Mutagenetix > Incidental Mutations

Incidental Mutation 'R4697:Ripk1'

355793

Institutional Source

Beutler Lab

Gene Symbol

Ripk1

Ensembl Gene

ENSMUSG00000021408

Gene Name

receptor (TNFRSF)-interacting serine-threonine kinase 1

Synonyms

Rinp, Rip1

MMRRC Submission

041947-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R4697 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

34002363-34037147 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 34027942 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 352 (R352*)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021844] [ENSMUST00000167374]

AlphaFold

Q60855

Predicted Effect

probably null
Transcript: ENSMUST00000021844
AA Change: R412*

SMART Domains

Protein: ENSMUSP00000021844
Gene: ENSMUSG00000021408
AA Change: R412*

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	17	286	1.2e-52	PFAM
Pfam:Pkinase	18	286	6.2e-51	PFAM
Pfam:Kinase-like	84	247	7.4e-8	PFAM
Pfam:RHIM	480	538	5.9e-10	PFAM
DEATH	558	654	1.2e-25	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000167374
AA Change: R412*

SMART Domains

Protein: ENSMUSP00000129831
Gene: ENSMUSG00000021408
AA Change: R412*

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	17	286	5.2e-54	PFAM
Pfam:Pkinase	18	286	1.1e-53	PFAM
Pfam:RHIM	493	539	5.2e-16	PFAM
DEATH	558	654	1.2e-25	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000171137
AA Change: R352*

SMART Domains

Protein: ENSMUSP00000128511
Gene: ENSMUSG00000021408
AA Change: R352*

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	4	116	2.6e-14	PFAM
Pfam:Pkinase	5	109	1.7e-14	PFAM
Pfam:Pkinase	92	227	2.9e-14	PFAM
Pfam:Pkinase_Tyr	94	227	2.9e-21	PFAM
Pfam:RHIM	421	479	2.3e-10	PFAM
DEATH	499	595	1.2e-25	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.5%

Validation Efficiency

96% (75/78)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene die within 1 and 3 days of birth displaying extensive apoptosis in both lymphoid and adipose tissue. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9030624J02Rik	T	A	7: 118,791,448	I455N	probably damaging	Het
A2m	T	C	6: 121,638,284	M1T	probably null	Het
Aatf	T	A	11: 84,449,138	D449V	probably damaging	Het
Acbd3	T	A	1: 180,721,944		probably benign	Het
BC005561	A	G	5: 104,522,240	K1543E	probably benign	Het
Bicc1	T	A	10: 70,953,484	I366F	possibly damaging	Het
Ccdc74a	T	C	16: 17,649,749	S184P	possibly damaging	Het
Cntn4	T	C	6: 106,525,485	V401A	probably damaging	Het
Cux2	T	C	5: 121,873,753	T540A	probably damaging	Het
Disp2	G	T	2: 118,791,684	E966*	probably null	Het
Dpp7	A	G	2: 25,354,919	Y209H	probably benign	Het
Dstyk	T	A	1: 132,449,487	F277Y	probably damaging	Het
Dtx1	A	T	5: 120,694,408		probably null	Het
Ear-ps2	G	A	14: 44,047,060		noncoding transcript	Het
Ednra	T	C	8: 77,664,995	H422R	probably benign	Het
Erlec1	T	A	11: 30,952,640	I67F	probably benign	Het
Fam161b	G	A	12: 84,348,558		probably benign	Het
Gata5	A	T	2: 180,327,379	C345*	probably null	Het
Glmp	T	C	3: 88,328,274	V47A	probably damaging	Het
Gm9762	T	A	3: 78,966,550		noncoding transcript	Het
Gnas	A	T	2: 174,298,080	D14V	probably damaging	Het
Gnl3	T	C	14: 31,017,329	S53G	probably damaging	Het
Grhl3	C	T	4: 135,548,466	V527M	probably damaging	Het
Hoxd10	T	A	2: 74,694,187	L281*	probably null	Het
Kif16b	T	G	2: 142,690,694	Y1175S	probably benign	Het
Kif2b	A	G	11: 91,576,846	S204P	probably benign	Het
Klhl40	T	A	9: 121,778,734	I320N	probably damaging	Het
Ksr2	G	A	5: 117,708,147	R693Q	probably damaging	Het
Mis12	A	G	11: 71,025,326	K62E	possibly damaging	Het
Mlc1	A	G	15: 88,974,777	C102R	probably damaging	Het
Muc5b	T	C	7: 141,857,361	I1348T	unknown	Het
Myh7b	A	G	2: 155,629,322	E1130G	probably damaging	Het
Nat8f4	T	C	6: 85,901,386	T52A	probably benign	Het
Nxpe2	C	A	9: 48,320,521	V379L	probably benign	Het
Olfr1231	C	A	2: 89,302,902	S230I	possibly damaging	Het
Olfr1231	T	A	2: 89,302,903	S230C	probably damaging	Het
Olfr1448	C	T	19: 12,919,934	C125Y	probably damaging	Het
Olfr1465	A	T	19: 13,313,717	D189E	probably benign	Het
Olfr288	G	A	15: 98,186,868	R310W	probably damaging	Het
Pcdhga7	A	T	18: 37,717,208	Y756F	probably damaging	Het
Pcsk6	T	A	7: 65,959,241	Y284N	probably damaging	Het
Pdcd11	T	C	19: 47,126,347	V1367A	possibly damaging	Het
Postn	T	A	3: 54,375,071	N484K	probably damaging	Het
Prkd3	C	T	17: 78,961,171	V572I	probably benign	Het
Qser1	T	C	2: 104,787,183	S1005G	probably benign	Het
Radil	G	T	5: 142,486,801	D951E	probably benign	Het
Sacs	T	C	14: 61,212,747	F4081L	probably benign	Het
Sbf1	A	G	15: 89,315,085	V11A	possibly damaging	Het
Sgip1	T	A	4: 102,934,587	F536I	probably damaging	Het
Slc45a1	A	G	4: 150,638,284	L381P	probably damaging	Het
Smarcad1	C	T	6: 65,052,641	P71L	probably benign	Het
Spns1	T	A	7: 126,377,037	D14V	probably damaging	Het
Sv2c	T	A	13: 95,986,018	I417F	possibly damaging	Het
Tas2r113	T	A	6: 132,893,516	M169K	probably benign	Het
Tgm1	A	T	14: 55,705,681	N567K	probably benign	Het
Tln2	C	T	9: 67,395,461	R76Q	probably damaging	Het
Trpm6	T	C	19: 18,853,791	V1340A	probably benign	Het
Tspan18	A	T	2: 93,312,030		probably null	Het
Txndc11	C	T	16: 11,084,314	V679I	probably damaging	Het
Usf1	G	T	1: 171,416,964	G144V	possibly damaging	Het
Vmn1r59	T	C	7: 5,454,452	Y103C	probably damaging	Het
Vmn2r23	A	T	6: 123,741,826	I713F	probably damaging	Het
Vmn2r79	A	T	7: 87,037,960	I850F	probably damaging	Het
Wdr90	C	T	17: 25,855,363	R676H	probably benign	Het
Zfp867	G	A	11: 59,463,661	R281W	probably damaging	Het
Zfp939	T	C	7: 39,472,942		noncoding transcript	Het

Other mutations in Ripk1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01443:Ripk1	APN	13	34015268	missense	probably damaging	0.96
IGL01873:Ripk1	APN	13	34009724	missense	probably damaging	1.00
IGL02383:Ripk1	APN	13	34015244	missense	probably damaging	1.00
IGL02478:Ripk1	APN	13	34010589	missense	probably damaging	1.00
R0115:Ripk1	UTSW	13	34009750	missense	probably damaging	1.00
R0481:Ripk1	UTSW	13	34009750	missense	probably damaging	1.00
R0630:Ripk1	UTSW	13	34027781	missense	probably damaging	1.00
R1105:Ripk1	UTSW	13	34028167	missense	probably benign
R1528:Ripk1	UTSW	13	34028147	missense	probably benign	0.01
R1834:Ripk1	UTSW	13	34015213	missense	probably benign	0.00
R2294:Ripk1	UTSW	13	34017008	missense	probably benign
R2384:Ripk1	UTSW	13	34030043	missense	probably benign	0.03
R4510:Ripk1	UTSW	13	34026748	missense	probably damaging	1.00
R4511:Ripk1	UTSW	13	34026748	missense	probably damaging	1.00
R5078:Ripk1	UTSW	13	34017099	missense	probably damaging	1.00
R5153:Ripk1	UTSW	13	34013296	missense	probably damaging	1.00
R5974:Ripk1	UTSW	13	34030101	nonsense	probably null
R6189:Ripk1	UTSW	13	34032501	missense	probably benign	0.16
R6676:Ripk1	UTSW	13	34010604	missense	probably damaging	1.00
R6905:Ripk1	UTSW	13	34027990	missense	probably benign
R6997:Ripk1	UTSW	13	34017117	missense	probably benign	0.00
R7009:Ripk1	UTSW	13	34030062	missense	probably damaging	1.00
R7956:Ripk1	UTSW	13	34009683	missense	probably benign	0.02
R8497:Ripk1	UTSW	13	34027951	missense	probably damaging	0.98
R8680:Ripk1	UTSW	13	34030049	missense	possibly damaging	0.54
R9021:Ripk1	UTSW	13	34021390	missense	probably benign	0.38
R9132:Ripk1	UTSW	13	34028201	missense	probably benign	0.01
Z1177:Ripk1	UTSW	13	34028135	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AACAACCTGGATCGCTGCAC -3'
(R):5'- CTGTAGTTCCAAATCCATGCTG -3'

Sequencing Primer
(F):5'- TGGATCGCTGCACAGTTC -3'
(R):5'- TCCATGCTGATTATACAATCCATTG -3'

Posted On

2015-10-21