Mutagenetix > Incidental Mutation

Incidental Mutation 'R0206:Rlig1'

35474

Institutional Source

Beutler Lab

Gene Symbol

Rlig1

Ensembl Gene

ENSMUSG00000046567

Gene Name

RNA 5'-phosphate and 3'-OH ligase 1

Synonyms

4930430F08Rik

MMRRC Submission

038459-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.167) question?

Stock #

R0206 (G1)

Quality Score

137

Status

Validated

Chromosome

Chromosomal Location

100408136-100425252 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 100422056 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 69 (K69*)

Ref Sequence

ENSEMBL: ENSMUSP00000152035 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054471] [ENSMUST00000188930] [ENSMUST00000218464] [ENSMUST00000218821]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000054471
AA Change: K69*

Predicted Effect

probably benign
Transcript: ENSMUST00000188930

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218156

Predicted Effect

probably null
Transcript: ENSMUST00000218328
AA Change: K40*

Predicted Effect

probably benign
Transcript: ENSMUST00000218464

Predicted Effect

probably null
Transcript: ENSMUST00000218821
AA Change: K69*

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218929

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219410

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219790

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219995

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219698

Meta Mutation Damage Score

0.9756

Coding Region Coverage

1x: 98.2%
3x: 97.1%
10x: 94.6%
20x: 89.0%

Validation Efficiency

99% (83/84)

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A530064D06Rik	G	A	17: 48,470,486 (GRCm39)	T165I	probably benign	Het
Aadacl2fm1	C	T	3: 59,840,110 (GRCm39)	R61C	probably damaging	Het
Acsl5	A	G	19: 55,269,001 (GRCm39)	K221E	probably benign	Het
Adam26a	A	C	8: 44,023,455 (GRCm39)	F12V	possibly damaging	Het
Adgrb2	T	C	4: 129,886,352 (GRCm39)	L164P	probably damaging	Het
Aldh1l1	T	C	6: 90,546,848 (GRCm39)	F384L	possibly damaging	Het
Arhgef5	A	G	6: 43,250,275 (GRCm39)	E342G	probably damaging	Het
Btbd8	A	G	5: 107,652,906 (GRCm39)	T304A	probably benign	Het
Cacna1b	A	G	2: 24,497,492 (GRCm39)	S2140P	probably damaging	Het
Camsap2	G	C	1: 136,208,738 (GRCm39)	P918R	probably damaging	Het
Cdca3	C	T	6: 124,809,514 (GRCm39)		probably benign	Het
Cenpj	G	T	14: 56,801,427 (GRCm39)	A182E	probably benign	Het
Cit	A	T	5: 116,132,089 (GRCm39)	N1782Y	possibly damaging	Het
Cmya5	A	G	13: 93,232,065 (GRCm39)	S1008P	probably damaging	Het
Csgalnact2	T	G	6: 118,091,347 (GRCm39)	Q197P	probably benign	Het
D630045J12Rik	A	G	6: 38,116,385 (GRCm39)	M1745T	probably damaging	Het
Ddt	A	G	10: 75,608,719 (GRCm39)	M1T	probably null	Het
Dnah11	A	C	12: 118,007,509 (GRCm39)	N2156K	probably damaging	Het
Dock3	G	T	9: 106,874,195 (GRCm39)	Y425*	probably null	Het
Eng	A	T	2: 32,569,005 (GRCm39)	T511S	probably benign	Het
Gabra6	C	T	11: 42,207,906 (GRCm39)	W188*	probably null	Het
Gnptab	A	T	10: 88,275,372 (GRCm39)	H1111L	probably damaging	Het
H2-M10.4	A	G	17: 36,771,375 (GRCm39)	W268R	probably damaging	Het
Hrct1	C	A	4: 43,727,384 (GRCm39)	T8K	possibly damaging	Het
Il2ra	T	C	2: 11,686,828 (GRCm39)		probably benign	Het
Inhca	A	G	9: 103,159,861 (GRCm39)	C5R	probably damaging	Het
Inpp5k	T	C	11: 75,521,969 (GRCm39)	I15T	probably benign	Het
Ipcef1	A	G	10: 6,870,062 (GRCm39)	S113P	probably damaging	Het
Kctd8	A	T	5: 69,498,508 (GRCm39)	V46E	probably damaging	Het
Klk1b9	T	A	7: 43,628,854 (GRCm39)	N119K	possibly damaging	Het
Krtap9-3	C	A	11: 99,488,663 (GRCm39)	C73F	probably damaging	Het
Loxhd1	T	A	18: 77,492,562 (GRCm39)	F1334L	possibly damaging	Het
Me3	A	T	7: 89,498,868 (GRCm39)	T483S	probably benign	Het
Med1	A	G	11: 98,046,515 (GRCm39)		probably benign	Het
Med13	A	G	11: 86,191,682 (GRCm39)		probably benign	Het
Mvk	C	T	5: 114,597,035 (GRCm39)	T334M	probably damaging	Het
Mxra8	T	A	4: 155,927,053 (GRCm39)	I329N	probably damaging	Het
Mybphl	T	C	3: 108,282,731 (GRCm39)	V207A	probably damaging	Het
Myom1	T	C	17: 71,344,292 (GRCm39)	S266P	probably damaging	Het
Nr2f2	G	C	7: 70,009,923 (GRCm39)	P52R	probably damaging	Het
Or1d2	A	T	11: 74,255,968 (GRCm39)	I158F	probably benign	Het
Or2ag12	A	G	7: 106,276,781 (GRCm39)	V304A	probably benign	Het
Or52b1	A	T	7: 104,979,090 (GRCm39)	M103K	possibly damaging	Het
Or5b105	G	A	19: 13,080,642 (GRCm39)	R3C	possibly damaging	Het
Or5m3	T	C	2: 85,838,636 (GRCm39)	I172T	probably damaging	Het
Or6f1	T	C	7: 85,970,854 (GRCm39)	Y102C	probably benign	Het
Pcdhb18	T	C	18: 37,623,240 (GRCm39)	I190T	possibly damaging	Het
Pgbd1	A	C	13: 21,618,651 (GRCm39)	L2R	probably damaging	Het
Pkp4	A	G	2: 59,096,780 (GRCm39)	I61V	probably damaging	Het
Pold4	T	G	19: 4,282,593 (GRCm39)	Y58*	probably null	Het
Pomgnt1	T	C	4: 116,015,757 (GRCm39)		probably null	Het
Prex2	T	A	1: 11,355,368 (GRCm39)	D1556E	probably damaging	Het
Psmd1	T	C	1: 86,061,463 (GRCm39)	V891A	possibly damaging	Het
Psme3ip1	A	G	8: 95,314,639 (GRCm39)	F73S	probably damaging	Het
Rmdn2	T	A	17: 79,957,716 (GRCm39)		probably benign	Het
Ryr2	A	G	13: 11,691,137 (GRCm39)		probably benign	Het
Scgb2b27	C	A	7: 33,711,562 (GRCm39)	E96*	probably null	Het
Sec16b	G	T	1: 157,380,505 (GRCm39)	G359*	probably null	Het
Slc1a3	A	G	15: 8,738,040 (GRCm39)		probably benign	Het
Slc28a1	A	T	7: 80,767,454 (GRCm39)		probably benign	Het
Slc35d1	T	C	4: 103,065,351 (GRCm39)	T177A	probably damaging	Het
Snx33	G	A	9: 56,833,508 (GRCm39)	S187L	probably damaging	Het
Spg11	C	T	2: 121,886,177 (GRCm39)		probably null	Het
Spint1	T	C	2: 119,078,826 (GRCm39)		probably benign	Het
Spta1	A	G	1: 174,020,526 (GRCm39)	H545R	probably damaging	Het
Tinag	A	G	9: 76,907,134 (GRCm39)	I367T	probably damaging	Het
Tln1	C	T	4: 43,549,151 (GRCm39)	V644M	probably damaging	Het
Tnfrsf21	C	T	17: 43,349,104 (GRCm39)	H239Y	probably benign	Het
Ube4b	T	C	4: 149,483,094 (GRCm39)	H58R	probably benign	Het
Ush2a	A	C	1: 188,263,958 (GRCm39)	I1612L	probably damaging	Het
Usp28	A	G	9: 48,939,569 (GRCm39)	Y275C	probably damaging	Het
Vmn2r6	T	C	3: 64,447,333 (GRCm39)	T578A	probably benign	Het
Vps13c	A	G	9: 67,846,444 (GRCm39)		probably benign	Het
Vwf	T	C	6: 125,614,419 (GRCm39)	F1100S	probably damaging	Het
Zfp318	G	T	17: 46,709,945 (GRCm39)	R556L	probably benign	Het
Zkscan1	T	A	5: 138,099,448 (GRCm39)	C391S	probably damaging	Het

Other mutations in Rlig1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01314:Rlig1	APN	10	100,409,473 (GRCm39)	missense	probably damaging	0.97
IGL01775:Rlig1	APN	10	100,419,799 (GRCm39)	missense	probably benign	0.41
PIT4495001:Rlig1	UTSW	10	100,419,812 (GRCm39)	missense	probably damaging	1.00
R0731:Rlig1	UTSW	10	100,422,065 (GRCm39)	missense	probably damaging	1.00
R1955:Rlig1	UTSW	10	100,413,166 (GRCm39)	missense	probably damaging	1.00
R2011:Rlig1	UTSW	10	100,419,820 (GRCm39)	missense	probably damaging	0.99
R4680:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4682:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4683:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4708:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4709:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4742:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R4743:Rlig1	UTSW	10	100,414,243 (GRCm39)	missense	probably benign	0.07
R6716:Rlig1	UTSW	10	100,409,478 (GRCm39)	missense	probably benign	0.00
R7185:Rlig1	UTSW	10	100,425,073 (GRCm39)	start gained	probably benign
R8103:Rlig1	UTSW	10	100,413,110 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGAAAGCACTGGACACTGCACTG -3'
(R):5'- GCAGAGGCTGTGTATCTTACACCC -3'

Sequencing Primer
(F):5'- ctgaaccccgctgagac -3'
(R):5'- GCTGTGTATCTTACACCCGTTTTTC -3'

Posted On

2013-05-09