Incidental Mutation 'R4750:Prkcd'
| ID |
357524 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Prkcd
|
| Ensembl Gene |
ENSMUSG00000021948 |
| Gene Name |
protein kinase C, delta |
| Synonyms |
PKC[d], D14Ertd420e, Pkcd, PKCdelta |
| MMRRC Submission |
042031-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.420)
|
| Stock # |
R4750 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
14 |
| Chromosomal Location |
30317311-30348167 bp(-) (GRCm39) |
| Type of Mutation |
start codon destroyed |
| DNA Base Change (assembly) |
A to G
at 30332258 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Threonine
at position 1
(M1T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000107830
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022521]
[ENSMUST00000112202]
[ENSMUST00000112203]
[ENSMUST00000112206]
[ENSMUST00000112207]
[ENSMUST00000112210]
[ENSMUST00000112211]
|
| AlphaFold |
P28867 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000022521
AA Change: M1T
PolyPhen 2
Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000022521
Gene: ENSMUSG00000021948
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
C2
|
11 |
100 |
1.28e0 |
SMART |
|
C1
|
159 |
208 |
1.38e-13 |
SMART |
|
C1
|
231 |
280 |
3.19e-18 |
SMART |
|
S_TKc
|
373 |
627 |
1.17e-97 |
SMART |
|
S_TK_X
|
628 |
691 |
8.92e-25 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112202
|
| SMART Domains |
Protein: ENSMUSP00000107821
Gene: ENSMUSG00000021948
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
44 |
93 |
1.38e-13 |
SMART |
|
C1
|
116 |
165 |
3.19e-18 |
SMART |
|
S_TKc
|
258 |
512 |
1.17e-97 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112203
|
| SMART Domains |
Protein: ENSMUSP00000107822
Gene: ENSMUSG00000021948
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
44 |
93 |
1.38e-13 |
SMART |
|
C1
|
116 |
165 |
3.19e-18 |
SMART |
|
S_TKc
|
232 |
486 |
1.17e-97 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112206
|
| SMART Domains |
Protein: ENSMUSP00000107825
Gene: ENSMUSG00000021948
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
44 |
93 |
1.38e-13 |
SMART |
|
C1
|
116 |
165 |
3.19e-18 |
SMART |
|
S_TKc
|
258 |
512 |
1.17e-97 |
SMART |
|
S_TK_X
|
513 |
576 |
8.92e-25 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000112207
|
| SMART Domains |
Protein: ENSMUSP00000107826
Gene: ENSMUSG00000021948
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
44 |
93 |
1.38e-13 |
SMART |
|
C1
|
116 |
165 |
3.19e-18 |
SMART |
|
S_TKc
|
232 |
486 |
1.17e-97 |
SMART |
|
S_TK_X
|
487 |
550 |
8.92e-25 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000112208
|
| SMART Domains |
Protein: ENSMUSP00000107827
Gene: ENSMUSG00000021948
| Domain | Start | End | E-Value | Type |
|---|
|
C2
|
11 |
100 |
1.28e0 |
SMART |
|
C1
|
159 |
208 |
1.38e-13 |
SMART |
|
C1
|
231 |
280 |
3.19e-18 |
SMART |
|
S_TKc
|
347 |
601 |
1.17e-97 |
SMART |
|
S_TK_X
|
602 |
665 |
8.92e-25 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000112210
AA Change: M1T
PolyPhen 2
Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000107829
Gene: ENSMUSG00000021948
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
C2
|
11 |
100 |
1.28e0 |
SMART |
|
C1
|
159 |
208 |
1.38e-13 |
SMART |
|
C1
|
231 |
280 |
3.19e-18 |
SMART |
|
S_TKc
|
347 |
601 |
1.17e-97 |
SMART |
|
S_TK_X
|
602 |
665 |
8.92e-25 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000130736
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000112211
AA Change: M1T
PolyPhen 2
Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000107830
Gene: ENSMUSG00000021948
AA Change: M1T
| Domain | Start | End | E-Value | Type |
|---|
|
C2
|
11 |
100 |
1.28e0 |
SMART |
|
C1
|
159 |
208 |
1.38e-13 |
SMART |
|
C1
|
231 |
280 |
3.19e-18 |
SMART |
|
S_TKc
|
373 |
627 |
1.17e-97 |
SMART |
|
S_TK_X
|
628 |
691 |
8.92e-25 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135714
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000128135
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145806
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227078
|
| Meta Mutation Damage Score |
0.9696 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 94.9%
|
| Validation Efficiency |
97% (89/92) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Protein kinase C (PKC) is a family of serine- and threonine-specific protein kinases that can be activated by calcium and the second messenger diacylglycerol. PKC family members phosphorylate a wide variety of protein targets and are known to be involved in diverse cellular signaling pathways. PKC family members also serve as major receptors for phorbol esters, a class of tumor promoters. Each member of the PKC family has a specific expression profile and is believed to play distinct roles in cells. The protein encoded by this gene is one of the PKC family members. Studies both in human and mice demonstrate that this kinase is involved in B cell signaling and in the regulation of growth, apoptosis, and differentiation of a variety of cell types. Alternatively spliced transcript variants encoding the same protein have been observed. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit decreased neutrophil cell numbers and activity, increased B cell numbers and proliferation, increased acute inflammation, and increased IgG1 and IgA serum levels. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 83 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2510039O18Rik |
T |
A |
4: 148,025,945 (GRCm39) |
L155Q |
probably damaging |
Het |
| Aadac |
T |
C |
3: 59,943,238 (GRCm39) |
F48L |
probably benign |
Het |
| Aadat |
T |
A |
8: 60,979,634 (GRCm39) |
N165K |
probably benign |
Het |
| Acan |
C |
A |
7: 78,742,466 (GRCm39) |
D557E |
probably damaging |
Het |
| Adamts4 |
T |
A |
1: 171,078,635 (GRCm39) |
V85D |
probably benign |
Het |
| Agt |
A |
G |
8: 125,283,676 (GRCm39) |
V481A |
probably benign |
Het |
| Angpt1 |
T |
C |
15: 42,539,797 (GRCm39) |
N21D |
probably benign |
Het |
| Ankrd52 |
A |
C |
10: 128,213,958 (GRCm39) |
D38A |
probably damaging |
Het |
| Ap1g2 |
G |
T |
14: 55,341,822 (GRCm39) |
Q247K |
probably damaging |
Het |
| Apaf1 |
T |
C |
10: 90,896,050 (GRCm39) |
R341G |
probably damaging |
Het |
| Arf2 |
T |
C |
11: 103,870,585 (GRCm39) |
|
probably null |
Het |
| Arhgef1 |
A |
G |
7: 24,618,001 (GRCm39) |
|
probably benign |
Het |
| Bbln |
C |
T |
2: 32,269,425 (GRCm39) |
|
probably null |
Het |
| Bbox1 |
T |
A |
2: 110,095,866 (GRCm39) |
Y366F |
possibly damaging |
Het |
| Bmp3 |
A |
G |
5: 99,020,417 (GRCm39) |
E280G |
possibly damaging |
Het |
| Cd109 |
CATTTATTTATTTATTTATTTATTTATTTATTTAT |
CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT |
9: 78,619,782 (GRCm39) |
|
probably benign |
Het |
| Cdh12 |
T |
A |
15: 21,583,894 (GRCm39) |
V578D |
possibly damaging |
Het |
| Cdk19 |
T |
C |
10: 40,352,195 (GRCm39) |
S282P |
probably damaging |
Het |
| Cfap46 |
A |
G |
7: 139,259,239 (GRCm39) |
|
probably null |
Het |
| Cfhr3 |
T |
A |
1: 139,512,566 (GRCm39) |
|
noncoding transcript |
Het |
| Ctrc |
T |
A |
4: 141,568,834 (GRCm39) |
Y123F |
probably benign |
Het |
| Dync2i2 |
T |
C |
2: 29,923,932 (GRCm39) |
T198A |
probably benign |
Het |
| Enpp4 |
A |
G |
17: 44,413,246 (GRCm39) |
M96T |
probably damaging |
Het |
| Exosc10 |
T |
A |
4: 148,646,851 (GRCm39) |
S154T |
possibly damaging |
Het |
| Fbxo21 |
G |
A |
5: 118,138,533 (GRCm39) |
R486H |
probably benign |
Het |
| Foxj3 |
C |
A |
4: 119,473,787 (GRCm39) |
A204E |
probably damaging |
Het |
| Gas6 |
T |
G |
8: 13,526,227 (GRCm39) |
D237A |
probably benign |
Het |
| Gimap8 |
A |
G |
6: 48,627,361 (GRCm39) |
S112G |
probably benign |
Het |
| Gm4787 |
T |
C |
12: 81,425,141 (GRCm39) |
N339S |
possibly damaging |
Het |
| Gm6185 |
T |
C |
1: 161,009,933 (GRCm39) |
|
noncoding transcript |
Het |
| Gramd2b |
A |
G |
18: 56,565,372 (GRCm39) |
E9G |
probably benign |
Het |
| Hmgxb3 |
A |
T |
18: 61,300,568 (GRCm39) |
D169E |
probably benign |
Het |
| Isl2 |
T |
A |
9: 55,451,596 (GRCm39) |
V162D |
probably benign |
Het |
| Kcns3 |
T |
A |
12: 11,141,655 (GRCm39) |
D348V |
probably damaging |
Het |
| Kcp |
G |
A |
6: 29,484,625 (GRCm39) |
P1318S |
probably benign |
Het |
| Kif12 |
T |
A |
4: 63,086,020 (GRCm39) |
Q415L |
probably damaging |
Het |
| Lama3 |
T |
A |
18: 12,637,416 (GRCm39) |
H45Q |
probably benign |
Het |
| Lonp2 |
A |
T |
8: 87,358,130 (GRCm39) |
K117M |
probably benign |
Het |
| Loxl4 |
T |
A |
19: 42,593,443 (GRCm39) |
N243Y |
probably damaging |
Het |
| Lrif1 |
C |
A |
3: 106,642,880 (GRCm39) |
Q662K |
probably benign |
Het |
| Lrrc37a |
T |
A |
11: 103,346,306 (GRCm39) |
I3187L |
probably benign |
Het |
| Lsg1 |
A |
G |
16: 30,384,267 (GRCm39) |
I521T |
probably damaging |
Het |
| Mecom |
T |
G |
3: 30,011,679 (GRCm39) |
K865Q |
probably damaging |
Het |
| Myh10 |
T |
C |
11: 68,676,140 (GRCm39) |
I790T |
probably damaging |
Het |
| Nek7 |
C |
T |
1: 138,426,411 (GRCm39) |
S234N |
probably damaging |
Het |
| Nepro |
T |
C |
16: 44,550,545 (GRCm39) |
L179P |
probably damaging |
Het |
| Nexn |
A |
G |
3: 151,943,359 (GRCm39) |
C649R |
probably damaging |
Het |
| Nsmf |
T |
C |
2: 24,945,038 (GRCm39) |
S34P |
probably damaging |
Het |
| Or10x1 |
A |
G |
1: 174,196,488 (GRCm39) |
I2V |
probably benign |
Het |
| Or13n4 |
A |
G |
7: 106,423,514 (GRCm39) |
F73S |
probably damaging |
Het |
| Or13p5 |
T |
A |
4: 118,591,930 (GRCm39) |
V68D |
possibly damaging |
Het |
| Or1n2 |
T |
A |
2: 36,797,728 (GRCm39) |
S257T |
probably benign |
Het |
| Or1p1c |
T |
A |
11: 74,160,246 (GRCm39) |
F10L |
probably benign |
Het |
| Or2w2 |
A |
G |
13: 21,757,913 (GRCm39) |
S238P |
possibly damaging |
Het |
| Or52l1 |
A |
T |
7: 104,830,133 (GRCm39) |
I144N |
probably damaging |
Het |
| Or5bw2 |
A |
G |
7: 6,573,850 (GRCm39) |
I287V |
probably benign |
Het |
| Or5w16 |
C |
T |
2: 87,576,852 (GRCm39) |
T104I |
probably benign |
Het |
| P2rx5 |
G |
T |
11: 73,055,703 (GRCm39) |
K53N |
probably damaging |
Het |
| Pcdhb20 |
C |
A |
18: 37,639,184 (GRCm39) |
A570E |
possibly damaging |
Het |
| Pip4k2c |
T |
C |
10: 127,047,286 (GRCm39) |
H32R |
unknown |
Het |
| Pkhd1 |
T |
A |
1: 20,594,336 (GRCm39) |
D1259V |
possibly damaging |
Het |
| Plekha7 |
A |
T |
7: 115,736,546 (GRCm39) |
V889E |
probably damaging |
Het |
| Polr2b |
A |
C |
5: 77,479,886 (GRCm39) |
E546D |
possibly damaging |
Het |
| Ppm1l |
A |
G |
3: 69,456,661 (GRCm39) |
T193A |
probably damaging |
Het |
| Ppp1r37 |
G |
T |
7: 19,265,445 (GRCm39) |
D710E |
probably benign |
Het |
| Prdm4 |
A |
G |
10: 85,735,085 (GRCm39) |
F679L |
probably damaging |
Het |
| Prss59 |
A |
G |
6: 40,897,955 (GRCm39) |
W243R |
probably damaging |
Het |
| Rcor3 |
A |
G |
1: 191,814,749 (GRCm39) |
Y77H |
unknown |
Het |
| Rdh5 |
T |
C |
10: 128,754,235 (GRCm39) |
E66G |
possibly damaging |
Het |
| Slc12a5 |
A |
G |
2: 164,824,851 (GRCm39) |
M396V |
probably benign |
Het |
| Slco5a1 |
T |
G |
1: 12,949,504 (GRCm39) |
T629P |
probably damaging |
Het |
| Smarca5 |
A |
C |
8: 81,460,336 (GRCm39) |
N133K |
probably benign |
Het |
| Spag5 |
T |
C |
11: 78,210,878 (GRCm39) |
M927T |
probably benign |
Het |
| Spint4 |
A |
T |
2: 164,542,066 (GRCm39) |
D39V |
probably damaging |
Het |
| Syt6 |
T |
A |
3: 103,538,233 (GRCm39) |
*512R |
probably null |
Het |
| Tmem247 |
T |
C |
17: 87,229,770 (GRCm39) |
C204R |
probably damaging |
Het |
| Tmem72 |
A |
G |
6: 116,672,395 (GRCm39) |
Y149H |
probably damaging |
Het |
| Trpm6 |
T |
C |
19: 18,853,428 (GRCm39) |
V1816A |
probably damaging |
Het |
| Usp35 |
A |
G |
7: 96,959,546 (GRCm39) |
V1008A |
possibly damaging |
Het |
| Washc4 |
T |
C |
10: 83,426,916 (GRCm39) |
S1075P |
probably damaging |
Het |
| Xylb |
G |
T |
9: 119,188,379 (GRCm39) |
G62* |
probably null |
Het |
| Zfp142 |
T |
C |
1: 74,611,617 (GRCm39) |
E623G |
probably damaging |
Het |
| Zfp239 |
A |
G |
6: 117,848,700 (GRCm39) |
Y146C |
probably damaging |
Het |
|
| Other mutations in Prkcd |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00467:Prkcd
|
APN |
14 |
30,324,379 (GRCm39) |
splice site |
probably benign |
|
|
IGL00715:Prkcd
|
APN |
14 |
30,317,960 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01914:Prkcd
|
APN |
14 |
30,329,383 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
IGL02177:Prkcd
|
APN |
14 |
30,327,844 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02547:Prkcd
|
APN |
14 |
30,321,426 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02681:Prkcd
|
APN |
14 |
30,323,190 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Rigged
|
UTSW |
14 |
30,332,258 (GRCm39) |
start codon destroyed |
probably null |
0.99 |
|
rigged2
|
UTSW |
14 |
30,321,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03014:Prkcd
|
UTSW |
14 |
30,329,294 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0240:Prkcd
|
UTSW |
14 |
30,324,045 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0240:Prkcd
|
UTSW |
14 |
30,324,045 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1385:Prkcd
|
UTSW |
14 |
30,329,362 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1567:Prkcd
|
UTSW |
14 |
30,329,405 (GRCm39) |
missense |
probably benign |
0.35 |
|
R2114:Prkcd
|
UTSW |
14 |
30,327,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2983:Prkcd
|
UTSW |
14 |
30,321,435 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3716:Prkcd
|
UTSW |
14 |
30,321,669 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4162:Prkcd
|
UTSW |
14 |
30,323,154 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4164:Prkcd
|
UTSW |
14 |
30,323,154 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4180:Prkcd
|
UTSW |
14 |
30,332,261 (GRCm39) |
utr 5 prime |
probably benign |
|
|
R4637:Prkcd
|
UTSW |
14 |
30,320,722 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4756:Prkcd
|
UTSW |
14 |
30,321,623 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4849:Prkcd
|
UTSW |
14 |
30,321,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4850:Prkcd
|
UTSW |
14 |
30,321,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4893:Prkcd
|
UTSW |
14 |
30,321,382 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4914:Prkcd
|
UTSW |
14 |
30,327,395 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4925:Prkcd
|
UTSW |
14 |
30,329,570 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5644:Prkcd
|
UTSW |
14 |
30,329,370 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5832:Prkcd
|
UTSW |
14 |
30,327,778 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5910:Prkcd
|
UTSW |
14 |
30,317,938 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6049:Prkcd
|
UTSW |
14 |
30,329,254 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R6322:Prkcd
|
UTSW |
14 |
30,321,620 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7177:Prkcd
|
UTSW |
14 |
30,321,664 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7358:Prkcd
|
UTSW |
14 |
30,327,793 (GRCm39) |
missense |
probably benign |
|
|
R7494:Prkcd
|
UTSW |
14 |
30,331,150 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7554:Prkcd
|
UTSW |
14 |
30,331,220 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7778:Prkcd
|
UTSW |
14 |
30,327,772 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7810:Prkcd
|
UTSW |
14 |
30,320,407 (GRCm39) |
splice site |
probably null |
|
|
R8020:Prkcd
|
UTSW |
14 |
30,331,201 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R8145:Prkcd
|
UTSW |
14 |
30,324,019 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8417:Prkcd
|
UTSW |
14 |
30,331,208 (GRCm39) |
missense |
probably benign |
0.36 |
|
R9009:Prkcd
|
UTSW |
14 |
30,329,297 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9246:Prkcd
|
UTSW |
14 |
30,327,432 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9528:Prkcd
|
UTSW |
14 |
30,323,768 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9748:Prkcd
|
UTSW |
14 |
30,320,800 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R9783:Prkcd
|
UTSW |
14 |
30,321,444 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Z1176:Prkcd
|
UTSW |
14 |
30,332,206 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
| Predicted Primers |
PCR Primer
(F):5'- AACTGGGTGCTTCTGTCTTC -3'
(R):5'- CCTGGCATGTACAGCTGTTC -3'
Sequencing Primer
(F):5'- ATCCTCAGCTGGGTCGTTCAG -3'
(R):5'- CTGTAATTGCCTAAGGATCACAGGC -3'
|
| Posted On |
2015-11-11 |
Incidental Mutation