Mutagenetix > Incidental Mutation

Incidental Mutation 'R0403:Mag'

35696

Institutional Source

Beutler Lab

Gene Symbol

Mag

Ensembl Gene

ENSMUSG00000036634

Gene Name

myelin-associated glycoprotein

Synonyms

Gma, siglec-4a

MMRRC Submission

038608-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0403 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

30899176-30914873 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 30906980 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 344 (D344G)

Ref Sequence

ENSEMBL: ENSMUSP00000140526 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000040548] [ENSMUST00000187137] [ENSMUST00000188569] [ENSMUST00000190638] [ENSMUST00000190950] [ENSMUST00000191081]

AlphaFold

P20917

Predicted Effect

probably damaging
Transcript: ENSMUST00000040548
AA Change: D386G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000041464
Gene: ENSMUSG00000036634
AA Change: D386G

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	135	1.67e0	SMART
IG	144	237	4.38e0	SMART
IGc2	252	312	5.74e-13	SMART
IGc2	338	399	7.64e-9	SMART
transmembrane domain	511	533	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186422

Predicted Effect

probably damaging
Transcript: ENSMUST00000187137
AA Change: D386G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000139564
Gene: ENSMUSG00000036634
AA Change: D386G

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	135	1.67e0	SMART
IG	144	237	4.38e0	SMART
IGc2	252	312	5.74e-13	SMART
IGc2	338	399	7.64e-9	SMART
transmembrane domain	511	533	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000188569
AA Change: D344G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000140526
Gene: ENSMUSG00000036634
AA Change: D344G

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	135	1.67e0	SMART
Blast:IG	152	195	1e-19	BLAST
IGc2	210	270	5.74e-13	SMART
IGc2	296	357	7.64e-9	SMART
transmembrane domain	469	491	N/A	INTRINSIC
low complexity region	535	549	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000190638

SMART Domains

Protein: ENSMUSP00000140578
Gene: ENSMUSG00000036634

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	135	6.7e-3	SMART
Blast:IG	144	168	5e-8	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000190950

SMART Domains

Protein: ENSMUSP00000139861
Gene: ENSMUSG00000036634

Domain	Start	End	E-Value	Type
Blast:CLECT	1	64	3e-39	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000191081
AA Change: D386G

PolyPhen 2 Score 0.150 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000139881
Gene: ENSMUSG00000036634
AA Change: D386G

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
IG	27	135	6.7e-3	SMART
IG	144	237	1.8e-2	SMART
IGc2	252	312	2.4e-15	SMART
IGc2	338	399	3e-11	SMART
transmembrane domain	511	533	N/A	INTRINSIC
low complexity region	577	591	N/A	INTRINSIC

Meta Mutation Damage Score

0.2985

Coding Region Coverage

1x: 98.0%
3x: 96.8%
10x: 93.2%
20x: 83.7%

Validation Efficiency

97% (110/113)

MGI Phenotype

FUNCTION: This gene encodes a type I membrane protein and member of the immunoglobulin-like superfamily. It is expressed in myelinating glial cells, including oligodendrocytes of the central nervous system and Schwann cells of the peripheral nervous system. Mice lacking the encoded protein express abundant myelin, but suffer long-term axon degeneration, altered distribution of channels and adhesion molecules at nodes of Ranvier, and altered axon cytoskeletal structure. While not required for myelination, the encoded protein enhances axon-myelin stability, helps to structure nodes of Ranvier, and regulates the axon cytoskeleton. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]
PHENOTYPE: Homozygotes for targeted null mutations exhibit delayed CNS myelination, late myelin degeneration in peripheral nerves, hypomyelination of optic nerves, and subtle intention tremors. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ace	A	G	11: 105,973,880		probably null	Het
Adgrg3	C	T	8: 95,036,922	L284F	probably benign	Het
Alkbh8	T	A	9: 3,385,469	V587E	probably damaging	Het
Ap4b1	T	A	3: 103,818,839	C244S	probably damaging	Het
Ap4b1	T	A	3: 103,821,396	M590K	probably benign	Het
Arhgap15	C	T	2: 44,063,766	T168I	probably damaging	Het
Arntl2	T	A	6: 146,822,655	H348Q	probably damaging	Het
Atp8b1	A	G	18: 64,540,310	V997A	probably damaging	Het
Atrn	G	A	2: 130,906,859	C100Y	probably damaging	Het
Baiap2l2	C	A	15: 79,271,216	A151S	probably benign	Het
Baz2b	A	T	2: 59,969,377	D199E	possibly damaging	Het
Cblb	A	G	16: 52,152,626	D440G	probably benign	Het
Cdon	T	C	9: 35,473,500	V694A	probably benign	Het
Cep250	A	T	2: 155,992,349	R2065W	probably damaging	Het
Ces2b	G	T	8: 104,833,945	A131S	probably damaging	Het
Chrna9	A	T	5: 65,967,892	T59S	possibly damaging	Het
Cog3	T	A	14: 75,742,327		probably benign	Het
Cpa1	G	A	6: 30,641,857	V227I	probably benign	Het
Cyp3a25	A	T	5: 145,998,513	C98S	probably damaging	Het
D8Ertd738e	C	T	8: 84,249,601		probably null	Het
Ddx60	A	G	8: 61,994,541		probably benign	Het
Dhx16	T	C	17: 35,883,050		probably null	Het
Dnah9	T	A	11: 66,084,789	Q1478L	possibly damaging	Het
Dock10	T	C	1: 80,524,070	Y1434C	possibly damaging	Het
Enpp3	T	A	10: 24,804,436	D325V	probably damaging	Het
Entpd6	C	A	2: 150,760,170	T194K	possibly damaging	Het
Fam208b	A	T	13: 3,582,052	Y816*	probably null	Het
Fat2	A	T	11: 55,270,349	V3185E	probably benign	Het
Flrt1	A	G	19: 7,095,919	L421P	probably benign	Het
Fmn2	A	T	1: 174,694,278	Q1292L	probably damaging	Het
Fndc1	T	C	17: 7,775,588		probably null	Het
Fndc1	T	C	17: 7,753,723	D1459G	probably damaging	Het
Fzr1	A	G	10: 81,369,368	S265P	possibly damaging	Het
Gm13119	A	G	4: 144,362,646	N178S	probably benign	Het
Gm14085	T	C	2: 122,521,854	L364S	probably damaging	Het
Gpr142	G	A	11: 114,806,029	V134M	probably damaging	Het
Grid2ip	G	T	5: 143,357,620	V24L	possibly damaging	Het
Herc2	G	A	7: 56,159,417	R2555H	probably damaging	Het
Hpdl	A	T	4: 116,820,479	Y262N	possibly damaging	Het
Htr3a	A	G	9: 48,908,659	V57A	probably damaging	Het
Igfbp7	T	C	5: 77,355,591	I186V	probably benign	Het
Itga2b	C	T	11: 102,467,326		probably null	Het
Itgae	A	C	11: 73,123,183	D736A	possibly damaging	Het
Itpkc	T	A	7: 27,208,345	M645L	probably benign	Het
Jchain	T	C	5: 88,521,378	R139G	probably benign	Het
Kif13a	A	G	13: 46,791,401	V908A	probably damaging	Het
Kif1b	T	A	4: 149,181,967	K389*	probably null	Het
Klhl12	T	C	1: 134,485,856	Y360H	possibly damaging	Het
Knop1	G	A	7: 118,853,053	R148W	probably damaging	Het
Lpar1	T	A	4: 58,487,191	N27Y	probably damaging	Het
Lpar2	T	A	8: 69,824,152	V197D	probably damaging	Het
Lrrc74a	A	G	12: 86,740,979	N128S	probably damaging	Het
Lum	G	T	10: 97,572,043	V337F	probably benign	Het
Maip1	G	A	1: 57,407,196	A142T	probably benign	Het
Mlh3	A	G	12: 85,268,968	V148A	possibly damaging	Het
Nav3	A	G	10: 109,767,103	V1195A	probably damaging	Het
Ncor2	A	G	5: 125,033,337	S868P	possibly damaging	Het
Nek1	A	G	8: 61,106,855	E907G	probably damaging	Het
Nfam1	G	A	15: 83,016,379	T134I	probably benign	Het
Nr0b2	T	C	4: 133,553,759	V112A	probably damaging	Het
Nrp1	A	G	8: 128,457,969	N365S	probably damaging	Het
Nrsn2	T	C	2: 152,369,790	Y107C	probably damaging	Het
Ntng1	G	A	3: 109,934,611	A282V	probably damaging	Het
Nxf1	T	C	19: 8,765,028	I337T	probably damaging	Het
Obscn	C	T	11: 59,076,540	G479D	probably damaging	Het
Olfr45	T	C	7: 140,691,309	S135P	possibly damaging	Het
Oprd1	T	A	4: 132,113,768	D293V	probably benign	Het
P3h2	T	G	16: 25,969,950	N586H	possibly damaging	Het
Pcid2	T	C	8: 13,085,367	Y214C	probably damaging	Het
Pkd1l3	C	G	8: 109,623,649	D375E	possibly damaging	Het
Pkd1l3	G	A	8: 109,623,663	S380N	probably benign	Het
Ppic	C	A	18: 53,411,071	G81W	probably damaging	Het
Ppp2r1a	C	A	17: 20,957,041	P246T	probably damaging	Het
Ppp4r4	T	G	12: 103,584,102	S46A	probably benign	Het
Prkce	A	G	17: 86,168,653	T21A	probably damaging	Het
Prkg2	T	C	5: 98,994,645	E210G	possibly damaging	Het
Prss35	A	G	9: 86,756,037	M287V	probably damaging	Het
Psd	G	A	19: 46,320,972		probably benign	Het
Ptch2	A	T	4: 117,110,839	K843*	probably null	Het
Rab44	C	A	17: 29,145,261	T603K	probably damaging	Het
Rasal3	T	A	17: 32,392,790		probably null	Het
Rbbp6	A	G	7: 122,992,296	T526A	probably damaging	Het
Ros1	A	T	10: 52,143,438		probably benign	Het
Sec24b	T	A	3: 129,989,676	L1104F	possibly damaging	Het
Sec24b	A	G	3: 129,999,534	S685P	probably damaging	Het
Sema6a	G	A	18: 47,290,045		probably null	Het
Setmar	A	T	6: 108,075,962	H139L	probably benign	Het
Slc4a7	T	C	14: 14,766,808	V710A	probably benign	Het
Smarcc1	T	A	9: 110,237,808		probably null	Het
Smchd1	G	A	17: 71,394,902	L1032F	probably damaging	Het
Speg	T	C	1: 75,430,784		probably benign	Het
Tcea1	C	G	1: 4,889,503	R134G	probably benign	Het
Tchhl1	C	T	3: 93,471,029	Q347*	probably null	Het
Tecrl	A	T	5: 83,354,758		probably benign	Het
Tepsin	T	C	11: 120,093,682		probably benign	Het
Tmem40	G	A	6: 115,733,985		probably benign	Het
Tpr	G	A	1: 150,407,414		probably benign	Het
Ttll12	A	T	15: 83,580,658		probably benign	Het
Ttn	T	A	2: 76,909,608	D3529V	probably benign	Het
Usp34	T	A	11: 23,333,838	H177Q	possibly damaging	Het
Vsig10	T	A	5: 117,338,461	S327T	probably benign	Het
Zbtb4	T	A	11: 69,777,639	M396K	probably damaging	Het
Zfp352	C	T	4: 90,225,009	T462I	possibly damaging	Het
Zfp385b	T	C	2: 77,476,845	M145V	probably damaging	Het
Zfp780b	C	A	7: 27,971,689	V65F	possibly damaging	Het

Other mutations in Mag

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01716:Mag	APN	7	30900387	missense	probably benign	0.00
IGL02036:Mag	APN	7	30908452	missense	probably damaging	0.97
IGL03263:Mag	APN	7	30899528	splice site	probably null
regie	UTSW	7	30900729	missense	probably damaging	0.98
R0005:Mag	UTSW	7	30908354	splice site	probably benign
R1590:Mag	UTSW	7	30901852	missense	probably damaging	0.99
R1874:Mag	UTSW	7	30909051	missense	probably benign	0.13
R2170:Mag	UTSW	7	30908987	nonsense	probably null
R2192:Mag	UTSW	7	30900641	nonsense	probably null
R3176:Mag	UTSW	7	30901648	critical splice donor site	probably null
R3177:Mag	UTSW	7	30901648	critical splice donor site	probably null
R3276:Mag	UTSW	7	30901648	critical splice donor site	probably null
R3277:Mag	UTSW	7	30901648	critical splice donor site	probably null
R4540:Mag	UTSW	7	30900729	missense	probably damaging	0.98
R4635:Mag	UTSW	7	30906923	missense	probably damaging	1.00
R4704:Mag	UTSW	7	30909173	missense	probably damaging	1.00
R4891:Mag	UTSW	7	30900368	missense	possibly damaging	0.77
R4940:Mag	UTSW	7	30909200	missense	probably damaging	1.00
R4952:Mag	UTSW	7	30909156	nonsense	probably null
R6301:Mag	UTSW	7	30900679	missense	probably damaging	1.00
R6441:Mag	UTSW	7	30907083	missense	possibly damaging	0.65
R6951:Mag	UTSW	7	30911433	missense	possibly damaging	0.89
R7562:Mag	UTSW	7	30909134	missense	possibly damaging	0.83
R8312:Mag	UTSW	7	30911469	missense	probably damaging	1.00
R9318:Mag	UTSW	7	30900368	missense	possibly damaging	0.77
X0024:Mag	UTSW	7	30907071	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTAGCAATGCTCTCCAAGGGACAAG -3'
(R):5'- TTGGAAGCCCACAGTGAATGGGAC -3'

Sequencing Primer
(F):5'- CACAGTATCCTCGATGGGAGATTC -3'
(R):5'- AATGGGACGGTGGTGGC -3'

Posted On

2013-05-09