		probably benign	Het
Lhcgr	T	C	17: 89,050,030 (GRCm39)	T499A	probably benign	Het
Lrch3	A	T	16: 32,808,854 (GRCm39)		probably null	Het
Lrrc2	G	A	9: 110,799,228 (GRCm39)		probably null	Het
Lrrk2	T	C	15: 91,648,962 (GRCm39)	L1652P	probably damaging	Het
Mbl1	T	C	14: 40,876,515 (GRCm39)	V71A	possibly damaging	Het
Med8	T	A	4: 118,268,998 (GRCm39)	M1K	probably null	Het
Mfsd2b	A	G	12: 4,918,992 (GRCm39)	L88P	probably benign	Het
Mkrn2	T	A	6: 115,588,811 (GRCm39)	C185S	probably damaging	Het
Myo1d	A	G	11: 80,670,667 (GRCm39)		probably benign	Het
Napg	T	G	18: 63,125,563 (GRCm39)		probably null	Het
Ncor1	A	G	11: 62,269,438 (GRCm39)	M253T	probably benign	Het
Oas3	T	C	5: 120,904,321 (GRCm39)	T518A	unknown	Het
Obox3-ps8	A	G	17: 36,764,036 (GRCm39)		noncoding transcript	Het
Opn5	A	T	17: 42,918,091 (GRCm39)	M57K	probably damaging	Het
Or10a3n	A	T	7: 108,493,028 (GRCm39)	F195L	probably benign	Het
Or13j1	T	C	4: 43,705,785 (GRCm39)	K261R	probably damaging	Het
Or52p1	T	C	7: 104,267,696 (GRCm39)	V270A	possibly damaging	Het
Pde2a	C	G	7: 101,143,825 (GRCm39)	P148R	possibly damaging	Het
Prss56	C	T	1: 87,113,059 (GRCm39)	L158F	possibly damaging	Het
Psmg3	G	A	5: 139,812,125 (GRCm39)		probably benign	Het
Rnase9	C	T	14: 51,276,901 (GRCm39)	G26R	probably damaging	Het
Skint4	T	C	4: 111,975,433 (GRCm39)	V131A	possibly damaging	Het
Slc10a4	T	A	5: 73,169,398 (GRCm39)	V341E	probably damaging	Het
Slc16a14	T	C	1: 84,890,741 (GRCm39)	Y188C	probably damaging	Het
Slc7a1	G	T	5: 148,272,250 (GRCm39)	P476T	probably damaging	Het
Smchd1	A	T	17: 71,743,742 (GRCm39)	C474*	probably null	Het
Smurf1	A	T	5: 144,829,994 (GRCm39)	D336E	probably damaging	Het
Sox30	G	A	11: 45,875,592 (GRCm39)	S448N	probably benign	Het
Spag11a	G	A	8: 19,209,398 (GRCm39)	V63I	possibly damaging	Het
Sprr1b	T	G	3: 92,344,600 (GRCm39)	K92T	probably damaging	Het
Stam2	T	C	2: 52,610,962 (GRCm39)	Y20C	probably benign	Het
Sult2b1	T	A	7: 45,391,489 (GRCm39)	Y97F	probably damaging	Het
Tecpr2	C	T	12: 110,899,410 (GRCm39)	P593S	probably benign	Het
Tek	T	C	4: 94,687,397 (GRCm39)	V170A	possibly damaging	Het
Tiam2	A	G	17: 3,500,592 (GRCm39)	Y891C	probably benign	Het
Tmem220	A	G	11: 66,920,819 (GRCm39)	T75A	possibly damaging	Het
Traf3	T	G	12: 111,228,470 (GRCm39)	D560E	probably damaging	Het
Txlnb	A	G	10: 17,675,015 (GRCm39)	H56R	probably benign	Het
Vmn2r98	A	T	17: 19,286,602 (GRCm39)	N367Y	probably benign	Het
Vnn3	A	G	10: 23,727,589 (GRCm39)	I36M	possibly damaging	Het
Zbtb7a	G	A	10: 80,980,274 (GRCm39)	R156H	probably damaging	Het

Other mutations in Gkn3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02170:Gkn3	APN	6	87,360,493 (GRCm39)	missense	possibly damaging	0.70
IGL02746:Gkn3	APN	6	87,364,339 (GRCm39)	splice site	probably benign
IGL03345:Gkn3	APN	6	87,365,798 (GRCm39)	missense	probably null	0.09
R1758:Gkn3	UTSW	6	87,365,817 (GRCm39)	start codon destroyed	probably benign
R2303:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2304:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2363:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2365:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2897:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2898:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R2983:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R3031:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R3426:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R3433:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4085:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4086:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4087:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4088:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4089:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4090:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4163:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4164:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4720:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4721:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4722:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4766:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R4941:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R5004:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R5163:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R6078:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R6079:Gkn3	UTSW	6	87,360,507 (GRCm39)	missense	probably damaging	1.00
R6502:Gkn3	UTSW	6	87,365,786 (GRCm39)	missense	probably benign	0.01
R6924:Gkn3	UTSW	6	87,365,784 (GRCm39)	missense	probably benign	0.05
R7695:Gkn3	UTSW	6	87,361,422 (GRCm39)	missense	probably damaging	1.00
R9240:Gkn3	UTSW	6	87,365,789 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TCCATGGGAAGCCAACATGTG -3'
(R):5'- TTCAAGACACAAGGGTCCCG -3'

Sequencing Primer
(F):5'- TGTGGAGCACAGAGGACTGC -3'
(R):5'- CACACTGGGCTAAGGGGTTAC -3'

Posted On

2015-10-21