Mutagenetix > Incidental Mutation

Incidental Mutation 'R4748:Cul4a'

357297

Institutional Source

Beutler Lab

Gene Symbol

Cul4a

Ensembl Gene

ENSMUSG00000031446

Gene Name

cullin 4A

Synonyms

2810470J21Rik

MMRRC Submission

042030-MU

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.545) question?

Stock #

R4748 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

13105621-13147940 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 13123526 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 1 (K1R)

Ref Sequence

ENSEMBL: ENSMUSP00000123074 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016680] [ENSMUST00000121426] [ENSMUST00000125514]

AlphaFold

Q3TCH7

Predicted Effect

probably benign
Transcript: ENSMUST00000016680
AA Change: K191R

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000016680
Gene: ENSMUSG00000031446
AA Change: K191R

Domain	Start	End	E-Value	Type
low complexity region	20	39	N/A	INTRINSIC
SCOP:d1ldja2	61	401	1e-118	SMART
Blast:CULLIN	83	151	5e-9	BLAST
CULLIN	434	582	1.6e-76	SMART
Blast:CULLIN	585	640	7e-28	BLAST
Cullin_Nedd8	688	753	8.29e-35	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000121426
AA Change: K191R

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000112525
Gene: ENSMUSG00000031446
AA Change: K191R

Domain	Start	End	E-Value	Type
low complexity region	20	39	N/A	INTRINSIC
Pfam:Cullin	63	259	3.1e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000125514
AA Change: K1R

PolyPhen 2 Score 0.064 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000123074
Gene: ENSMUSG00000031446
AA Change: K1R

Domain	Start	End	E-Value	Type
Pfam:Cullin	1	68	5.6e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141315

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] CUL4A is the ubiquitin ligase component of a multimeric complex involved in the degradation of DNA damage-response proteins (Liu et al., 2009 [PubMed 19481525]).[supplied by OMIM, Oct 2009]
PHENOTYPE: Mice homozygous for one knock-out allele exhibit reduced female fertility, male infertility, impaired spermatogenesis, and impaired DNA repair. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310009B15Rik	T	A	1: 138,856,656	E54D	possibly damaging	Het
4933415F23Rik	T	C	1: 23,101,870	E121G	probably damaging	Het
Abcb6	C	A	1: 75,177,358	G367W	probably damaging	Het
Asprv1	A	G	6: 86,628,423	M84V	probably damaging	Het
Aspscr1	T	C	11: 120,701,507	V291A	probably damaging	Het
B4galnt4	T	C	7: 141,071,720	F980L	probably damaging	Het
Bpi	G	A	2: 158,272,021	V280I	possibly damaging	Het
Bptf	T	C	11: 107,095,880	D581G	probably damaging	Het
Cap2	T	A	13: 46,639,826	Y223N	possibly damaging	Het
Ccdc141	A	C	2: 77,057,980	I480M	possibly damaging	Het
Ccnh	T	A	13: 85,189,639	V35E	probably benign	Het
Cd6	G	T	19: 10,794,225	S433*	probably null	Het
Ceacam10	A	C	7: 24,781,052	I83L	probably benign	Het
Chek2	T	C	5: 110,855,839		probably null	Het
Chia1	A	T	3: 106,122,449	D73V	probably damaging	Het
Commd2	G	A	3: 57,646,794	T162I	probably benign	Het
Creb3l3	C	T	10: 81,086,047	A316T	probably benign	Het
Cyp2c23	T	C	19: 44,016,737		probably null	Het
D630045J12Rik	T	C	6: 38,196,841	T131A	possibly damaging	Het
Dctn4	A	C	18: 60,550,236	K295N	probably damaging	Het
Dnah1	A	G	14: 31,319,945	V23A	probably benign	Het
Dync1i1	A	G	6: 5,767,048	K91E	possibly damaging	Het
Dzip1l	A	G	9: 99,642,651	D275G	probably damaging	Het
Enam	C	A	5: 88,501,543	P304T	probably damaging	Het
Enpep	A	G	3: 129,332,163	Y107H	probably damaging	Het
Exd2	T	C	12: 80,480,576	L27P	probably damaging	Het
Fam135b	T	A	15: 71,464,055	D430V	probably benign	Het
Fam222b	C	T	11: 78,154,603	T202I	possibly damaging	Het
Fmod	T	A	1: 134,041,174	N317K	probably damaging	Het
Frem2	A	G	3: 53,541,093	F2301L	probably damaging	Het
Frem3	T	C	8: 80,611,459	F127S	probably damaging	Het
Gbp7	A	G	3: 142,538,087	S132G	probably benign	Het
Gm4787	A	G	12: 81,378,056	C443R	probably damaging	Het
Grik2	T	C	10: 49,535,341	M5V	possibly damaging	Het
Helb	T	C	10: 120,084,849	D1063G	probably benign	Het
Kirrel	C	T	3: 87,089,151	M380I	probably null	Het
Krt90	G	A	15: 101,555,333	L429F	probably damaging	Het
Lrr1	C	A	12: 69,174,462	T126K	probably benign	Het
Mgat4e	C	A	1: 134,542,028	D93Y	probably damaging	Het
Mllt3	A	T	4: 87,840,781	S343R	possibly damaging	Het
Mms19	T	A	19: 41,944,558	S1031C	probably damaging	Het
Mtrf1	C	T	14: 79,411,650	H237Y	probably damaging	Het
Nckap1l	T	A	15: 103,473,056	L408Q	probably damaging	Het
Oit3	A	T	10: 59,424,082	C500S	probably damaging	Het
Olfr1163	T	A	2: 88,070,612	I257L	probably benign	Het
Olfr1238	C	T	2: 89,406,255	V275I	probably benign	Het
Olfr273	A	G	4: 52,856,076	S146P	possibly damaging	Het
Olfr738	T	G	14: 50,413,876	L111V	possibly damaging	Het
Otud7a	T	C	7: 63,735,915	S376P	possibly damaging	Het
Pabpc2	A	T	18: 39,774,269	K196*	probably null	Het
Paqr8	T	A	1: 20,935,413	C264S	probably benign	Het
Pgm2	T	A	4: 99,981,979	F459Y	probably benign	Het
Phip	C	A	9: 82,908,869	V675L	probably benign	Het
Pnma1	T	G	12: 84,147,723	T69P	probably benign	Het
Ptpn12	A	T	5: 21,005,385	C242*	probably null	Het
Rabep1	T	A	11: 70,908,468	V306E	probably benign	Het
Ros1	C	T	10: 52,115,997	D1377N	probably benign	Het
Ryr3	T	C	2: 112,964,405	T121A	possibly damaging	Het
Scaf11	G	A	15: 96,420,421	Q421*	probably null	Het
Shcbp1	G	A	8: 4,744,512	T427M	probably damaging	Het
Shprh	G	A	10: 11,170,476	R979H	probably damaging	Het
Slc22a27	C	T	19: 7,925,876	C163Y	probably benign	Het
Slc27a1	A	G	8: 71,580,675	D287G	probably damaging	Het
Slc27a1	C	T	8: 71,580,809	T310M	possibly damaging	Het
Slc29a3	A	G	10: 60,716,326	V313A	probably benign	Het
Slc35f2	A	T	9: 53,771,785	M1L	probably benign	Het
Sltm	G	C	9: 70,581,365	R599T	probably damaging	Het
Spic	T	A	10: 88,675,890	Q168L	probably damaging	Het
Spink6	G	A	18: 44,082,361		probably null	Het
Stac2	T	C	11: 98,041,372	E235G	possibly damaging	Het
Szt2	G	A	4: 118,389,191	Q957*	probably null	Het
Them7	A	T	2: 105,378,646	T104S	possibly damaging	Het
Tmed4	T	A	11: 6,271,716	I207F	possibly damaging	Het
Tmem248	A	G	5: 130,236,890	E178G	probably benign	Het
Tomm40l	G	A	1: 171,219,562	R296*	probably null	Het
Trim80	C	A	11: 115,448,138	T598N	possibly damaging	Het
Trim9	T	C	12: 70,248,273	N688D	probably damaging	Het
Vil1	C	T	1: 74,421,266	A194V	probably damaging	Het
Vmn2r61	A	T	7: 42,267,141	M393L	probably damaging	Het
Vmn2r63	C	T	7: 42,928,120	M331I	probably benign	Het
Vps33b	G	T	7: 80,290,048	A516S	probably damaging	Het
Wisp1	C	A	15: 66,906,640	Y103*	probably null	Het
Zc3h6	G	A	2: 129,002,240	G235R	probably damaging	Het
Zfp612	T	A	8: 110,088,672	D170E	probably benign	Het
Zfp746	A	G	6: 48,064,556	I412T	probably benign	Het

Other mutations in Cul4a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00720:Cul4a	APN	8	13127735	missense	probably benign	0.18
IGL00952:Cul4a	APN	8	13146562	missense	probably damaging	1.00
IGL01604:Cul4a	APN	8	13133843	critical splice donor site	probably null
IGL01688:Cul4a	APN	8	13146571	nonsense	probably null
IGL02167:Cul4a	APN	8	13122826	missense	probably damaging	1.00
IGL02927:Cul4a	APN	8	13124861	missense	possibly damaging	0.55
IGL03066:Cul4a	APN	8	13133776	missense	probably benign	0.22
R0183:Cul4a	UTSW	8	13133790	missense	probably damaging	0.98
R1600:Cul4a	UTSW	8	13123954	missense	probably damaging	1.00
R1860:Cul4a	UTSW	8	13123565	missense	probably damaging	1.00
R1865:Cul4a	UTSW	8	13142589	missense	possibly damaging	0.94
R1905:Cul4a	UTSW	8	13133171	missense	probably benign	0.06
R1964:Cul4a	UTSW	8	13136406	missense	possibly damaging	0.62
R1964:Cul4a	UTSW	8	13136854	missense	probably benign	0.00
R2381:Cul4a	UTSW	8	13136887	missense	probably benign	0.45
R3787:Cul4a	UTSW	8	13133668	missense	probably damaging	0.99
R4006:Cul4a	UTSW	8	13122859	missense	probably benign	0.04
R4007:Cul4a	UTSW	8	13122859	missense	probably benign	0.04
R5244:Cul4a	UTSW	8	13146566	missense	probably damaging	1.00
R6389:Cul4a	UTSW	8	13140278	missense	probably benign
R6736:Cul4a	UTSW	8	13136219	missense	probably benign	0.00
R7201:Cul4a	UTSW	8	13142991	missense	probably damaging	0.98
R7313:Cul4a	UTSW	8	13121676	critical splice acceptor site	probably benign
R7446:Cul4a	UTSW	8	13136874	missense	probably benign
R7485:Cul4a	UTSW	8	13140279	missense	possibly damaging	0.68
R7569:Cul4a	UTSW	8	13123493	missense	probably benign
R8219:Cul4a	UTSW	8	13146540	missense	possibly damaging	0.91
R8304:Cul4a	UTSW	8	13127727	missense	possibly damaging	0.88
R9152:Cul4a	UTSW	8	13105799	missense	probably benign
R9579:Cul4a	UTSW	8	13136147	missense	probably damaging	1.00
X0026:Cul4a	UTSW	8	13105871	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- CATAAACATCCTGGACTGGCC -3'
(R):5'- GGGTACTAGTCCCCACTTACAG -3'

Sequencing Primer
(F):5'- TTGGTAGGAGGACTCTTAAAGATC -3'
(R):5'- TAGTCCCCACTTACAGCTCTGAAG -3'

Posted On

2015-11-11