Mutagenetix > Incidental Mutation

Incidental Mutation 'R4750:Hmgxb3'

357534

Institutional Source

Beutler Lab

Gene Symbol

Hmgxb3

Ensembl Gene

ENSMUSG00000024622

Gene Name

HMG box domain containing 3

Synonyms

2510002C16Rik, A630042L21Rik

MMRRC Submission

042031-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.749) question?

Stock #

R4750 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

61264349-61310122 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 61300568 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 169 (D169E)

Ref Sequence

ENSEMBL: ENSMUSP00000089498 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000091884]

AlphaFold

Q6AXF8

Predicted Effect

probably benign
Transcript: ENSMUST00000091884
AA Change: D169E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000089498
Gene: ENSMUSG00000024622
AA Change: D169E

Domain	Start	End	E-Value	Type
HMG	40	110	6.8e-15	SMART
low complexity region	182	194	N/A	INTRINSIC
internal_repeat_1	307	336	1.98e-9	PROSPERO
internal_repeat_1	583	612	1.98e-9	PROSPERO
low complexity region	817	830	N/A	INTRINSIC
low complexity region	966	977	N/A	INTRINSIC
low complexity region	1239	1254	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 94.9%

Validation Efficiency

97% (89/92)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is one of the non-canonical high mobility group (HMG) genes. The encoded protein contains an HMG-box domain found in DNA binding proteins such as transcription factors and chromosomal proteins. [provided by RefSeq, Aug 2011]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2510039O18Rik	T	A	4: 148,025,945 (GRCm39)	L155Q	probably damaging	Het
Aadac	T	C	3: 59,943,238 (GRCm39)	F48L	probably benign	Het
Aadat	T	A	8: 60,979,634 (GRCm39)	N165K	probably benign	Het
Acan	C	A	7: 78,742,466 (GRCm39)	D557E	probably damaging	Het
Adamts4	T	A	1: 171,078,635 (GRCm39)	V85D	probably benign	Het
Agt	A	G	8: 125,283,676 (GRCm39)	V481A	probably benign	Het
Angpt1	T	C	15: 42,539,797 (GRCm39)	N21D	probably benign	Het
Ankrd52	A	C	10: 128,213,958 (GRCm39)	D38A	probably damaging	Het
Ap1g2	G	T	14: 55,341,822 (GRCm39)	Q247K	probably damaging	Het
Apaf1	T	C	10: 90,896,050 (GRCm39)	R341G	probably damaging	Het
Arf2	T	C	11: 103,870,585 (GRCm39)		probably null	Het
Arhgef1	A	G	7: 24,618,001 (GRCm39)		probably benign	Het
Bbln	C	T	2: 32,269,425 (GRCm39)		probably null	Het
Bbox1	T	A	2: 110,095,866 (GRCm39)	Y366F	possibly damaging	Het
Bmp3	A	G	5: 99,020,417 (GRCm39)	E280G	possibly damaging	Het
Cd109	CATTTATTTATTTATTTATTTATTTATTTATTTAT	CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT	9: 78,619,782 (GRCm39)		probably benign	Het
Cdh12	T	A	15: 21,583,894 (GRCm39)	V578D	possibly damaging	Het
Cdk19	T	C	10: 40,352,195 (GRCm39)	S282P	probably damaging	Het
Cfap46	A	G	7: 139,259,239 (GRCm39)		probably null	Het
Cfhr3	T	A	1: 139,512,566 (GRCm39)		noncoding transcript	Het
Ctrc	T	A	4: 141,568,834 (GRCm39)	Y123F	probably benign	Het
Dync2i2	T	C	2: 29,923,932 (GRCm39)	T198A	probably benign	Het
Enpp4	A	G	17: 44,413,246 (GRCm39)	M96T	probably damaging	Het
Exosc10	T	A	4: 148,646,851 (GRCm39)	S154T	possibly damaging	Het
Fbxo21	G	A	5: 118,138,533 (GRCm39)	R486H	probably benign	Het
Foxj3	C	A	4: 119,473,787 (GRCm39)	A204E	probably damaging	Het
Gas6	T	G	8: 13,526,227 (GRCm39)	D237A	probably benign	Het
Gimap8	A	G	6: 48,627,361 (GRCm39)	S112G	probably benign	Het
Gm4787	T	C	12: 81,425,141 (GRCm39)	N339S	possibly damaging	Het
Gm6185	T	C	1: 161,009,933 (GRCm39)		noncoding transcript	Het
Gramd2b	A	G	18: 56,565,372 (GRCm39)	E9G	probably benign	Het
Isl2	T	A	9: 55,451,596 (GRCm39)	V162D	probably benign	Het
Kcns3	T	A	12: 11,141,655 (GRCm39)	D348V	probably damaging	Het
Kcp	G	A	6: 29,484,625 (GRCm39)	P1318S	probably benign	Het
Kif12	T	A	4: 63,086,020 (GRCm39)	Q415L	probably damaging	Het
Lama3	T	A	18: 12,637,416 (GRCm39)	H45Q	probably benign	Het
Lonp2	A	T	8: 87,358,130 (GRCm39)	K117M	probably benign	Het
Loxl4	T	A	19: 42,593,443 (GRCm39)	N243Y	probably damaging	Het
Lrif1	C	A	3: 106,642,880 (GRCm39)	Q662K	probably benign	Het
Lrrc37a	T	A	11: 103,346,306 (GRCm39)	I3187L	probably benign	Het
Lsg1	A	G	16: 30,384,267 (GRCm39)	I521T	probably damaging	Het
Mecom	T	G	3: 30,011,679 (GRCm39)	K865Q	probably damaging	Het
Myh10	T	C	11: 68,676,140 (GRCm39)	I790T	probably damaging	Het
Nek7	C	T	1: 138,426,411 (GRCm39)	S234N	probably damaging	Het
Nepro	T	C	16: 44,550,545 (GRCm39)	L179P	probably damaging	Het
Nexn	A	G	3: 151,943,359 (GRCm39)	C649R	probably damaging	Het
Nsmf	T	C	2: 24,945,038 (GRCm39)	S34P	probably damaging	Het
Or10x1	A	G	1: 174,196,488 (GRCm39)	I2V	probably benign	Het
Or13n4	A	G	7: 106,423,514 (GRCm39)	F73S	probably damaging	Het
Or13p5	T	A	4: 118,591,930 (GRCm39)	V68D	possibly damaging	Het
Or1n2	T	A	2: 36,797,728 (GRCm39)	S257T	probably benign	Het
Or1p1c	T	A	11: 74,160,246 (GRCm39)	F10L	probably benign	Het
Or2w2	A	G	13: 21,757,913 (GRCm39)	S238P	possibly damaging	Het
Or52l1	A	T	7: 104,830,133 (GRCm39)	I144N	probably damaging	Het
Or5bw2	A	G	7: 6,573,850 (GRCm39)	I287V	probably benign	Het
Or5w16	C	T	2: 87,576,852 (GRCm39)	T104I	probably benign	Het
P2rx5	G	T	11: 73,055,703 (GRCm39)	K53N	probably damaging	Het
Pcdhb20	C	A	18: 37,639,184 (GRCm39)	A570E	possibly damaging	Het
Pip4k2c	T	C	10: 127,047,286 (GRCm39)	H32R	unknown	Het
Pkhd1	T	A	1: 20,594,336 (GRCm39)	D1259V	possibly damaging	Het
Plekha7	A	T	7: 115,736,546 (GRCm39)	V889E	probably damaging	Het
Polr2b	A	C	5: 77,479,886 (GRCm39)	E546D	possibly damaging	Het
Ppm1l	A	G	3: 69,456,661 (GRCm39)	T193A	probably damaging	Het
Ppp1r37	G	T	7: 19,265,445 (GRCm39)	D710E	probably benign	Het
Prdm4	A	G	10: 85,735,085 (GRCm39)	F679L	probably damaging	Het
Prkcd	A	G	14: 30,332,258 (GRCm39)	M1T	probably null	Het
Prss59	A	G	6: 40,897,955 (GRCm39)	W243R	probably damaging	Het
Rcor3	A	G	1: 191,814,749 (GRCm39)	Y77H	unknown	Het
Rdh5	T	C	10: 128,754,235 (GRCm39)	E66G	possibly damaging	Het
Slc12a5	A	G	2: 164,824,851 (GRCm39)	M396V	probably benign	Het
Slco5a1	T	G	1: 12,949,504 (GRCm39)	T629P	probably damaging	Het
Smarca5	A	C	8: 81,460,336 (GRCm39)	N133K	probably benign	Het
Spag5	T	C	11: 78,210,878 (GRCm39)	M927T	probably benign	Het
Spint4	A	T	2: 164,542,066 (GRCm39)	D39V	probably damaging	Het
Syt6	T	A	3: 103,538,233 (GRCm39)	*512R	probably null	Het
Tmem247	T	C	17: 87,229,770 (GRCm39)	C204R	probably damaging	Het
Tmem72	A	G	6: 116,672,395 (GRCm39)	Y149H	probably damaging	Het
Trpm6	T	C	19: 18,853,428 (GRCm39)	V1816A	probably damaging	Het
Usp35	A	G	7: 96,959,546 (GRCm39)	V1008A	possibly damaging	Het
Washc4	T	C	10: 83,426,916 (GRCm39)	S1075P	probably damaging	Het
Xylb	G	T	9: 119,188,379 (GRCm39)	G62*	probably null	Het
Zfp142	T	C	1: 74,611,617 (GRCm39)	E623G	probably damaging	Het
Zfp239	A	G	6: 117,848,700 (GRCm39)	Y146C	probably damaging	Het

Other mutations in Hmgxb3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00594:Hmgxb3	APN	18	61,290,811 (GRCm39)	missense	probably benign	0.00
IGL01325:Hmgxb3	APN	18	61,267,078 (GRCm39)	missense	probably damaging	1.00
IGL01364:Hmgxb3	APN	18	61,279,506 (GRCm39)	missense	probably damaging	0.96
IGL02160:Hmgxb3	APN	18	61,304,308 (GRCm39)	missense	probably damaging	1.00
IGL02271:Hmgxb3	APN	18	61,265,285 (GRCm39)	missense	probably damaging	1.00
IGL02755:Hmgxb3	APN	18	61,305,260 (GRCm39)	missense	probably damaging	1.00
R0309:Hmgxb3	UTSW	18	61,288,200 (GRCm39)	splice site	probably benign
R0828:Hmgxb3	UTSW	18	61,304,426 (GRCm39)	missense	probably damaging	1.00
R1276:Hmgxb3	UTSW	18	61,298,576 (GRCm39)	missense	probably benign	0.04
R1429:Hmgxb3	UTSW	18	61,283,505 (GRCm39)	missense	probably damaging	0.98
R1491:Hmgxb3	UTSW	18	61,266,980 (GRCm39)	missense	probably benign	0.04
R1675:Hmgxb3	UTSW	18	61,268,631 (GRCm39)	missense	probably damaging	1.00
R1886:Hmgxb3	UTSW	18	61,270,473 (GRCm39)	critical splice donor site	probably null
R1887:Hmgxb3	UTSW	18	61,270,473 (GRCm39)	critical splice donor site	probably null
R2070:Hmgxb3	UTSW	18	61,304,431 (GRCm39)	missense	probably damaging	1.00
R2084:Hmgxb3	UTSW	18	61,288,095 (GRCm39)	splice site	probably benign
R2110:Hmgxb3	UTSW	18	61,288,458 (GRCm39)	missense	possibly damaging	0.54
R2112:Hmgxb3	UTSW	18	61,288,458 (GRCm39)	missense	possibly damaging	0.54
R2149:Hmgxb3	UTSW	18	61,290,746 (GRCm39)	missense	probably benign	0.08
R2342:Hmgxb3	UTSW	18	61,296,063 (GRCm39)	missense	possibly damaging	0.89
R2436:Hmgxb3	UTSW	18	61,280,566 (GRCm39)	missense	probably benign
R2898:Hmgxb3	UTSW	18	61,288,368 (GRCm39)	missense	probably benign	0.00
R2975:Hmgxb3	UTSW	18	61,296,038 (GRCm39)	nonsense	probably null
R3110:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R3111:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R3112:Hmgxb3	UTSW	18	61,280,454 (GRCm39)	missense	probably damaging	1.00
R4327:Hmgxb3	UTSW	18	61,300,611 (GRCm39)	missense	probably benign	0.11
R4710:Hmgxb3	UTSW	18	61,270,547 (GRCm39)	missense	probably damaging	1.00
R4876:Hmgxb3	UTSW	18	61,279,606 (GRCm39)	missense	possibly damaging	0.94
R5177:Hmgxb3	UTSW	18	61,305,266 (GRCm39)	missense	probably damaging	1.00
R5490:Hmgxb3	UTSW	18	61,296,049 (GRCm39)	missense	probably damaging	0.99
R5601:Hmgxb3	UTSW	18	61,270,694 (GRCm39)	missense	probably damaging	1.00
R5718:Hmgxb3	UTSW	18	61,273,909 (GRCm39)	missense	probably benign	0.05
R6011:Hmgxb3	UTSW	18	61,296,096 (GRCm39)	missense	probably damaging	0.97
R6034:Hmgxb3	UTSW	18	61,265,594 (GRCm39)	missense	probably damaging	1.00
R6034:Hmgxb3	UTSW	18	61,265,594 (GRCm39)	missense	probably damaging	1.00
R6092:Hmgxb3	UTSW	18	61,270,672 (GRCm39)	missense	possibly damaging	0.56
R6142:Hmgxb3	UTSW	18	61,269,309 (GRCm39)	missense	probably benign	0.00
R6419:Hmgxb3	UTSW	18	61,285,296 (GRCm39)	missense	possibly damaging	0.71
R6675:Hmgxb3	UTSW	18	61,270,648 (GRCm39)	missense	possibly damaging	0.86
R7130:Hmgxb3	UTSW	18	61,265,450 (GRCm39)	missense	probably benign
R7431:Hmgxb3	UTSW	18	61,280,517 (GRCm39)	missense	probably damaging	1.00
R8265:Hmgxb3	UTSW	18	61,300,410 (GRCm39)	missense	possibly damaging	0.77
R8559:Hmgxb3	UTSW	18	61,288,491 (GRCm39)	missense	probably benign	0.19
R8674:Hmgxb3	UTSW	18	61,269,303 (GRCm39)	missense	probably benign	0.37
R8711:Hmgxb3	UTSW	18	61,290,721 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGTCTCTTCAATTACCAGGCTTG -3'
(R):5'- TCTAAGCTCTCTGCACTGACTG -3'

Sequencing Primer
(F):5'- CCAGGCTTGTCTGGTAAGG -3'
(R):5'- ACTGCTGTGGTTCCGGACATC -3'

Posted On

2015-11-11