Mutagenetix > Incidental Mutation

Incidental Mutation 'R4698:Tmem238'

355833

Institutional Source

Beutler Lab

Gene Symbol

Tmem238

Ensembl Gene

ENSMUSG00000030431

Gene Name

transmembrane protein 238

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.150) question?

Stock #

R4698 (G1)

Quality Score

129

Status

Not validated

Chromosome

Chromosomal Location

4784557-4789656 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 4789017 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 19 (E19*)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000013235] [ENSMUST00000032597] [ENSMUST00000078432] [ENSMUST00000168578]

AlphaFold

A9JSM3

Predicted Effect

probably benign
Transcript: ENSMUST00000013235

SMART Domains

Protein: ENSMUSP00000013235
Gene: ENSMUSG00000013091

Domain	Start	End	E-Value	Type
low complexity region	3	18	N/A	INTRINSIC
Pfam:TMEM190	21	147	3.3e-70	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000032597

SMART Domains

Protein: ENSMUSP00000032597
Gene: ENSMUSG00000030432

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L28e	5	120	3.3e-39	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000078432

SMART Domains

Protein: ENSMUSP00000104217
Gene: ENSMUSG00000030432

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L28e	5	121	2.5e-42	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000126794

SMART Domains

Protein: ENSMUSP00000117699
Gene: ENSMUSG00000030432

Domain	Start	End	E-Value	Type
Pfam:Ribosomal_L28e	8	68	1.2e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129888

Predicted Effect

probably null
Transcript: ENSMUST00000168578
AA Change: E176*

SMART Domains

Protein: ENSMUSP00000130452
Gene: ENSMUSG00000030431
AA Change: E176*

Domain	Start	End	E-Value	Type
Pfam:TMEM238	32	100	1.2e-32	PFAM
low complexity region	124	135	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000206315
AA Change: E19*

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206617

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700122O11Rik	A	G	17: 48,038,240 (GRCm38)	V11A	possibly damaging	Het
6030452D12Rik	T	C	8: 106,504,347 (GRCm38)	I55T	unknown	Het
Aadacl2	A	G	3: 60,025,039 (GRCm38)	D325G	probably benign	Het
Adh1	A	G	3: 138,282,513 (GRCm38)	S113G	probably benign	Het
Agxt2	T	C	15: 10,392,044 (GRCm38)		probably null	Het
Aicda	C	T	6: 122,553,888 (GRCm38)		probably benign	Het
Aifm2	T	C	10: 61,727,756 (GRCm38)	M135T	probably benign	Het
Asah2	T	C	19: 32,054,471 (GRCm38)		probably null	Het
Btbd17	T	C	11: 114,791,717 (GRCm38)	R390G	probably damaging	Het
Cadps	T	C	14: 12,705,654 (GRCm38)	E247G	possibly damaging	Het
Cds2	T	C	2: 132,304,953 (GRCm38)	I383T	probably damaging	Het
Celf3	T	A	3: 94,484,867 (GRCm38)		probably null	Het
Crhr2	T	C	6: 55,102,867 (GRCm38)	S162G	possibly damaging	Het
Dapl1	A	T	2: 59,504,774 (GRCm38)	K91*	probably null	Het
Ddx60	A	C	8: 62,012,424 (GRCm38)	M1372L	probably benign	Het
Dnah2	A	T	11: 69,498,532 (GRCm38)	F845I	probably damaging	Het
Dscam	T	C	16: 96,610,324 (GRCm38)	D1784G	probably damaging	Het
Ech1	T	C	7: 28,832,053 (GRCm38)	V310A	probably benign	Het
Eef1g	A	G	19: 8,977,966 (GRCm38)	D393G	possibly damaging	Het
Eif3k	T	C	7: 28,972,544 (GRCm38)	I172V	possibly damaging	Het
Foxd4	A	G	19: 24,900,261 (GRCm38)	F192L	probably damaging	Het
Gpr153	T	A	4: 152,281,783 (GRCm38)	S268R	probably damaging	Het
H3c13	C	A	3: 96,269,078 (GRCm38)	R129S	probably damaging	Het
Ivl	T	C	3: 92,571,391 (GRCm38)	K456E	unknown	Het
Kif20b	A	T	19: 34,951,544 (GRCm38)	D1190V	probably damaging	Het
Kif21a	T	A	15: 90,956,305 (GRCm38)	I1223L	possibly damaging	Het
Lmf1	T	C	17: 25,579,350 (GRCm38)	V55A	probably damaging	Het
Loxhd1	A	G	18: 77,372,291 (GRCm38)	E659G	possibly damaging	Het
Lrrc37a	T	C	11: 103,504,104 (GRCm38)	E165G	possibly damaging	Het
Mios	T	C	6: 8,228,113 (GRCm38)	Y677H	possibly damaging	Het
Mnx1	T	A	5: 29,474,059 (GRCm38)	K342M	unknown	Het
Mtpap	A	T	18: 4,375,724 (GRCm38)	T35S	possibly damaging	Het
Ndc1	C	G	4: 107,411,137 (GRCm38)	D623E	probably benign	Het
Nedd4l	A	G	18: 65,203,880 (GRCm38)	Y666C	probably damaging	Het
Or52s6	T	A	7: 103,442,635 (GRCm38)	I163F	possibly damaging	Het
Or5ac22	T	C	16: 59,315,357 (GRCm38)	T17A	probably damaging	Het
Or5b12b	T	G	19: 12,884,621 (GRCm38)	F247V	probably benign	Het
Or5m10b	A	G	2: 85,869,252 (GRCm38)	Y220C	possibly damaging	Het
Papss1	G	T	3: 131,607,331 (GRCm38)	V369F	probably damaging	Het
Pcdhac2	T	A	18: 37,145,769 (GRCm38)	Y601N	probably damaging	Het
Pde7a	C	T	3: 19,310,931 (GRCm38)	R24Q	probably damaging	Het
Phf21a	A	G	2: 92,356,952 (GRCm38)	D445G	probably damaging	Het
Plekho1	T	A	3: 95,995,652 (GRCm38)	N15I	possibly damaging	Het
Pprc1	T	C	19: 46,069,195 (GRCm38)		probably benign	Het
Ralgapa1	A	T	12: 55,677,276 (GRCm38)		probably null	Het
Rrp12	T	C	19: 41,873,042 (GRCm38)	E942G	probably benign	Het
Skor1	T	C	9: 63,144,548 (GRCm38)	D685G	probably benign	Het
Smim23	A	T	11: 32,824,510 (GRCm38)	I3N	possibly damaging	Het
Spata7	A	T	12: 98,664,277 (GRCm38)	I333F	probably damaging	Het
Sppl2c	T	C	11: 104,188,315 (GRCm38)	I647T	probably benign	Het
Srgap1	C	A	10: 121,792,487 (GRCm38)	R837L	probably benign	Het
Stpg2	C	A	3: 139,309,229 (GRCm38)	P385H	probably damaging	Het
Top2b	A	T	14: 16,387,331 (GRCm38)	K140*	probably null	Het
Trp53	T	A	11: 69,588,422 (GRCm38)	L142*	probably null	Het
Tyro3	A	T	2: 119,803,270 (GRCm38)	D133V	probably damaging	Het
Virma	T	A	4: 11,528,636 (GRCm38)	I1291N	probably damaging	Het
Vmn1r213	A	G	13: 23,011,337 (GRCm38)		probably benign	Het
Zbtb10	T	C	3: 9,264,550 (GRCm38)	S323P	possibly damaging	Het
Zfp521	A	T	18: 13,845,603 (GRCm38)	N584K	probably damaging	Het
Zfp944	A	G	17: 22,339,199 (GRCm38)	C356R	probably damaging	Het

Other mutations in Tmem238

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R3834:Tmem238	UTSW	7	4,789,079 (GRCm38)	missense	possibly damaging	0.48
R7140:Tmem238	UTSW	7	4,789,073 (GRCm38)	missense	possibly damaging	0.85
R7657:Tmem238	UTSW	7	4,789,227 (GRCm38)	missense	probably damaging	1.00
R8836:Tmem238	UTSW	7	4,789,521 (GRCm38)	missense	possibly damaging	0.96

Predicted Primers

PCR Primer
(F):5'- ATGAGCTCAGAGAACTGGCTAC -3'
(R):5'- GTACACCGGCAACATCGAGATC -3'

Sequencing Primer
(F):5'- ATGAGGCCTGGTGCACGTG -3'
(R):5'- AGATCTCGCGCCAGGAG -3'

Posted On

2015-10-21