Mutagenetix > Incidental Mutation

Incidental Mutation 'R4697:Klhl40'

355785

Institutional Source

Beutler Lab

Gene Symbol

Klhl40

Ensembl Gene

ENSMUSG00000074001

Gene Name

kelch-like 40

Synonyms

MMRRC Submission

041947-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.132) question?

Stock #

R4697 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

121777607-121783818 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 121778734 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 320 (I320N)

Ref Sequence

ENSEMBL: ENSMUSP00000095873 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098272]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000098272
AA Change: I320N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000095873
Gene: ENSMUSG00000074001
AA Change: I320N

Domain	Start	End	E-Value	Type
BTB	33	128	4.61e-29	SMART
BACK	133	239	9.46e-30	SMART
low complexity region	262	276	N/A	INTRINSIC
Blast:BTB	300	355	2e-27	BLAST
Kelch	360	412	1.77e0	SMART
Kelch	413	462	1.29e-2	SMART
Kelch	463	510	4.68e-9	SMART
Kelch	511	557	2.06e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000215257

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216358

Meta Mutation Damage Score

0.5917

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.5%

Validation Efficiency

96% (75/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein containing a BACK domain, a BTB/POZ domain, and 5 Kelch repeats, however, its exact function is not known. The gene and the multi-domain protein structure are conserved across different taxa, including primates, rodents, chicken and zebrafish. [provided by RefSeq, Dec 2012]
PHENOTYPE: Homozygous disruption of this gene results in postnatal growth retardation, abnormal sarcomere morphology, skeletal muscle dysfunction, and complete postnatal lethality. Homozygotes for a null allele develop a nemaline-like myopathy. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9030624J02Rik	T	A	7: 118,791,448	I455N	probably damaging	Het
A2m	T	C	6: 121,638,284	M1T	probably null	Het
Aatf	T	A	11: 84,449,138	D449V	probably damaging	Het
Acbd3	T	A	1: 180,721,944		probably benign	Het
BC005561	A	G	5: 104,522,240	K1543E	probably benign	Het
Bicc1	T	A	10: 70,953,484	I366F	possibly damaging	Het
Ccdc74a	T	C	16: 17,649,749	S184P	possibly damaging	Het
Cntn4	T	C	6: 106,525,485	V401A	probably damaging	Het
Cux2	T	C	5: 121,873,753	T540A	probably damaging	Het
Disp2	G	T	2: 118,791,684	E966*	probably null	Het
Dpp7	A	G	2: 25,354,919	Y209H	probably benign	Het
Dstyk	T	A	1: 132,449,487	F277Y	probably damaging	Het
Dtx1	A	T	5: 120,694,408		probably null	Het
Ear-ps2	G	A	14: 44,047,060		noncoding transcript	Het
Ednra	T	C	8: 77,664,995	H422R	probably benign	Het
Erlec1	T	A	11: 30,952,640	I67F	probably benign	Het
Fam161b	G	A	12: 84,348,558		probably benign	Het
Gata5	A	T	2: 180,327,379	C345*	probably null	Het
Glmp	T	C	3: 88,328,274	V47A	probably damaging	Het
Gm9762	T	A	3: 78,966,550		noncoding transcript	Het
Gnas	A	T	2: 174,298,080	D14V	probably damaging	Het
Gnl3	T	C	14: 31,017,329	S53G	probably damaging	Het
Grhl3	C	T	4: 135,548,466	V527M	probably damaging	Het
Hoxd10	T	A	2: 74,694,187	L281*	probably null	Het
Kif16b	T	G	2: 142,690,694	Y1175S	probably benign	Het
Kif2b	A	G	11: 91,576,846	S204P	probably benign	Het
Ksr2	G	A	5: 117,708,147	R693Q	probably damaging	Het
Mis12	A	G	11: 71,025,326	K62E	possibly damaging	Het
Mlc1	A	G	15: 88,974,777	C102R	probably damaging	Het
Muc5b	T	C	7: 141,857,361	I1348T	unknown	Het
Myh7b	A	G	2: 155,629,322	E1130G	probably damaging	Het
Nat8f4	T	C	6: 85,901,386	T52A	probably benign	Het
Nxpe2	C	A	9: 48,320,521	V379L	probably benign	Het
Olfr1231	C	A	2: 89,302,902	S230I	possibly damaging	Het
Olfr1231	T	A	2: 89,302,903	S230C	probably damaging	Het
Olfr1448	C	T	19: 12,919,934	C125Y	probably damaging	Het
Olfr1465	A	T	19: 13,313,717	D189E	probably benign	Het
Olfr288	G	A	15: 98,186,868	R310W	probably damaging	Het
Pcdhga7	A	T	18: 37,717,208	Y756F	probably damaging	Het
Pcsk6	T	A	7: 65,959,241	Y284N	probably damaging	Het
Pdcd11	T	C	19: 47,126,347	V1367A	possibly damaging	Het
Postn	T	A	3: 54,375,071	N484K	probably damaging	Het
Prkd3	C	T	17: 78,961,171	V572I	probably benign	Het
Qser1	T	C	2: 104,787,183	S1005G	probably benign	Het
Radil	G	T	5: 142,486,801	D951E	probably benign	Het
Ripk1	C	T	13: 34,027,942	R352*	probably null	Het
Sacs	T	C	14: 61,212,747	F4081L	probably benign	Het
Sbf1	A	G	15: 89,315,085	V11A	possibly damaging	Het
Sgip1	T	A	4: 102,934,587	F536I	probably damaging	Het
Slc45a1	A	G	4: 150,638,284	L381P	probably damaging	Het
Smarcad1	C	T	6: 65,052,641	P71L	probably benign	Het
Spns1	T	A	7: 126,377,037	D14V	probably damaging	Het
Sv2c	T	A	13: 95,986,018	I417F	possibly damaging	Het
Tas2r113	T	A	6: 132,893,516	M169K	probably benign	Het
Tgm1	A	T	14: 55,705,681	N567K	probably benign	Het
Tln2	C	T	9: 67,395,461	R76Q	probably damaging	Het
Trpm6	T	C	19: 18,853,791	V1340A	probably benign	Het
Tspan18	A	T	2: 93,312,030		probably null	Het
Txndc11	C	T	16: 11,084,314	V679I	probably damaging	Het
Usf1	G	T	1: 171,416,964	G144V	possibly damaging	Het
Vmn1r59	T	C	7: 5,454,452	Y103C	probably damaging	Het
Vmn2r23	A	T	6: 123,741,826	I713F	probably damaging	Het
Vmn2r79	A	T	7: 87,037,960	I850F	probably damaging	Het
Wdr90	C	T	17: 25,855,363	R676H	probably benign	Het
Zfp867	G	A	11: 59,463,661	R281W	probably damaging	Het
Zfp939	T	C	7: 39,472,942		noncoding transcript	Het

Other mutations in Klhl40

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01391:Klhl40	APN	9	121778917	missense	probably damaging	1.00
IGL02123:Klhl40	APN	9	121779923	missense	probably benign	0.01
IGL03059:Klhl40	APN	9	121778137	missense	probably damaging	1.00
IGL03124:Klhl40	APN	9	121780685	missense	probably damaging	1.00
IGL03204:Klhl40	APN	9	121782630	missense	probably benign	0.03
IGL03366:Klhl40	APN	9	121783380	missense	probably damaging	1.00
R0506:Klhl40	UTSW	9	121778067	missense	probably damaging	0.98
R1735:Klhl40	UTSW	9	121779938	missense	probably benign	0.00
R2430:Klhl40	UTSW	9	121780601	missense	possibly damaging	0.57
R3685:Klhl40	UTSW	9	121782658	missense	probably damaging	1.00
R3839:Klhl40	UTSW	9	121780416	missense	possibly damaging	0.93
R3929:Klhl40	UTSW	9	121780676	missense	probably benign
R4326:Klhl40	UTSW	9	121778890	missense	probably benign	0.37
R4328:Klhl40	UTSW	9	121778890	missense	probably benign	0.37
R4664:Klhl40	UTSW	9	121780733	missense	probably damaging	1.00
R5228:Klhl40	UTSW	9	121777801	missense	probably benign	0.02
R6198:Klhl40	UTSW	9	121778767	missense	probably damaging	1.00
R6258:Klhl40	UTSW	9	121777960	missense	probably damaging	1.00
R7992:Klhl40	UTSW	9	121778682	missense	probably damaging	1.00
R8171:Klhl40	UTSW	9	121778557	missense	probably benign	0.14
R8544:Klhl40	UTSW	9	121778826	missense	probably damaging	0.99
R8669:Klhl40	UTSW	9	121778022	missense	probably benign	0.01
R8838:Klhl40	UTSW	9	121780041	missense	probably benign
R9239:Klhl40	UTSW	9	121778571	missense	probably benign	0.06
R9261:Klhl40	UTSW	9	121779936	missense	probably benign
R9402:Klhl40	UTSW	9	121780416	missense	possibly damaging	0.93
R9650:Klhl40	UTSW	9	121780017	missense	possibly damaging	0.80
R9671:Klhl40	UTSW	9	121778677	missense	probably benign
Z1177:Klhl40	UTSW	9	121780693	missense	probably benign	0.20

Predicted Primers

PCR Primer
(F):5'- TCGTGCTTTCCTGGAGACTC -3'
(R):5'- AAGTAAGCACTCATAGGGTCCTC -3'

Sequencing Primer
(F):5'- CTTTCCTGGAGACTCGCGTG -3'
(R):5'- CCTTGTTGTCCTCATTGTAGAAGAG -3'

Posted On

2015-10-21