Mutagenetix > Incidental Mutation

Incidental Mutation 'R4762:Ralgds'

356923

Institutional Source

Beutler Lab

Gene Symbol

Ralgds

Ensembl Gene

ENSMUSG00000026821

Gene Name

ral guanine nucleotide dissociation stimulator

Synonyms

RalGDS, Rgds, Gnds

MMRRC Submission

042403-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.148) question?

Stock #

R4762 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28403137-28443093 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 28442164 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 858 (D858G)

Ref Sequence

ENSEMBL: ENSMUSP00000109526 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028161] [ENSMUST00000028170] [ENSMUST00000100241] [ENSMUST00000113893] [ENSMUST00000140704]

AlphaFold

Q03385

Predicted Effect

probably benign
Transcript: ENSMUST00000028161

SMART Domains

Protein: ENSMUSP00000028161
Gene: ENSMUSG00000026818

Domain	Start	End	E-Value	Type
Pfam:COesterase	1	542	2.4e-163	PFAM
Pfam:Abhydrolase_3	121	226	8e-8	PFAM
low complexity region	568	589	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000028170
AA Change: D815G

PolyPhen 2 Score 0.875 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000028170
Gene: ENSMUSG00000026821
AA Change: D815G

Domain	Start	End	E-Value	Type
RasGEFN	56	194	4.02e-37	SMART
low complexity region	239	285	N/A	INTRINSIC
RasGEF	320	587	5.28e-118	SMART
low complexity region	613	626	N/A	INTRINSIC
low complexity region	646	655	N/A	INTRINSIC
low complexity region	683	712	N/A	INTRINSIC
low complexity region	716	726	N/A	INTRINSIC
RA	736	823	6.51e-22	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000100241
AA Change: D870G

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000097812
Gene: ENSMUSG00000026821
AA Change: D870G

Domain	Start	End	E-Value	Type
RasGEFN	111	249	4.02e-37	SMART
low complexity region	294	340	N/A	INTRINSIC
RasGEF	375	642	5.28e-118	SMART
low complexity region	668	681	N/A	INTRINSIC
low complexity region	701	710	N/A	INTRINSIC
low complexity region	738	767	N/A	INTRINSIC
low complexity region	771	781	N/A	INTRINSIC
RA	791	878	6.51e-22	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000113893
AA Change: D858G

PolyPhen 2 Score 0.972 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000109526
Gene: ENSMUSG00000026821
AA Change: D858G

Domain	Start	End	E-Value	Type
RasGEFN	111	237	1.25e-42	SMART
low complexity region	282	328	N/A	INTRINSIC
RasGEF	363	630	5.28e-118	SMART
low complexity region	656	669	N/A	INTRINSIC
low complexity region	689	698	N/A	INTRINSIC
low complexity region	726	755	N/A	INTRINSIC
low complexity region	759	769	N/A	INTRINSIC
RA	779	866	6.51e-22	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128680

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130281

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137513

Predicted Effect

probably damaging
Transcript: ENSMUST00000140704
AA Change: D115G

PolyPhen 2 Score 0.958 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000118966
Gene: ENSMUSG00000026821
AA Change: D115G

Domain	Start	End	E-Value	Type
low complexity region	4	13	N/A	INTRINSIC
RA	36	123	6.51e-22	SMART

Meta Mutation Damage Score

0.8682

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

100% (86/86)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Guanine nucleotide dissociation stimulators (GDSs, or exchange factors), such as RALGDS, are effectors of Ras-related GTPases (see MIM 190020) that participate in signaling for a variety of cellular processes.[supplied by OMIM, Nov 2010]
PHENOTYPE: Homozygous mutant mice exhibit reduced tumor incidence, size and progression to malignancy in multistage skin carcinogenesis. [provided by MGI curators]

Allele List at MGI

All alleles(16) : Targeted(5) Gene trapped(11)

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1600012P17Rik	T	C	1: 158,797,126 (GRCm39)		noncoding transcript	Het
2310030G06Rik	T	C	9: 50,651,967 (GRCm39)	E87G	probably damaging	Het
Aknad1	A	T	3: 108,682,547 (GRCm39)	H541L	possibly damaging	Het
Asb15	A	G	6: 24,567,236 (GRCm39)	E519G	possibly damaging	Het
Atad2	T	C	15: 57,971,758 (GRCm39)	D373G	probably benign	Het
Bbs12	G	A	3: 37,374,529 (GRCm39)	V326M	probably damaging	Het
Birc6	T	C	17: 74,936,484 (GRCm39)	I2617T	probably damaging	Het
Brca2	A	G	5: 150,454,581 (GRCm39)	T115A	probably benign	Het
Casz1	T	C	4: 149,023,438 (GRCm39)	L495P	probably damaging	Het
Ccdc30	T	A	4: 119,190,785 (GRCm39)	I481F	probably damaging	Het
Cept1	A	T	3: 106,446,677 (GRCm39)	Y56*	probably null	Het
Cfap54	A	C	10: 92,897,315 (GRCm39)		probably null	Het
Cyp2j8	G	T	4: 96,358,886 (GRCm39)	D344E	probably damaging	Het
Dido1	A	T	2: 180,331,368 (GRCm39)	W27R	probably damaging	Het
Disp3	A	G	4: 148,356,575 (GRCm39)	I95T	probably damaging	Het
Engase	G	T	11: 118,377,920 (GRCm39)	V237F	possibly damaging	Het
Ephb6	G	A	6: 41,595,094 (GRCm39)	E703K	probably damaging	Het
Fnip1	T	A	11: 54,356,997 (GRCm39)	F35L	probably damaging	Het
Fnip1	A	T	11: 54,390,352 (GRCm39)	T440S	probably benign	Het
Fras1	T	A	5: 96,879,477 (GRCm39)	H2431Q	probably benign	Het
Fzd4	A	T	7: 89,056,924 (GRCm39)	T324S	probably damaging	Het
Gm10192	C	G	4: 97,071,345 (GRCm39)	S20T	probably null	Het
Gpr84	A	T	15: 103,217,027 (GRCm39)	V350E	probably damaging	Het
Gsto2	T	C	19: 47,863,312 (GRCm39)	Y63H	probably damaging	Het
Gtpbp6	T	C	5: 110,252,186 (GRCm39)	T449A	probably damaging	Het
Herc2	G	A	7: 55,820,388 (GRCm39)	V2876I	probably benign	Het
Hnrnpa3	A	G	2: 75,492,351 (GRCm39)	I152V	possibly damaging	Het
Hpse2	T	C	19: 42,777,510 (GRCm39)	D552G	possibly damaging	Het
Itfg1	A	G	8: 86,459,070 (GRCm39)	V460A	possibly damaging	Het
Jhy	G	A	9: 40,822,494 (GRCm39)	A548V	probably benign	Het
Klhl21	T	A	4: 152,094,268 (GRCm39)	L290Q	possibly damaging	Het
Knl1	T	C	2: 118,902,417 (GRCm39)	S1373P	probably benign	Het
Kpna2	A	C	11: 106,881,085 (GRCm39)	M426R	probably benign	Het
Krt9	C	T	11: 100,081,675 (GRCm39)	V285I	probably damaging	Het
Lpar1	T	G	4: 58,437,346 (GRCm39)	H361P	possibly damaging	Het
Macf1	T	C	4: 123,349,237 (GRCm39)	T2100A	probably benign	Het
Mfsd13b	T	C	7: 120,590,549 (GRCm39)	F97L	probably damaging	Het
Mmp15	A	G	8: 96,098,958 (GRCm39)	K595R	probably benign	Het
Mrps25	C	T	6: 92,152,085 (GRCm39)	G145D	probably damaging	Het
Muc4	T	A	16: 32,574,916 (GRCm39)		probably benign	Het
Napa	A	T	7: 15,849,196 (GRCm39)	K245N	probably benign	Het
Or10p1	C	A	10: 129,444,043 (GRCm39)	M102I	probably damaging	Het
Or14c39	A	G	7: 86,344,329 (GRCm39)	T222A	probably benign	Het
Or2y1c	A	T	11: 49,361,112 (GRCm39)	I45F	probably damaging	Het
Or4g17	G	A	2: 111,210,082 (GRCm39)	V246M	probably damaging	Het
Or4k39	T	A	2: 111,239,225 (GRCm39)		noncoding transcript	Het
Or5au1	T	A	14: 52,272,921 (GRCm39)	I216F	possibly damaging	Het
Or8c20	A	G	9: 38,260,577 (GRCm39)	Y60C	probably damaging	Het
Or8k35	A	G	2: 86,424,381 (GRCm39)	S264P	possibly damaging	Het
Papss2	A	T	19: 32,616,378 (GRCm39)	T195S	probably benign	Het
Parp4	T	A	14: 56,848,267 (GRCm39)	H694Q	probably damaging	Het
Patj	C	T	4: 98,293,807 (GRCm39)	R20*	probably null	Het
Pcdhgb8	T	A	18: 37,895,419 (GRCm39)	V163E	probably damaging	Het
Pkd2l1	T	A	19: 44,144,060 (GRCm39)	T338S	probably benign	Het
Ppargc1b	A	T	18: 61,444,328 (GRCm39)	S278R	possibly damaging	Het
Ppl	T	C	16: 4,906,846 (GRCm39)	T1150A	probably benign	Het
Rassf2	G	A	2: 131,844,783 (GRCm39)		probably benign	Het
Ring1	T	C	17: 34,240,971 (GRCm39)		probably benign	Het
Rusc1	A	C	3: 88,998,949 (GRCm39)	S278A	probably benign	Het
Samd9l	T	C	6: 3,375,623 (GRCm39)	N546S	probably benign	Het
Sct	A	C	7: 140,858,954 (GRCm39)		probably benign	Het
Slc22a12	T	G	19: 6,588,474 (GRCm39)	H348P	probably benign	Het
Slc25a15	A	G	8: 22,873,248 (GRCm39)	S143P	probably damaging	Het
Slc26a11	C	A	11: 119,247,657 (GRCm39)		probably benign	Het
Slc6a20b	A	G	9: 123,427,625 (GRCm39)	M428T	probably damaging	Het
Smim17	G	A	7: 6,432,321 (GRCm39)	V88M	probably damaging	Het
Smoc1	G	T	12: 81,214,425 (GRCm39)	W269L	probably damaging	Het
Sox5	C	T	6: 143,807,109 (GRCm39)		probably null	Het
Sp100	A	G	1: 85,629,179 (GRCm39)	*483W	probably null	Het
Sptbn5	T	A	2: 119,907,703 (GRCm39)		noncoding transcript	Het
Sun5	G	A	2: 153,707,283 (GRCm39)	R132*	probably null	Het
Tedc2	A	G	17: 24,435,354 (GRCm39)	V345A	probably benign	Het
Tlr6	T	A	5: 65,111,739 (GRCm39)	R389S	probably benign	Het
Ttc17	G	T	2: 94,202,113 (GRCm39)	H396Q	probably damaging	Het
Ttn	A	G	2: 76,773,383 (GRCm39)	S2340P	probably damaging	Het
Vmn1r219	C	T	13: 23,346,999 (GRCm39)	Q63*	probably null	Het
Vmn1r224	A	G	17: 20,639,902 (GRCm39)	T160A	possibly damaging	Het
Vmn2r11	T	C	5: 109,195,436 (GRCm39)	N630S	probably damaging	Het
Zfp1005	T	A	2: 150,109,549 (GRCm39)	C80S	possibly damaging	Het
Zfp747	A	G	7: 126,973,498 (GRCm39)	V224A	possibly damaging	Het
Zfp804b	T	C	5: 6,822,250 (GRCm39)	N271S	probably benign	Het

Other mutations in Ralgds

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00426:Ralgds	APN	2	28,442,230 (GRCm39)	missense	probably damaging	1.00
IGL01774:Ralgds	APN	2	28,440,554 (GRCm39)	nonsense	probably null
IGL02747:Ralgds	APN	2	28,438,122 (GRCm39)	unclassified	probably benign
IGL03135:Ralgds	APN	2	28,439,100 (GRCm39)	missense	probably damaging	0.99
PIT4458001:Ralgds	UTSW	2	28,432,486 (GRCm39)	missense	probably damaging	1.00
PIT4531001:Ralgds	UTSW	2	28,435,226 (GRCm39)	nonsense	probably null
R0049:Ralgds	UTSW	2	28,432,391 (GRCm39)	synonymous	silent
R0052:Ralgds	UTSW	2	28,434,400 (GRCm39)	critical splice donor site	probably null
R0052:Ralgds	UTSW	2	28,434,400 (GRCm39)	critical splice donor site	probably null
R0285:Ralgds	UTSW	2	28,440,581 (GRCm39)	splice site	probably null
R0665:Ralgds	UTSW	2	28,435,218 (GRCm39)	missense	probably damaging	0.98
R0718:Ralgds	UTSW	2	28,439,128 (GRCm39)	missense	probably benign	0.37
R1755:Ralgds	UTSW	2	28,440,558 (GRCm39)	missense	probably damaging	0.99
R1966:Ralgds	UTSW	2	28,435,887 (GRCm39)	missense	probably damaging	0.96
R2873:Ralgds	UTSW	2	28,438,781 (GRCm39)	splice site	probably null
R2874:Ralgds	UTSW	2	28,438,781 (GRCm39)	splice site	probably null
R4082:Ralgds	UTSW	2	28,442,283 (GRCm39)	utr 3 prime	probably benign
R4342:Ralgds	UTSW	2	28,442,107 (GRCm39)	missense	probably damaging	1.00
R4344:Ralgds	UTSW	2	28,442,107 (GRCm39)	missense	probably damaging	1.00
R4647:Ralgds	UTSW	2	28,435,532 (GRCm39)	critical splice donor site	probably null
R4738:Ralgds	UTSW	2	28,435,428 (GRCm39)	missense	probably damaging	1.00
R5027:Ralgds	UTSW	2	28,442,102 (GRCm39)	critical splice acceptor site	probably null
R5320:Ralgds	UTSW	2	28,435,224 (GRCm39)	missense	probably damaging	1.00
R5738:Ralgds	UTSW	2	28,432,538 (GRCm39)	intron	probably benign
R5969:Ralgds	UTSW	2	28,432,426 (GRCm39)	missense	probably damaging	1.00
R6014:Ralgds	UTSW	2	28,433,673 (GRCm39)	missense	probably damaging	0.97
R6136:Ralgds	UTSW	2	28,440,577 (GRCm39)	critical splice donor site	probably null
R6137:Ralgds	UTSW	2	28,437,600 (GRCm39)	missense	probably damaging	0.99
R6583:Ralgds	UTSW	2	28,423,656 (GRCm39)	missense	probably damaging	0.99
R6618:Ralgds	UTSW	2	28,440,523 (GRCm39)	missense	probably benign	0.09
R6801:Ralgds	UTSW	2	28,438,448 (GRCm39)	missense	probably damaging	1.00
R7046:Ralgds	UTSW	2	28,430,741 (GRCm39)	missense	probably damaging	1.00
R7095:Ralgds	UTSW	2	28,439,320 (GRCm39)	missense	possibly damaging	0.83
R7276:Ralgds	UTSW	2	28,435,884 (GRCm39)	missense	probably damaging	1.00
R7399:Ralgds	UTSW	2	28,433,667 (GRCm39)	missense	possibly damaging	0.95
R7446:Ralgds	UTSW	2	28,435,901 (GRCm39)	missense	probably damaging	0.99
R7560:Ralgds	UTSW	2	28,437,607 (GRCm39)	missense	probably damaging	1.00
R8384:Ralgds	UTSW	2	28,437,182 (GRCm39)	missense	probably damaging	1.00
R9422:Ralgds	UTSW	2	28,435,184 (GRCm39)	missense	probably benign
X0028:Ralgds	UTSW	2	28,438,711 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGACTTCCTTAGGCTCTCATTGAC -3'
(R):5'- GCCACTCTAGTCTGTAAGTGC -3'

Sequencing Primer
(F):5'- CATTGACCTCTACTGGGGTCG -3'
(R):5'- GTAAGTGCTTAGTCTCCAGCCAG -3'

Posted On

2015-11-11