Incidental Mutation 'R4705:Pkdrej'
ID 355165
Institutional Source Beutler Lab
Gene Symbol Pkdrej
Ensembl Gene ENSMUSG00000052496
Gene Name polycystin (PKD) family receptor for egg jelly
Synonyms
MMRRC Submission 041953-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.083) question?
Stock # R4705 (G1)
Quality Score 225
Status Validated
Chromosome 15
Chromosomal Location 85814670-85821734 bp(-) (GRCm38)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 85821167 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Stop codon at position 189 (Y189*)
Ref Sequence ENSEMBL: ENSMUSP00000086352 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000064370]
AlphaFold no structure available at present
Predicted Effect probably null
Transcript: ENSMUST00000064370
AA Change: Y189*
SMART Domains Protein: ENSMUSP00000086352
Gene: ENSMUSG00000052496
AA Change: Y189*

DomainStartEndE-ValueType
signal peptide 1 17 N/A INTRINSIC
Pfam:REJ 130 598 6.2e-116 PFAM
coiled coil region 657 687 N/A INTRINSIC
low complexity region 942 947 N/A INTRINSIC
GPS 984 1050 1.37e-2 SMART
transmembrane domain 1067 1089 N/A INTRINSIC
LH2 1114 1230 3.35e-6 SMART
transmembrane domain 1274 1292 N/A INTRINSIC
transmembrane domain 1312 1334 N/A INTRINSIC
low complexity region 1407 1415 N/A INTRINSIC
transmembrane domain 1451 1473 N/A INTRINSIC
transmembrane domain 1483 1505 N/A INTRINSIC
low complexity region 1571 1579 N/A INTRINSIC
transmembrane domain 1581 1603 N/A INTRINSIC
Pfam:PKD_channel 1621 2051 5.2e-154 PFAM
Meta Mutation Damage Score 0.9705 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.2%
Validation Efficiency 96% (113/118)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This intronless gene encodes a member of the polycystin protein family. The encoded protein contains 11 transmembrane domains, a receptor for egg jelly (REJ) domain, a G-protein-coupled receptor proteolytic site (GPS) domain, and a polycystin-1, lipoxygenase, alpha-toxin (PLAT) domain. This protein may play a role in human reproduction. Alternative splice variants have been described but their biological natures have not been determined. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null males are fertile in unrestricted mating trials but show lower reproductive success in sequential mating and artificial insemination trials. Although mutant sperm are able to capacitate in vitro, they acquire exocytotic competence at a slower rate than wild-type sperm. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 102 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1190002N15Rik T C 9: 94,520,635 N325D possibly damaging Het
1700056E22Rik A G 1: 184,033,172 V230A possibly damaging Het
2010315B03Rik T C 9: 124,294,001 T123A possibly damaging Het
4932438A13Rik C T 3: 37,041,889 T1108I probably benign Het
Abca4 T C 3: 122,105,370 V667A probably damaging Het
Abcb5 A G 12: 118,965,305 S4P possibly damaging Het
Adam25 G T 8: 40,754,126 C143F probably damaging Het
Ahnak C A 19: 9,016,906 H5185N probably benign Het
Apobec4 A G 1: 152,756,250 T10A probably benign Het
Ascc1 A G 10: 60,049,802 Y225C probably damaging Het
Aspscr1 A T 11: 120,688,945 K39N possibly damaging Het
Atf7ip C T 6: 136,561,194 P483L probably damaging Het
Atp11a C G 8: 12,813,118 P99R probably damaging Het
B4galnt1 G T 10: 127,167,525 V172F possibly damaging Het
Bag6 C A 17: 35,142,343 P476H probably damaging Het
BC049730 T A 7: 24,713,509 L114Q probably damaging Het
C2cd3 A G 7: 100,395,188 K326E possibly damaging Het
Casp1 A G 9: 5,306,204 D363G probably damaging Het
Ccdc33 G T 9: 58,117,557 Q129K probably benign Het
Ccdc88a T C 11: 29,422,586 I107T probably benign Het
Cela2a T C 4: 141,821,411 N138S probably benign Het
Cfap61 A C 2: 146,035,202 R460S probably damaging Het
Clstn2 T C 9: 97,463,559 N579D possibly damaging Het
Col13a1 C A 10: 61,850,165 G683W unknown Het
Col4a2 G A 8: 11,313,504 R14Q possibly damaging Het
Cpa6 A G 1: 10,481,058 S164P probably benign Het
Cpq A G 15: 33,497,338 N408S probably benign Het
Ctnnal1 T C 4: 56,812,579 T690A probably benign Het
Cx3cl1 A T 8: 94,780,207 N280I probably benign Het
Cyp2b19 C T 7: 26,757,292 R36C probably benign Het
Ddx51 T C 5: 110,655,308 V269A probably damaging Het
Dlst G T 12: 85,118,842 probably null Het
Dmkn G C 7: 30,763,981 A20P probably damaging Het
Dnhd1 T C 7: 105,655,741 I330T probably damaging Het
Dock3 G A 9: 107,025,336 H292Y probably damaging Het
Ell A G 8: 70,578,934 D94G possibly damaging Het
Enam T A 5: 88,503,791 L1053* probably null Het
Fcgbp A G 7: 28,107,296 K2230E probably benign Het
Frmd5 G T 2: 121,562,863 probably benign Het
Gas2l1 G A 11: 5,060,867 S654L possibly damaging Het
Gltpd2 G T 11: 70,520,140 E86* probably null Het
Glyat T C 19: 12,651,297 L152P possibly damaging Het
Gm17330 T C 12: 23,968,782 T22A probably damaging Het
Gm9931 T A 1: 147,281,853 noncoding transcript Het
Gpatch1 A T 7: 35,299,305 probably null Het
Gpr4 T C 7: 19,222,894 L247P probably damaging Het
Gtpbp3 G A 8: 71,491,114 E214K probably benign Het
Hdac7 G T 15: 97,811,587 Q21K probably damaging Het
Hivep3 A G 4: 119,872,050 probably benign Het
Hk2 C T 6: 82,739,650 M300I possibly damaging Het
Ighv1-61 T C 12: 115,359,279 Y71C probably damaging Het
Il1f8 T C 2: 24,154,618 V10A probably benign Het
Inpp5f G T 7: 128,663,987 S152I probably damaging Het
Jag1 C A 2: 137,096,309 W257L probably damaging Het
Jak2 T A 19: 29,294,915 N612K possibly damaging Het
Kalrn T C 16: 34,203,957 D610G probably damaging Het
Kbtbd6 A G 14: 79,452,606 D247G probably benign Het
Kif15 A G 9: 122,959,993 probably null Het
Kndc1 A G 7: 139,930,123 T1293A possibly damaging Het
Lpar5 T C 6: 125,082,207 I297T possibly damaging Het
Lpin2 T A 17: 71,232,143 probably benign Het
Mfsd4a A T 1: 132,053,571 L230Q probably damaging Het
Mmp8 T C 9: 7,565,549 V313A probably benign Het
Mrpl19 A T 6: 81,964,285 D98E probably damaging Het
Mybl1 A G 1: 9,690,115 I86T probably damaging Het
Nadk C A 4: 155,585,227 P157T probably benign Het
Necab1 T C 4: 15,052,628 T117A probably damaging Het
Nol11 A G 11: 107,184,718 probably benign Het
Nucb2 G A 7: 116,540,027 probably null Het
Nupl1 G T 14: 60,251,215 P19T unknown Het
Odf2 T A 2: 29,904,034 L301Q probably damaging Het
Oit1 T C 14: 8,349,347 E201G probably benign Het
Olfr374 T A 8: 72,110,200 F211L probably damaging Het
Olfr736 A G 14: 50,392,800 I15V probably benign Het
Oog4 T C 4: 143,438,875 Y234C probably benign Het
Papln T C 12: 83,777,208 probably null Het
Paqr6 C T 3: 88,365,929 A76V probably benign Het
Pclo A G 5: 14,676,480 probably benign Het
Pdzd8 T C 19: 59,345,311 T93A possibly damaging Het
Pknox2 A T 9: 36,923,638 N178K possibly damaging Het
Pla2g15 T A 8: 106,163,059 M321K probably benign Het
Plxnd1 A C 6: 115,958,620 L1735R probably damaging Het
Polm T A 11: 5,837,663 D30V possibly damaging Het
Rap1gap2 T A 11: 74,437,439 I100F probably damaging Het
Rasgef1c T A 11: 49,978,467 W414R probably benign Het
Rassf1 A G 9: 107,557,867 D187G probably benign Het
Rhag T C 17: 40,836,438 I397T probably benign Het
Rnft2 A G 5: 118,228,863 F269S probably damaging Het
Rnmt T C 18: 68,314,125 F360S probably damaging Het
Ror2 C T 13: 53,117,297 A329T probably benign Het
Slc4a1 T A 11: 102,356,258 N501I possibly damaging Het
Slc4a7 T A 14: 14,733,856 S89T probably damaging Het
Sptbn1 G A 11: 30,100,660 H2310Y probably benign Het
Tbc1d9b C A 11: 50,140,462 N103K probably benign Het
Tbxas1 T C 6: 39,083,857 probably null Het
Tmem100 C T 11: 90,035,563 T72I probably damaging Het
Ttc38 A G 15: 85,852,963 T350A probably benign Het
Ubr4 C T 4: 139,450,529 T3241M probably damaging Het
Unc13d A T 11: 116,073,388 M350K possibly damaging Het
Vit T C 17: 78,625,114 I550T probably damaging Het
Vmn1r31 C A 6: 58,471,968 *304L probably null Het
Zbtb12 T A 17: 34,896,401 H387Q possibly damaging Het
Other mutations in Pkdrej
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00921:Pkdrej APN 15 85,817,226 (GRCm38) missense probably damaging 1.00
IGL00981:Pkdrej APN 15 85,819,656 (GRCm38) missense probably damaging 1.00
IGL01066:Pkdrej APN 15 85,816,159 (GRCm38) missense probably benign 0.22
IGL01461:Pkdrej APN 15 85,820,374 (GRCm38) missense possibly damaging 0.77
IGL01514:Pkdrej APN 15 85,818,063 (GRCm38) missense possibly damaging 0.82
IGL01606:Pkdrej APN 15 85,817,700 (GRCm38) missense possibly damaging 0.67
IGL01836:Pkdrej APN 15 85,820,958 (GRCm38) missense probably damaging 1.00
IGL02089:Pkdrej APN 15 85,816,288 (GRCm38) missense possibly damaging 0.87
IGL02197:Pkdrej APN 15 85,815,793 (GRCm38) missense possibly damaging 0.89
IGL02331:Pkdrej APN 15 85,821,327 (GRCm38) missense probably damaging 1.00
IGL02559:Pkdrej APN 15 85,817,848 (GRCm38) missense probably benign
IGL02708:Pkdrej APN 15 85,820,787 (GRCm38) missense probably damaging 1.00
IGL02739:Pkdrej APN 15 85,819,694 (GRCm38) missense probably benign 0.41
IGL02741:Pkdrej APN 15 85,817,430 (GRCm38) missense probably benign 0.04
IGL02882:Pkdrej APN 15 85,817,296 (GRCm38) missense probably damaging 1.00
IGL02968:Pkdrej APN 15 85,816,181 (GRCm38) nonsense probably null
IGL03250:Pkdrej APN 15 85,821,355 (GRCm38) missense possibly damaging 0.92
FR4548:Pkdrej UTSW 15 85,819,680 (GRCm38) small insertion probably benign
FR4737:Pkdrej UTSW 15 85,819,680 (GRCm38) small insertion probably benign
PIT1430001:Pkdrej UTSW 15 85,821,292 (GRCm38) missense probably damaging 0.99
PIT4280001:Pkdrej UTSW 15 85,819,935 (GRCm38) missense probably benign 0.01
R0004:Pkdrej UTSW 15 85,818,183 (GRCm38) missense probably damaging 1.00
R0116:Pkdrej UTSW 15 85,817,545 (GRCm38) nonsense probably null
R0117:Pkdrej UTSW 15 85,816,099 (GRCm38) splice site probably null
R0137:Pkdrej UTSW 15 85,821,567 (GRCm38) missense possibly damaging 0.95
R0141:Pkdrej UTSW 15 85,815,630 (GRCm38) missense probably damaging 0.99
R0325:Pkdrej UTSW 15 85,819,551 (GRCm38) missense probably benign 0.08
R0714:Pkdrej UTSW 15 85,815,511 (GRCm38) missense possibly damaging 0.85
R0749:Pkdrej UTSW 15 85,818,074 (GRCm38) missense probably benign 0.43
R0750:Pkdrej UTSW 15 85,818,074 (GRCm38) missense probably benign 0.43
R0755:Pkdrej UTSW 15 85,816,135 (GRCm38) missense probably benign 0.00
R0938:Pkdrej UTSW 15 85,818,163 (GRCm38) missense probably damaging 1.00
R1126:Pkdrej UTSW 15 85,816,314 (GRCm38) missense probably damaging 0.99
R1204:Pkdrej UTSW 15 85,818,312 (GRCm38) missense probably damaging 1.00
R1353:Pkdrej UTSW 15 85,818,918 (GRCm38) missense probably damaging 1.00
R1471:Pkdrej UTSW 15 85,817,133 (GRCm38) missense probably benign 0.37
R1510:Pkdrej UTSW 15 85,816,762 (GRCm38) missense possibly damaging 0.61
R1573:Pkdrej UTSW 15 85,818,074 (GRCm38) missense probably benign 0.43
R1588:Pkdrej UTSW 15 85,817,241 (GRCm38) missense probably benign 0.44
R1739:Pkdrej UTSW 15 85,820,427 (GRCm38) missense probably benign 0.03
R1779:Pkdrej UTSW 15 85,821,171 (GRCm38) missense possibly damaging 0.83
R1781:Pkdrej UTSW 15 85,821,171 (GRCm38) missense possibly damaging 0.83
R1828:Pkdrej UTSW 15 85,819,282 (GRCm38) missense possibly damaging 0.48
R1865:Pkdrej UTSW 15 85,820,324 (GRCm38) nonsense probably null
R1870:Pkdrej UTSW 15 85,816,431 (GRCm38) missense probably damaging 1.00
R1937:Pkdrej UTSW 15 85,819,167 (GRCm38) missense probably benign 0.00
R2069:Pkdrej UTSW 15 85,821,231 (GRCm38) missense probably benign 0.01
R2113:Pkdrej UTSW 15 85,818,984 (GRCm38) missense probably damaging 1.00
R2135:Pkdrej UTSW 15 85,816,506 (GRCm38) missense probably damaging 1.00
R2428:Pkdrej UTSW 15 85,817,572 (GRCm38) nonsense probably null
R2991:Pkdrej UTSW 15 85,819,936 (GRCm38) missense probably benign 0.00
R3029:Pkdrej UTSW 15 85,817,004 (GRCm38) missense probably benign 0.16
R3162:Pkdrej UTSW 15 85,816,617 (GRCm38) missense probably damaging 1.00
R3162:Pkdrej UTSW 15 85,816,617 (GRCm38) missense probably damaging 1.00
R3747:Pkdrej UTSW 15 85,821,077 (GRCm38) missense probably damaging 0.96
R3748:Pkdrej UTSW 15 85,821,077 (GRCm38) missense probably damaging 0.96
R3749:Pkdrej UTSW 15 85,821,077 (GRCm38) missense probably damaging 0.96
R4028:Pkdrej UTSW 15 85,817,492 (GRCm38) missense probably benign 0.02
R4169:Pkdrej UTSW 15 85,816,314 (GRCm38) missense probably benign 0.24
R4241:Pkdrej UTSW 15 85,818,144 (GRCm38) missense probably damaging 1.00
R4242:Pkdrej UTSW 15 85,818,144 (GRCm38) missense probably damaging 1.00
R4939:Pkdrej UTSW 15 85,820,283 (GRCm38) missense possibly damaging 0.82
R4954:Pkdrej UTSW 15 85,816,401 (GRCm38) missense probably damaging 0.99
R4974:Pkdrej UTSW 15 85,820,409 (GRCm38) missense probably benign 0.00
R4982:Pkdrej UTSW 15 85,818,996 (GRCm38) missense probably damaging 0.99
R5105:Pkdrej UTSW 15 85,816,384 (GRCm38) missense probably damaging 1.00
R5270:Pkdrej UTSW 15 85,818,327 (GRCm38) missense probably damaging 1.00
R5296:Pkdrej UTSW 15 85,817,118 (GRCm38) missense possibly damaging 0.67
R5631:Pkdrej UTSW 15 85,820,437 (GRCm38) missense probably benign
R5909:Pkdrej UTSW 15 85,818,296 (GRCm38) missense possibly damaging 0.82
R5998:Pkdrej UTSW 15 85,815,453 (GRCm38) missense probably benign 0.01
R6037:Pkdrej UTSW 15 85,819,766 (GRCm38) missense probably damaging 0.99
R6037:Pkdrej UTSW 15 85,819,766 (GRCm38) missense probably damaging 0.99
R6125:Pkdrej UTSW 15 85,816,384 (GRCm38) missense probably damaging 1.00
R6270:Pkdrej UTSW 15 85,821,105 (GRCm38) nonsense probably null
R6500:Pkdrej UTSW 15 85,819,546 (GRCm38) missense probably damaging 0.98
R6776:Pkdrej UTSW 15 85,817,309 (GRCm38) nonsense probably null
R6786:Pkdrej UTSW 15 85,818,649 (GRCm38) missense probably benign
R6866:Pkdrej UTSW 15 85,820,881 (GRCm38) missense probably damaging 1.00
R6954:Pkdrej UTSW 15 85,817,853 (GRCm38) nonsense probably null
R7086:Pkdrej UTSW 15 85,820,116 (GRCm38) missense probably damaging 1.00
R7231:Pkdrej UTSW 15 85,816,188 (GRCm38) missense possibly damaging 0.55
R7233:Pkdrej UTSW 15 85,821,148 (GRCm38) missense probably damaging 0.96
R7289:Pkdrej UTSW 15 85,821,100 (GRCm38) missense probably benign
R7549:Pkdrej UTSW 15 85,819,793 (GRCm38) missense probably damaging 1.00
R7582:Pkdrej UTSW 15 85,818,921 (GRCm38) missense possibly damaging 0.92
R7677:Pkdrej UTSW 15 85,815,587 (GRCm38) missense probably benign 0.01
R7791:Pkdrej UTSW 15 85,815,931 (GRCm38) missense possibly damaging 0.87
R7873:Pkdrej UTSW 15 85,816,523 (GRCm38) missense probably benign 0.29
R8121:Pkdrej UTSW 15 85,815,454 (GRCm38) missense probably benign 0.00
R8140:Pkdrej UTSW 15 85,818,410 (GRCm38) missense probably damaging 1.00
R8219:Pkdrej UTSW 15 85,821,292 (GRCm38) missense probably damaging 0.99
R8222:Pkdrej UTSW 15 85,817,439 (GRCm38) missense probably benign
R8432:Pkdrej UTSW 15 85,817,293 (GRCm38) missense probably benign 0.00
R8755:Pkdrej UTSW 15 85,819,606 (GRCm38) missense probably benign 0.00
R8786:Pkdrej UTSW 15 85,819,843 (GRCm38) missense probably benign 0.01
R8817:Pkdrej UTSW 15 85,818,573 (GRCm38) missense probably damaging 1.00
R8827:Pkdrej UTSW 15 85,815,531 (GRCm38) missense possibly damaging 0.76
R8966:Pkdrej UTSW 15 85,817,811 (GRCm38) missense probably damaging 0.99
R8988:Pkdrej UTSW 15 85,816,337 (GRCm38) missense probably damaging 0.99
R9028:Pkdrej UTSW 15 85,816,897 (GRCm38) missense probably damaging 1.00
R9257:Pkdrej UTSW 15 85,815,897 (GRCm38) missense probably damaging 1.00
R9279:Pkdrej UTSW 15 85,816,633 (GRCm38) missense probably damaging 1.00
R9404:Pkdrej UTSW 15 85,819,069 (GRCm38) missense probably benign 0.39
R9433:Pkdrej UTSW 15 85,819,869 (GRCm38) missense probably benign 0.03
R9454:Pkdrej UTSW 15 85,818,219 (GRCm38) missense probably benign 0.05
R9479:Pkdrej UTSW 15 85,815,370 (GRCm38) missense possibly damaging 0.64
R9720:Pkdrej UTSW 15 85,818,296 (GRCm38) missense possibly damaging 0.82
R9748:Pkdrej UTSW 15 85,820,670 (GRCm38) missense possibly damaging 0.91
R9760:Pkdrej UTSW 15 85,821,067 (GRCm38) missense probably benign 0.30
Z1177:Pkdrej UTSW 15 85,816,537 (GRCm38) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TGGGTCGTAGGACATGCTTC -3'
(R):5'- CCTTATCCTGAGCAGAGACGAG -3'

Sequencing Primer
(F):5'- CGTAGGACATGCTTCCATTCAGAATC -3'
(R):5'- CAATATCACTGTGCGTTGGTAC -3'
Posted On 2015-10-21