Mutagenetix > Incidental Mutation

Incidental Mutation 'R4744:Snx29'

356607

Institutional Source

Beutler Lab

Gene Symbol

Snx29

Ensembl Gene

ENSMUSG00000071669

Gene Name

sorting nexin 29

Synonyms

Rundc2a, Gm11170, LOC385605, LOC381035, 4933437K13Rik

MMRRC Submission

042027-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4744 (G1)

Quality Score

148

Status

Validated

Chromosome

Chromosomal Location

11140772-11573336 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 11167773 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 25 (Q25*)

Ref Sequence

ENSEMBL: ENSMUSP00000138025 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000115814] [ENSMUST00000180792]

AlphaFold

Q9D3S3

Predicted Effect

probably null
Transcript: ENSMUST00000115814
AA Change: Q25*

SMART Domains

Protein: ENSMUSP00000111481
Gene: ENSMUSG00000071669
AA Change: Q25*

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.98e-5	PROSPERO
internal_repeat_1	203	222	2.98e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000180792
AA Change: Q25*

SMART Domains

Protein: ENSMUSP00000138025
Gene: ENSMUSG00000071669
AA Change: Q25*

Domain	Start	End	E-Value	Type
low complexity region	64	74	N/A	INTRINSIC
RUN	115	178	7.89e-26	SMART
internal_repeat_1	192	211	2.63e-5	PROSPERO
internal_repeat_1	203	222	2.63e-5	PROSPERO
low complexity region	252	262	N/A	INTRINSIC
low complexity region	270	275	N/A	INTRINSIC
low complexity region	314	323	N/A	INTRINSIC
low complexity region	445	462	N/A	INTRINSIC
coiled coil region	467	548	N/A	INTRINSIC
PX	661	764	3.13e-9	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

99% (82/83)

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930519G04Rik	T	C	5: 115,017,617 (GRCm39)	S143P	possibly damaging	Het
4933427D14Rik	T	C	11: 72,066,365 (GRCm39)	K614E	probably damaging	Het
Aatk	A	G	11: 119,906,948 (GRCm39)	M155T	possibly damaging	Het
Acvr2b	T	C	9: 119,260,328 (GRCm39)	L333P	probably damaging	Het
Adam22	T	C	5: 8,128,699 (GRCm39)	E865G	probably damaging	Het
Add2	A	G	6: 86,087,870 (GRCm39)	S358G	probably damaging	Het
Agap2	T	C	10: 126,926,072 (GRCm39)		probably null	Het
Alkbh8	G	A	9: 3,344,604 (GRCm39)	W49*	probably null	Het
AU015228	A	T	2: 129,942,549 (GRCm39)		noncoding transcript	Het
Bank1	G	T	3: 135,953,450 (GRCm39)	R102S	probably benign	Het
Brap	T	A	5: 121,800,193 (GRCm39)	D27E	probably damaging	Het
Cyb5r2	G	T	7: 107,349,484 (GRCm39)	H276N	possibly damaging	Het
Dhh	A	G	15: 98,792,139 (GRCm39)	F290L	possibly damaging	Het
Dhrs7	T	A	12: 72,699,025 (GRCm39)	N319I	possibly damaging	Het
Ebpl	A	G	14: 61,597,682 (GRCm39)	V53A	probably damaging	Het
Eif3j2	TGCCGCCGCCGCCGCCGCCGCCGCCGCC	TGCCGCCGCCGCCGCCGCCGCCGCC	18: 43,610,782 (GRCm39)		probably benign	Het
Etnk1	A	C	6: 143,132,319 (GRCm39)	N220T	probably damaging	Het
F11r	T	A	1: 171,288,166 (GRCm39)	V64D	probably benign	Het
Fam171a1	T	C	2: 3,225,946 (GRCm39)	S360P	probably damaging	Het
Fignl1	A	G	11: 11,751,585 (GRCm39)	M490T	probably damaging	Het
Fpr-rs7	A	T	17: 20,334,265 (GRCm39)	M75K	probably benign	Het
Fzd7	T	A	1: 59,523,595 (GRCm39)	F493I	possibly damaging	Het
Galnt14	G	T	17: 73,814,828 (GRCm39)	P412T	probably damaging	Het
Gcg	T	A	2: 62,308,975 (GRCm39)	S60C	probably damaging	Het
Ggt1	A	G	10: 75,421,733 (GRCm39)	K527E	probably benign	Het
Gm16551	T	A	9: 74,758,153 (GRCm39)		noncoding transcript	Het
Gm9972	A	G	11: 42,927,517 (GRCm39)	K55E	unknown	Het
Gpr141	T	A	13: 19,935,884 (GRCm39)	D297V	probably benign	Het
Grin2b	G	A	6: 135,755,697 (GRCm39)	S539L	probably damaging	Het
Hhipl1	A	T	12: 108,286,238 (GRCm39)	N515I	possibly damaging	Het
Hmcn1	T	G	1: 150,453,363 (GRCm39)	E5317D	probably damaging	Het
Hsf5	T	A	11: 87,513,617 (GRCm39)	N227K	probably benign	Het
Igfn1	A	T	1: 135,910,196 (GRCm39)	D129E	probably benign	Het
Invs	T	C	4: 48,397,609 (GRCm39)	F339L	probably damaging	Het
Jak2	T	A	19: 29,239,656 (GRCm39)	S17T	probably benign	Het
Mdga2	T	A	12: 66,844,501 (GRCm39)	I166F	probably benign	Het
Nck1	T	C	9: 100,388,797 (GRCm39)	I6V	probably benign	Het
Neb	T	C	2: 52,040,589 (GRCm39)	D6624G	probably benign	Het
Nmur2	A	G	11: 55,931,661 (GRCm39)	Y17H	probably benign	Het
Nwd2	T	C	5: 63,964,310 (GRCm39)	L1298P	probably damaging	Het
Ocel1	A	G	8: 71,825,397 (GRCm39)	E161G	probably damaging	Het
Or1j16	A	T	2: 36,530,991 (GRCm39)		probably null	Het
Pabpc2	A	G	18: 39,907,881 (GRCm39)	Y382C	probably benign	Het
Panx1	A	G	9: 14,921,594 (GRCm39)		probably benign	Het
Pdhx	A	T	2: 102,872,641 (GRCm39)	V147D	probably benign	Het
Pigz	A	T	16: 31,764,151 (GRCm39)	H403L	probably damaging	Het
Pilra	T	C	5: 137,833,769 (GRCm39)		probably null	Het
Rbm47	T	C	5: 66,184,036 (GRCm39)	D189G	probably damaging	Het
Rhobtb2	A	G	14: 70,031,451 (GRCm39)	L558P	probably damaging	Het
Scarf2	G	A	16: 17,621,380 (GRCm39)	R322H	probably damaging	Het
Septin3	T	C	15: 82,174,658 (GRCm39)		probably null	Het
Sirt2	T	C	7: 28,476,438 (GRCm39)	F26L	probably damaging	Het
Slc1a1	A	T	19: 28,871,925 (GRCm39)	T133S	probably benign	Het
Slc1a2	A	G	2: 102,568,214 (GRCm39)	I84V	probably benign	Het
Slc28a2b	A	T	2: 122,353,286 (GRCm39)	K489*	probably null	Het
Slc6a9	A	T	4: 117,725,092 (GRCm39)	Q562L	probably benign	Het
St6galnac6	A	G	2: 32,508,555 (GRCm39)	I231V	probably damaging	Het
Stard9	A	G	2: 120,526,604 (GRCm39)	T954A	probably benign	Het
Sufu	A	G	19: 46,472,069 (GRCm39)	M443V	possibly damaging	Het
Sv2b	T	C	7: 74,856,266 (GRCm39)	D8G	probably benign	Het
Tapbpl	G	A	6: 125,205,248 (GRCm39)	R233W	probably damaging	Het
Tex10	A	G	4: 48,469,990 (GRCm39)	L25S	probably benign	Het
Trp53bp1	A	T	2: 121,041,794 (GRCm39)	V1254D	probably damaging	Het
Ugt3a1	T	A	15: 9,310,639 (GRCm39)	I307N	probably benign	Het
Unc13c	T	C	9: 73,839,126 (GRCm39)	D575G	probably damaging	Het
Usf2	A	T	7: 30,654,197 (GRCm39)	D166E	probably damaging	Het
Usp25	T	A	16: 76,911,877 (GRCm39)	L969M	probably damaging	Het
Usp32	G	A	11: 84,885,219 (GRCm39)	P1276L	probably damaging	Het
Vmn2r8	T	A	5: 108,956,447 (GRCm39)	E58D	probably benign	Het
Zfp462	G	T	4: 55,011,598 (GRCm39)	C40F	probably damaging	Het

Other mutations in Snx29

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00733:Snx29	APN	16	11,221,366 (GRCm39)	missense	probably damaging	0.97
IGL02207:Snx29	APN	16	11,556,216 (GRCm39)	missense	probably damaging	1.00
PIT1430001:Snx29	UTSW	16	11,221,488 (GRCm39)	missense	probably benign	0.00
PIT4810001:Snx29	UTSW	16	11,218,845 (GRCm39)	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11,478,417 (GRCm39)	missense	probably damaging	1.00
R0240:Snx29	UTSW	16	11,478,417 (GRCm39)	missense	probably damaging	1.00
R0276:Snx29	UTSW	16	11,556,237 (GRCm39)	missense	probably benign	0.01
R0506:Snx29	UTSW	16	11,213,167 (GRCm39)	missense	probably benign	0.15
R0621:Snx29	UTSW	16	11,223,651 (GRCm39)	splice site	probably null
R0975:Snx29	UTSW	16	11,165,735 (GRCm39)	missense	possibly damaging	0.66
R1225:Snx29	UTSW	16	11,238,550 (GRCm39)	intron	probably benign
R1406:Snx29	UTSW	16	11,217,657 (GRCm39)	missense	probably benign	0.38
R1406:Snx29	UTSW	16	11,217,657 (GRCm39)	missense	probably benign	0.38
R1452:Snx29	UTSW	16	11,449,335 (GRCm39)	missense	probably damaging	1.00
R1515:Snx29	UTSW	16	11,217,701 (GRCm39)	critical splice donor site	probably null
R1874:Snx29	UTSW	16	11,185,545 (GRCm39)	missense	probably benign	0.01
R1953:Snx29	UTSW	16	11,217,647 (GRCm39)	nonsense	probably null
R1978:Snx29	UTSW	16	11,185,588 (GRCm39)	missense	probably benign	0.23
R2054:Snx29	UTSW	16	11,449,356 (GRCm39)	missense	probably damaging	1.00
R2105:Snx29	UTSW	16	11,328,898 (GRCm39)	missense	possibly damaging	0.72
R2128:Snx29	UTSW	16	11,218,835 (GRCm39)	missense	probably damaging	0.98
R2152:Snx29	UTSW	16	11,218,707 (GRCm39)	missense	possibly damaging	0.95
R2912:Snx29	UTSW	16	11,265,317 (GRCm39)	missense	probably damaging	0.99
R2913:Snx29	UTSW	16	11,265,317 (GRCm39)	missense	probably damaging	0.99
R2914:Snx29	UTSW	16	11,265,317 (GRCm39)	missense	probably damaging	0.99
R4468:Snx29	UTSW	16	11,238,565 (GRCm39)	splice site	probably null
R4469:Snx29	UTSW	16	11,238,565 (GRCm39)	splice site	probably null
R4612:Snx29	UTSW	16	11,265,359 (GRCm39)	missense	probably damaging	0.99
R4798:Snx29	UTSW	16	11,238,600 (GRCm39)	missense	probably damaging	1.00
R5000:Snx29	UTSW	16	11,221,371 (GRCm39)	missense	probably damaging	0.99
R5165:Snx29	UTSW	16	11,238,639 (GRCm39)	missense	probably damaging	0.98
R5207:Snx29	UTSW	16	11,556,227 (GRCm39)	missense	probably damaging	1.00
R5235:Snx29	UTSW	16	11,231,110 (GRCm39)	missense	possibly damaging	0.94
R5274:Snx29	UTSW	16	11,556,268 (GRCm39)	missense	probably damaging	1.00
R5277:Snx29	UTSW	16	11,217,688 (GRCm39)	missense	possibly damaging	0.82
R5462:Snx29	UTSW	16	11,328,876 (GRCm39)	missense	possibly damaging	0.89
R5655:Snx29	UTSW	16	11,573,185 (GRCm39)	missense	probably damaging	1.00
R6036:Snx29	UTSW	16	11,556,301 (GRCm39)	splice site	probably null
R6036:Snx29	UTSW	16	11,556,301 (GRCm39)	splice site	probably null
R6326:Snx29	UTSW	16	11,221,430 (GRCm39)	missense	probably benign
R6576:Snx29	UTSW	16	11,532,920 (GRCm39)	critical splice donor site	probably null
R7406:Snx29	UTSW	16	11,573,180 (GRCm39)	missense	probably damaging	1.00
R7552:Snx29	UTSW	16	11,238,649 (GRCm39)	critical splice donor site	probably null
R7555:Snx29	UTSW	16	11,218,806 (GRCm39)	missense	probably benign	0.02
R7736:Snx29	UTSW	16	11,185,588 (GRCm39)	missense	probably benign	0.23
R7962:Snx29	UTSW	16	11,231,221 (GRCm39)	critical splice donor site	probably null
R8101:Snx29	UTSW	16	11,389,580 (GRCm39)	missense	probably benign	0.16
R8415:Snx29	UTSW	16	11,265,291 (GRCm39)	missense	probably damaging	1.00
R8549:Snx29	UTSW	16	11,532,920 (GRCm39)	critical splice donor site	probably null
R9010:Snx29	UTSW	16	11,449,391 (GRCm39)	missense	probably benign	0.00
R9091:Snx29	UTSW	16	11,213,155 (GRCm39)	missense	probably benign	0.33
R9099:Snx29	UTSW	16	11,478,435 (GRCm39)	missense	probably damaging	1.00
R9176:Snx29	UTSW	16	11,236,728 (GRCm39)	missense	probably benign
R9258:Snx29	UTSW	16	11,532,799 (GRCm39)	missense	possibly damaging	0.78
R9270:Snx29	UTSW	16	11,213,155 (GRCm39)	missense	probably benign	0.33
R9672:Snx29	UTSW	16	11,478,515 (GRCm39)	missense	probably benign	0.00
R9778:Snx29	UTSW	16	11,223,609 (GRCm39)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- CTGGGGATGCCATGCTGG -3'
(R):5'- GGTGAAGAGGTTTTGAAAATGACC -3'

Sequencing Primer
(F):5'- ATGCTGGCTTCTTACCTCTGTGAAG -3'
(R):5'- CAAAGGAGTGACGTACTC -3'

Posted On

2015-11-11