Mutagenetix > Incidental Mutation

Incidental Mutation 'R4701:Cntn6'

356019

Institutional Source

Beutler Lab

Gene Symbol

Cntn6

Ensembl Gene

ENSMUSG00000030092

Gene Name

contactin 6

Synonyms

NB-3

MMRRC Submission

041949-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.117) question?

Stock #

R4701 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

104469751-104840367 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 104781321 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 397 (V397A)

Ref Sequence

ENSEMBL: ENSMUSP00000124714 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089215] [ENSMUST00000161070] [ENSMUST00000162872]

AlphaFold

Q9JMB8

Predicted Effect

probably benign
Transcript: ENSMUST00000089215
AA Change: V469A

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000086623
Gene: ENSMUSG00000030092
AA Change: V469A

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IGc2	41	107	5.24e-7	SMART
IG	129	217	2.28e-7	SMART
IGc2	240	304	4e-12	SMART
IGc2	330	393	4.52e-11	SMART
IGc2	422	486	5.48e-10	SMART
IGc2	512	584	1.44e-4	SMART
FN3	598	684	2.17e-11	SMART
FN3	701	787	8.62e0	SMART
FN3	803	888	9.92e-6	SMART
FN3	903	983	8.17e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161070
AA Change: V397A

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000124714
Gene: ENSMUSG00000030092
AA Change: V397A

Domain	Start	End	E-Value	Type
SCOP:d1cs6a4	4	40	5e-4	SMART
IG	57	145	2.28e-7	SMART
IGc2	168	232	4e-12	SMART
IGc2	258	321	4.52e-11	SMART
IGc2	350	414	5.48e-10	SMART
IGc2	440	512	1.44e-4	SMART
FN3	526	612	2.17e-11	SMART
FN3	629	715	8.62e0	SMART
FN3	731	816	9.92e-6	SMART
FN3	831	911	8.17e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162872
AA Change: V469A

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000124025
Gene: ENSMUSG00000030092
AA Change: V469A

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IGc2	41	107	5.24e-7	SMART
IG	129	217	2.28e-7	SMART
IGc2	240	304	4e-12	SMART
IGc2	330	393	4.52e-11	SMART
IGc2	422	486	5.48e-10	SMART
IGc2	512	584	1.44e-4	SMART
FN3	598	684	2.17e-11	SMART
FN3	701	787	8.62e0	SMART
FN3	803	888	9.92e-6	SMART
FN3	903	983	8.17e0	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.6%

Validation Efficiency

96% (108/112)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the immunoglobulin superfamily. It is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
PHENOTYPE: Mice homozygous for disruption of this gene display impaired coordination without any obvious morphological of physiological abnormalities in the brain. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aarsd1	T	C	11: 101,301,986 (GRCm39)	I196V	probably benign	Het
Aass	T	A	6: 23,075,855 (GRCm39)	K761*	probably null	Het
Abca13	A	G	11: 9,242,306 (GRCm39)	T1390A	possibly damaging	Het
Abhd16a	T	C	17: 35,315,582 (GRCm39)		probably null	Het
Acad11	C	T	9: 103,972,764 (GRCm39)	Q486*	probably null	Het
Actl9	T	C	17: 33,652,909 (GRCm39)	L323P	probably benign	Het
Adam12	T	A	7: 133,518,191 (GRCm39)	I650F	possibly damaging	Het
Adgre4	A	T	17: 56,091,971 (GRCm39)	D77V	probably damaging	Het
Ankrd26	A	G	6: 118,483,446 (GRCm39)	F1586S	possibly damaging	Het
Anpep	T	C	7: 79,489,213 (GRCm39)	T320A	probably benign	Het
Arl15	T	A	13: 114,104,261 (GRCm39)	C133S	probably benign	Het
Ascc3	A	G	10: 50,596,760 (GRCm39)	N1230S	possibly damaging	Het
Atf4	T	A	15: 80,141,618 (GRCm39)	I336K	probably damaging	Het
Atp7b	A	T	8: 22,490,137 (GRCm39)	S1044T	probably benign	Het
Atp8b4	A	G	2: 126,256,213 (GRCm39)	F249L	probably damaging	Het
AU021092	G	T	16: 5,030,057 (GRCm39)	N319K	probably benign	Het
Bbs4	A	G	9: 59,230,802 (GRCm39)	V440A	probably benign	Het
Bpifb4	G	T	2: 153,792,305 (GRCm39)	G450C	probably damaging	Het
Cadm1	G	A	9: 47,730,120 (GRCm39)		probably benign	Het
Ccser2	G	A	14: 36,660,654 (GRCm39)	L500F	probably damaging	Het
Cd22	T	A	7: 30,575,578 (GRCm39)	I155F	probably damaging	Het
Cdkl4	A	T	17: 80,851,081 (GRCm39)	V207E	probably damaging	Het
Cfap251	A	G	5: 123,460,676 (GRCm39)	K1213E	probably benign	Het
Cfap65	T	C	1: 74,958,067 (GRCm39)	D947G	probably damaging	Het
Cpox	T	A	16: 58,498,332 (GRCm39)	Y388*	probably null	Het
Dab1	C	T	4: 104,588,948 (GRCm39)	A524V	probably benign	Het
Dda1	T	A	8: 71,926,454 (GRCm39)	Y58N	probably damaging	Het
Dennd4a	C	T	9: 64,804,639 (GRCm39)	T1326I	possibly damaging	Het
Eps8l2	A	T	7: 140,937,173 (GRCm39)	I338F	probably damaging	Het
Fbxo42	A	G	4: 140,927,120 (GRCm39)	T467A	probably benign	Het
Flt4	T	C	11: 49,517,635 (GRCm39)	F319S	possibly damaging	Het
Fmn1	A	T	2: 113,414,416 (GRCm39)	Y895F	possibly damaging	Het
Gm6887	C	A	7: 42,114,517 (GRCm39)		noncoding transcript	Het
Grid2	A	G	6: 64,642,899 (GRCm39)	D887G	probably benign	Het
Grm6	C	T	11: 50,753,837 (GRCm39)	P714S	probably damaging	Het
Gsto2	A	G	19: 47,873,095 (GRCm39)	I157V	probably benign	Het
Il15ra	A	G	2: 11,723,156 (GRCm39)		probably null	Het
Impg1	A	G	9: 80,221,682 (GRCm39)	F713L	probably benign	Het
Jag1	T	A	2: 136,936,376 (GRCm39)	T373S	probably benign	Het
Kcnh3	T	A	15: 99,139,826 (GRCm39)	L904Q	probably benign	Het
Kctd19	C	A	8: 106,117,061 (GRCm39)	G356V	possibly damaging	Het
Kdm5b	T	A	1: 134,533,750 (GRCm39)		probably benign	Het
Kif1a	T	C	1: 93,006,557 (GRCm39)	I37V	probably damaging	Het
Lama5	G	A	2: 179,833,489 (GRCm39)	R1508C	probably damaging	Het
Lamb1	T	A	12: 31,316,847 (GRCm39)	C65*	probably null	Het
Lingo1	A	G	9: 56,527,542 (GRCm39)	F349S	probably damaging	Het
Loxl4	G	A	19: 42,596,052 (GRCm39)	H147Y	probably benign	Het
Lrrn4cl	T	A	19: 8,829,419 (GRCm39)	N132K	probably damaging	Het
Med17	A	T	9: 15,181,656 (GRCm39)	H31Q	probably damaging	Het
Med23	A	T	10: 24,769,546 (GRCm39)	L476F	probably damaging	Het
Mgst1	A	T	6: 138,127,836 (GRCm39)	D66V	probably damaging	Het
Mroh2a	T	C	1: 88,162,334 (GRCm39)		probably null	Het
Mroh2a	A	C	1: 88,169,340 (GRCm39)	I672L	probably benign	Het
Muc4	A	T	16: 32,576,220 (GRCm39)		probably benign	Het
Myo18a	C	T	11: 77,708,491 (GRCm39)	T30M	probably damaging	Het
Ncapg2	G	T	12: 116,404,238 (GRCm39)	R903L	probably benign	Het
Nme1	A	G	11: 93,856,734 (GRCm39)	I9T	probably damaging	Het
Nmt2	T	A	2: 3,323,678 (GRCm39)	I357N	probably benign	Het
Nphp4	T	C	4: 152,581,116 (GRCm39)	F100S	probably damaging	Het
Oca2	C	A	7: 55,904,750 (GRCm39)	T72K	probably benign	Het
Or52e4	A	T	7: 104,706,086 (GRCm39)	D211V	probably damaging	Het
Or52e7	A	T	7: 104,684,798 (GRCm39)	D131V	probably damaging	Het
Or52z15	G	A	7: 103,332,269 (GRCm39)	V105M	probably damaging	Het
Or7h8	T	C	9: 20,123,921 (GRCm39)	I92T	probably damaging	Het
Or9s15	C	A	1: 92,525,160 (GRCm39)	D306E	probably benign	Het
Plce1	A	T	19: 38,713,451 (GRCm39)	T1240S	probably benign	Het
Plch1	A	T	3: 63,606,917 (GRCm39)		probably null	Het
Plxna4	T	C	6: 32,493,623 (GRCm39)	D331G	probably damaging	Het
Ppp1r3a	T	C	6: 14,718,992 (GRCm39)	T641A	probably benign	Het
Rab32	A	G	10: 10,426,598 (GRCm39)	L116P	probably benign	Het
Recql4	C	T	15: 76,592,785 (GRCm39)	C302Y	probably damaging	Het
Rorc	G	C	3: 94,299,017 (GRCm39)	E391Q	probably null	Het
Saa4	A	T	7: 46,381,051 (GRCm39)	F24I	possibly damaging	Het
Sall1	T	A	8: 89,757,788 (GRCm39)	K772M	probably damaging	Het
Sdk1	T	G	5: 142,170,986 (GRCm39)	L1950V	probably damaging	Het
Sil1	T	C	18: 35,399,949 (GRCm39)	E352G	probably benign	Het
Slc26a3	C	T	12: 31,497,773 (GRCm39)	P59L	probably damaging	Het
Smco2	T	C	6: 146,763,440 (GRCm39)		probably benign	Het
Sppl3	A	G	5: 115,241,372 (GRCm39)		probably null	Het
St6gal2	T	A	17: 55,803,345 (GRCm39)	V360D	probably damaging	Het
Stard9	G	A	2: 120,536,194 (GRCm39)	R345Q	possibly damaging	Het
Susd4	T	A	1: 182,719,626 (GRCm39)	Y414N	probably damaging	Het
Tenm4	T	C	7: 96,544,556 (GRCm39)	Y2191H	probably damaging	Het
Tln2	A	G	9: 67,253,809 (GRCm39)	V754A	probably benign	Het
Tmem132c	T	A	5: 127,641,560 (GRCm39)		probably benign	Het
Tnn	A	T	1: 159,975,338 (GRCm39)	S30T	possibly damaging	Het
Trpd52l3	G	T	19: 29,981,895 (GRCm39)	V217F	probably damaging	Het
Trpm1	G	T	7: 63,893,248 (GRCm39)	L1033F	probably damaging	Het
Tulp2	A	G	7: 45,167,348 (GRCm39)	E182G	probably damaging	Het
Ubr4	A	G	4: 139,198,647 (GRCm39)	K4490R	possibly damaging	Het
Usp17la	A	T	7: 104,509,856 (GRCm39)	R154*	probably null	Het
Vmn2r17	T	G	5: 109,575,849 (GRCm39)	M240R	probably damaging	Het
Vmn2r22	T	A	6: 123,627,428 (GRCm39)	N56I	probably benign	Het
Zdhhc21	A	T	4: 82,738,571 (GRCm39)	I206N	possibly damaging	Het
Zfp148	T	A	16: 33,277,278 (GRCm39)	D122E	probably benign	Het
Zfp804a	A	T	2: 82,086,926 (GRCm39)	S252C	probably damaging	Het
Zgrf1	C	T	3: 127,392,353 (GRCm39)	T1291I	probably benign	Het

Other mutations in Cntn6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00547:Cntn6	APN	6	104,627,361 (GRCm39)	missense	probably damaging	0.99
IGL01331:Cntn6	APN	6	104,751,484 (GRCm39)	missense	probably damaging	1.00
IGL01619:Cntn6	APN	6	104,705,335 (GRCm39)	splice site	probably benign
IGL02028:Cntn6	APN	6	104,836,387 (GRCm39)	missense	probably damaging	0.99
IGL02420:Cntn6	APN	6	104,823,103 (GRCm39)	critical splice donor site	probably null
IGL02557:Cntn6	APN	6	104,751,496 (GRCm39)	missense	probably damaging	1.00
IGL03000:Cntn6	APN	6	104,781,347 (GRCm39)	missense	probably damaging	1.00
IGL03367:Cntn6	APN	6	104,781,299 (GRCm39)	missense	probably damaging	1.00
IGL03383:Cntn6	APN	6	104,753,418 (GRCm39)	splice site	probably benign
PIT4366001:Cntn6	UTSW	6	104,809,498 (GRCm39)	missense	probably benign	0.05
R0490:Cntn6	UTSW	6	104,810,879 (GRCm39)	missense	possibly damaging	0.91
R0583:Cntn6	UTSW	6	104,753,275 (GRCm39)	missense	possibly damaging	0.79
R0636:Cntn6	UTSW	6	104,840,109 (GRCm39)	missense	probably benign	0.00
R0654:Cntn6	UTSW	6	104,753,389 (GRCm39)	missense	probably benign	0.00
R0960:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably benign	0.01
R1241:Cntn6	UTSW	6	104,809,470 (GRCm39)	missense	probably damaging	1.00
R1385:Cntn6	UTSW	6	104,838,861 (GRCm39)	missense	probably benign	0.07
R1401:Cntn6	UTSW	6	104,781,359 (GRCm39)	missense	possibly damaging	0.65
R1478:Cntn6	UTSW	6	104,753,389 (GRCm39)	missense	probably benign	0.00
R1542:Cntn6	UTSW	6	104,825,061 (GRCm39)	missense	probably damaging	1.00
R1593:Cntn6	UTSW	6	104,809,541 (GRCm39)	missense	possibly damaging	0.58
R1840:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably damaging	1.00
R2066:Cntn6	UTSW	6	104,838,783 (GRCm39)	nonsense	probably null
R2097:Cntn6	UTSW	6	104,838,910 (GRCm39)	missense	probably damaging	0.99
R2289:Cntn6	UTSW	6	104,545,989 (GRCm39)	start gained	probably benign
R2429:Cntn6	UTSW	6	104,627,526 (GRCm39)	missense	possibly damaging	0.96
R2967:Cntn6	UTSW	6	104,703,198 (GRCm39)	missense	probably benign	0.04
R4009:Cntn6	UTSW	6	104,810,783 (GRCm39)	missense	probably damaging	0.98
R4476:Cntn6	UTSW	6	104,749,522 (GRCm39)	missense	probably damaging	1.00
R4664:Cntn6	UTSW	6	104,705,245 (GRCm39)	missense	probably benign	0.20
R4666:Cntn6	UTSW	6	104,705,245 (GRCm39)	missense	probably benign	0.20
R4780:Cntn6	UTSW	6	104,822,745 (GRCm39)	missense	probably damaging	1.00
R4854:Cntn6	UTSW	6	104,836,436 (GRCm39)	missense	possibly damaging	0.95
R4965:Cntn6	UTSW	6	104,751,435 (GRCm39)	missense	probably damaging	0.99
R5051:Cntn6	UTSW	6	104,749,558 (GRCm39)	missense	probably damaging	1.00
R5075:Cntn6	UTSW	6	104,809,991 (GRCm39)	missense	probably damaging	1.00
R5152:Cntn6	UTSW	6	104,546,074 (GRCm39)	intron	probably benign
R5291:Cntn6	UTSW	6	104,703,096 (GRCm39)	missense	probably damaging	1.00
R5388:Cntn6	UTSW	6	104,809,523 (GRCm39)	missense	probably damaging	1.00
R5852:Cntn6	UTSW	6	104,812,706 (GRCm39)	missense	probably damaging	0.97
R5937:Cntn6	UTSW	6	104,810,064 (GRCm39)	missense	possibly damaging	0.68
R5980:Cntn6	UTSW	6	104,825,093 (GRCm39)	missense	probably damaging	0.98
R6290:Cntn6	UTSW	6	104,744,851 (GRCm39)	missense	probably damaging	1.00
R6338:Cntn6	UTSW	6	104,703,100 (GRCm39)	missense	probably damaging	1.00
R6396:Cntn6	UTSW	6	104,627,461 (GRCm39)	missense	probably damaging	1.00
R6447:Cntn6	UTSW	6	104,836,409 (GRCm39)	missense	probably damaging	1.00
R6860:Cntn6	UTSW	6	104,838,907 (GRCm39)	missense	possibly damaging	0.95
R6871:Cntn6	UTSW	6	104,822,719 (GRCm39)	frame shift	probably null
R7012:Cntn6	UTSW	6	104,751,441 (GRCm39)	missense	probably benign	0.01
R7012:Cntn6	UTSW	6	104,703,223 (GRCm39)	missense	probably damaging	0.98
R7337:Cntn6	UTSW	6	104,627,491 (GRCm39)	missense	probably damaging	0.99
R7658:Cntn6	UTSW	6	104,627,444 (GRCm39)	missense	probably benign	0.29
R8133:Cntn6	UTSW	6	104,705,298 (GRCm39)	missense	probably benign	0.19
R8463:Cntn6	UTSW	6	104,749,580 (GRCm39)	missense	possibly damaging	0.64
R8909:Cntn6	UTSW	6	104,825,093 (GRCm39)	missense	probably benign	0.05
R9232:Cntn6	UTSW	6	104,815,781 (GRCm39)	missense	probably damaging	1.00
R9287:Cntn6	UTSW	6	104,809,471 (GRCm39)	missense	possibly damaging	0.89
R9454:Cntn6	UTSW	6	104,781,308 (GRCm39)	missense	possibly damaging	0.82
R9698:Cntn6	UTSW	6	104,810,044 (GRCm39)	nonsense	probably null
X0020:Cntn6	UTSW	6	104,744,845 (GRCm39)	missense	probably benign	0.00
Z1177:Cntn6	UTSW	6	104,809,545 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACTCTTATGCCTTTTGTGCCAATG -3'
(R):5'- ACCGTAGCATCACATTCCTAAATG -3'

Sequencing Primer
(F):5'- ATGCCTTTTGTGCCAATGTTTAG -3'
(R):5'- TCACATTCCTAAATGGGACACC -3'

Posted On

2015-10-21