Incidental Mutation 'R4692:Arl2'
ID 355003
Institutional Source Beutler Lab
Gene Symbol Arl2
Ensembl Gene ENSMUSG00000024944
Gene Name ADP-ribosylation factor-like 2
Synonyms arf-like protein 2, 2610009M23Rik
MMRRC Submission 041943-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.959) question?
Stock # R4692 (G1)
Quality Score 225
Status Not validated
Chromosome 19
Chromosomal Location 6184419-6191167 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 6187776 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 54 (T54A)
Ref Sequence ENSEMBL: ENSMUSP00000025893 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000025893]
AlphaFold Q9D0J4
PDB Structure Complex of Arl2 and PDE delta, Crystal Form 1 [X-RAY DIFFRACTION]
Complex of Arl2 and PDE delta, Crystal Form 2 (native) [X-RAY DIFFRACTION]
Complex of Arl2 and PDE delta, Crystal Form 2 (SeMet) [X-RAY DIFFRACTION]
Predicted Effect probably damaging
Transcript: ENSMUST00000025893
AA Change: T54A

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000025893
Gene: ENSMUSG00000024944
AA Change: T54A

DomainStartEndE-ValueType
ARF 1 180 8.03e-60 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123193
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134150
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134821
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.0%
  • 20x: 94.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a small GTP-binding protein of the RAS superfamily which functions as an ADP-ribosylation factor (ARF). The encoded protein is one of a functionally distinct group of ARF-like genes. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 43 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310057J18Rik A T 10: 28,849,882 (GRCm39) Y230* probably null Het
9230104M06Rik A T 12: 112,963,692 (GRCm39) probably benign Het
Arhgap20 A G 9: 51,697,088 (GRCm39) D53G probably damaging Het
Baz2a G A 10: 127,960,762 (GRCm39) G1521S probably damaging Het
Begain A G 12: 108,999,818 (GRCm39) S523P probably damaging Het
Car10 T C 11: 93,075,984 (GRCm39) probably null Het
Cenpe A G 3: 134,922,140 (GRCm39) I66V probably benign Het
Col14a1 T A 15: 55,286,864 (GRCm39) V895E unknown Het
Coro1b T C 19: 4,199,418 (GRCm39) Y26H probably damaging Het
Crebbp T C 16: 3,932,727 (GRCm39) E1017G possibly damaging Het
Cwf19l2 T C 9: 3,428,709 (GRCm39) S232P probably damaging Het
Cyp7b1 T A 3: 18,126,728 (GRCm39) I473F probably damaging Het
Efcab5 A T 11: 77,004,507 (GRCm39) I937N probably damaging Het
Fam53c A C 18: 34,901,743 (GRCm39) E220A probably damaging Het
Gsn A G 2: 35,188,883 (GRCm39) Y434C probably damaging Het
Igkv2-137 T C 6: 67,532,971 (GRCm39) S45P possibly damaging Het
Katnip T C 7: 125,466,841 (GRCm39) probably null Het
Kif13b C A 14: 65,041,024 (GRCm39) T1704K probably benign Het
Mapk7 A G 11: 61,380,068 (GRCm39) S697P possibly damaging Het
Mrgpra1 T A 7: 46,985,446 (GRCm39) I78F probably damaging Het
N6amt1 T C 16: 87,153,854 (GRCm39) V97A possibly damaging Het
Oas3 T C 5: 120,907,420 (GRCm39) T406A probably benign Het
Or4f61 A G 2: 111,923,026 (GRCm39) S7P probably damaging Het
Or8c17 C T 9: 38,179,826 (GRCm39) Q6* probably null Het
Paxip1 T C 5: 27,977,095 (GRCm39) probably benign Het
Pfn4 A T 12: 4,824,486 (GRCm39) Y71F probably damaging Het
Plin4 C A 17: 56,410,762 (GRCm39) G1090C probably damaging Het
Ptk2b C T 14: 66,394,518 (GRCm39) G859S probably benign Het
Rbl2 T A 8: 91,849,047 (GRCm39) D1084E probably damaging Het
Robo1 T G 16: 72,757,090 (GRCm39) S350R probably damaging Het
Sbno2 A G 10: 79,922,161 (GRCm39) V4A possibly damaging Het
Sh3rf1 T C 8: 61,806,888 (GRCm39) probably null Het
Smgc T C 15: 91,738,764 (GRCm39) V474A possibly damaging Het
Snx13 A G 12: 35,136,917 (GRCm39) D126G possibly damaging Het
Sox9 C A 11: 112,673,803 (GRCm39) H131Q probably benign Het
Spag6 T C 2: 18,704,054 (GRCm39) I34T probably benign Het
Speer2 T A 16: 69,654,860 (GRCm39) T202S possibly damaging Het
Sspo T A 6: 48,459,621 (GRCm39) C3327S probably damaging Het
Vcpip1 G T 1: 9,818,299 (GRCm39) A28E unknown Het
Vstm5 A T 9: 15,168,718 (GRCm39) D94V probably damaging Het
Zfp329 T C 7: 12,544,559 (GRCm39) K322E probably damaging Het
Zfp932 G A 5: 110,157,052 (GRCm39) G250D probably damaging Het
Zscan26 A G 13: 21,629,427 (GRCm39) C359R probably damaging Het
Other mutations in Arl2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00482:Arl2 APN 19 6,191,082 (GRCm39) missense probably damaging 1.00
IGL00841:Arl2 APN 19 6,185,999 (GRCm39) splice site probably benign
IGL01883:Arl2 APN 19 6,187,521 (GRCm39) missense probably damaging 1.00
R0833:Arl2 UTSW 19 6,186,052 (GRCm39) missense probably damaging 1.00
R1300:Arl2 UTSW 19 6,191,103 (GRCm39) missense probably benign 0.00
R3952:Arl2 UTSW 19 6,184,707 (GRCm39) missense probably benign 0.03
R4669:Arl2 UTSW 19 6,184,716 (GRCm39) missense probably damaging 1.00
R5683:Arl2 UTSW 19 6,184,794 (GRCm39) missense probably benign
R6715:Arl2 UTSW 19 6,187,555 (GRCm39) missense probably damaging 1.00
R7027:Arl2 UTSW 19 6,191,119 (GRCm39) missense probably benign 0.00
R7100:Arl2 UTSW 19 6,184,774 (GRCm39) missense probably benign 0.01
R8212:Arl2 UTSW 19 6,187,596 (GRCm39) missense probably damaging 1.00
R8226:Arl2 UTSW 19 6,187,506 (GRCm39) critical splice donor site probably null
Predicted Primers PCR Primer
(F):5'- ATCCGTGCTCTCAAAGTAGTTC -3'
(R):5'- TCAGGCACGTGCTCAACTTG -3'

Sequencing Primer
(F):5'- GCTCTCAAAGTAGTTCCTCCAGTAG -3'
(R):5'- TACAGTAGGAAAGTACTAGTCCCTAG -3'
Posted On 2015-10-21